Wall clock time and date at job start Sun Mar 29 2020 23:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33859 * 124.51785 * 2 1 4 4 C 1.37414 * 115.10837 * 180.02562 * 3 2 1 5 5 C 1.36751 * 113.29201 * 359.97438 * 4 3 2 6 6 C 1.46386 * 125.46419 * 180.26965 * 5 4 3 7 7 O 1.21627 * 120.00246 * 359.71081 * 6 5 4 8 8 O 1.34894 * 120.00067 * 179.71757 * 6 5 4 9 9 C 1.45202 * 117.00166 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47196 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47371 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47499 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00289 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00056 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99896 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99770 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47405 * 60.00029 * 16 14 12 18 18 H 1.48503 * 109.46918 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46820 * 299.99815 * 16 14 12 20 20 S 1.70614 * 124.51760 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47227 * 299.97169 * 1 2 3 23 23 H 1.09001 * 109.47441 * 59.97653 * 1 2 3 24 24 H 1.08001 * 122.44613 * 359.97438 * 3 2 1 25 25 H 1.08006 * 123.35403 * 180.02562 * 4 3 2 26 26 H 1.08997 * 109.47254 * 299.99479 * 9 8 6 27 27 H 1.08996 * 109.47022 * 59.99900 * 9 8 6 28 28 H 1.09003 * 109.47476 * 300.00164 * 10 9 8 29 29 H 1.09002 * 109.47187 * 59.99752 * 10 9 8 30 30 H 1.09003 * 109.47537 * 300.00272 * 11 10 9 31 31 H 1.09002 * 109.47032 * 59.99823 * 11 10 9 32 32 H 0.97003 * 119.99705 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2655 1.1029 0.0000 4 6 3.6212 0.8783 -0.0006 5 6 3.9493 -0.4493 -0.0005 6 6 5.3105 -0.9877 0.0047 7 8 6.2635 -0.2320 0.0040 8 8 5.5080 -2.3221 0.0100 9 6 6.8843 -2.7849 0.0143 10 6 6.9080 -4.3146 0.0206 11 6 8.3582 -4.8022 0.0245 12 6 8.3816 -6.3090 0.0314 13 1 7.4548 -6.8636 0.0325 14 6 9.5862 -6.9798 0.0364 15 7 10.7148 -6.3046 0.0346 16 14 9.6151 -8.8476 0.0442 17 1 8.9251 -9.3585 -1.1674 18 1 11.0228 -9.3208 0.0493 19 1 8.9207 -9.3483 1.2576 20 16 2.4738 -1.4058 0.0006 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8898 24 1 1.8429 2.0968 -0.0004 25 1 4.3545 1.6712 -0.0002 26 1 7.3941 -2.4170 -0.8761 27 1 7.3907 -2.4103 0.9038 28 1 6.3983 -4.6823 0.9113 29 1 6.4014 -4.6896 -0.8687 30 1 8.8676 -4.4347 -0.8663 31 1 8.8652 -4.4273 0.9136 32 1 11.5623 -6.7766 0.0385 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914618250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:39 Heat of formation + Delta-G solvation = -94.164429 kcal Electronic energy + Delta-G solvation = -15388.886813 eV Core-core repulsion = 12632.838591 eV Total energy + Delta-G solvation = -2756.048222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.46716 -39.05829 -37.71870 -35.95450 -33.76214 -33.04687 -29.52145 -28.23516 -25.46653 -24.51367 -23.01346 -22.20647 -20.14484 -19.42485 -18.57643 -17.75044 -17.61253 -17.02848 -16.49663 -15.78288 -15.60267 -14.89420 -14.66390 -14.14407 -13.99452 -13.93320 -13.84290 -13.39108 -13.00253 -12.80249 -12.77696 -12.54293 -12.42879 -12.12611 -11.95920 -11.79853 -11.50325 -11.46741 -11.27691 -10.57381 -9.75872 -9.61762 -8.22207 -6.34121 -0.69779 0.39970 0.89613 1.14830 1.41043 1.44949 1.50690 1.54539 1.85284 2.41332 3.11584 3.64330 3.83391 3.95476 4.01182 4.20069 4.32247 4.36207 4.65658 4.76229 4.76983 4.77527 5.03588 5.04196 5.06351 5.14717 5.31308 5.37725 5.47343 5.61603 5.78729 6.17786 6.52177 6.81379 7.35413 8.89939 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.045201 