Wall clock time and date at job start Sun Mar 29 2020 23:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34229 * 116.99839 * 2 1 4 4 O 1.20822 * 120.00176 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99751 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46962 * 179.97438 * 5 3 2 7 7 C 1.36874 * 120.00189 * 269.99755 * 6 5 3 8 8 H 1.08005 * 119.99737 * 137.27546 * 7 6 5 9 9 C 1.39041 * 120.00089 * 317.28238 * 7 6 5 10 10 N 1.31368 * 119.99895 * 166.35319 * 9 7 6 11 11 Si 1.86791 * 120.00007 * 346.35333 * 9 7 6 12 12 H 1.48502 * 109.47179 * 95.28182 * 11 9 7 13 13 H 1.48499 * 109.47368 * 215.27860 * 11 9 7 14 14 H 1.48496 * 109.47343 * 335.28288 * 11 9 7 15 15 C 1.34774 * 119.99732 * 90.00154 * 6 5 3 16 16 O 1.21593 * 120.00402 * 4.41841 * 15 6 5 17 17 C 1.47753 * 120.00035 * 184.41078 * 15 6 5 18 18 N 1.34576 * 126.05754 * 174.34095 * 17 15 6 19 19 C 1.30876 * 107.26801 * 180.02562 * 18 17 15 20 20 N 1.34583 * 107.63776 * 0.02562 * 19 18 17 21 21 H 0.97002 * 125.74306 * 179.73220 * 20 19 18 22 22 N 1.28852 * 108.51801 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.46881 * 60.00179 * 1 2 3 24 24 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47035 * 300.00095 * 1 2 3 26 26 H 1.09000 * 109.46637 * 59.99937 * 5 3 2 27 27 H 1.09000 * 109.47258 * 300.00368 * 5 3 2 28 28 H 0.97006 * 120.00031 * 180.02562 * 10 9 7 29 29 H 1.08002 * 126.17908 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1763 3.3353 -1.1858 8 1 3.8131 4.3447 -1.3107 9 6 4.8415 2.7016 -2.2295 10 7 4.7981 3.2093 -3.4404 11 14 5.7969 1.1287 -1.9100 12 1 4.9401 -0.0432 -2.2230 13 1 7.0069 1.1009 -2.7703 14 1 6.2031 1.0775 -0.4826 15 6 4.1723 3.3266 1.1667 16 8 4.0781 2.7239 2.2185 17 6 4.4959 4.7683 1.1679 18 7 4.6047 5.5548 2.2545 19 6 4.9006 6.7586 1.8346 20 7 4.9738 6.7155 0.4915 21 1 5.1743 7.4661 -0.0894 22 7 4.7279 5.5106 0.1067 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.9564 0.7805 -0.8892 27 1 3.9558 0.7809 