B = 0.003447 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.313255 B = 8121.261601 C = 8709.519317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.178 4.178 3 C -0.170 4.170 4 C -0.032 4.032 5 C -0.309 4.309 6 C 0.532 3.468 7 O -0.537 6.537 8 O -0.356 6.356 9 C 0.079 3.921 10 C -0.093 4.093 11 C 0.027 3.973 12 C -0.545 4.545 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 S 0.254 5.746 21 H 0.077 0.923 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.177 0.823 25 H 0.156 0.844 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.068 0.932 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.305 13.543 -0.075 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.299 4.299 3 C -0.199 4.199 4 C -0.067 4.067 5 C -0.427 4.427 6 C 0.379 3.621 7 O -0.430 6.430 8 O -0.272 6.272 9 C 0.006 3.994 10 C -0.131 4.131 11 C -0.010 4.010 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.190 1.190 20 S 0.523 5.477 21 H 0.096 0.904 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.194 0.806 25 H 0.174 0.826 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.141 12.126 -0.075 26.126 hybrid contribution 1.413 0.828 0.004 1.638 sum -21.728 12.954 -0.071 25.297 Atomic orbital electron populations 1.20606 0.84566 1.04459 1.05068 1.25026 1.03493 0.97519 1.03848 1.20132 0.91095 1.01384 1.07330 1.21046 0.97857 0.93894 0.93878 1.23534 0.94625 0.99082 1.25436 1.20182 0.88955 0.80793 0.72174 1.90847 1.43973 1.59921 1.48268 1.86556 1.33261 1.23520 1.83901 1.23212 0.77958 0.96192 1.02065 1.21471 0.98903 0.90028 1.02668 1.18924 0.91023 0.95584 0.95509 1.21596 0.93016 0.92594 1.51094 0.91590 1.26029 0.95140 1.04233 0.94517 1.70098 0.98086 1.37883 1.51336 0.85425 0.77187 0.78660 0.79333 1.18979 1.20907 1.18987 1.83409 0.91784 1.06574 1.65903 0.90359 0.88317 0.88316 0.80605 0.82633 0.91692 0.91700 0.91353 0.91361 0.98446 0.98453 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.33 71.23 0.74 0.13 16 2 C -0.18 -2.54 6.28 24.69 0.16 -2.39 16 3 C -0.17 -2.55 9.99 21.08 0.21 -2.34 16 4 C -0.03 -0.69 10.01 21.73 0.22 -0.47 16 5 C -0.31 -8.27 6.45 24.04 0.16 -8.11 16 6 C 0.53 18.50 7.92 69.94 0.55 19.05 16 7 O -0.54 -21.39 16.64 19.42 0.32 -21.07 16 8 O -0.36 -12.87 10.08 -58.09 -0.59 -13.45 16 9 C 0.08 3.11 5.48 71.98 0.39 3.50 16 10 C -0.09 -3.98 5.53 30.59 0.17 -3.81 16 11 C 0.03 1.44 4.97 29.85 0.15 1.58 16 12 C -0.55 -31.19 9.11 25.60 0.23 -30.95 16 13 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 14 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 15 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 16 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 S 0.25 5.10 22.85 -56.49 -1.29 3.81 16 21 H 0.08 0.47 8.11 -2.38 -0.02 0.45 16 22 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 23 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 25 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -69.67 300.66 5.30 -64.37 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.11 Total: 0.61 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.44 Total: -23.42 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.28 Total: -57.11 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.26 Total: -34.52 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.29 Total: 3.81 kcal Total: -69.67 5.30 -64.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914618250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.793 kcal (2) G-P(sol) polarization free energy of solvation -69.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds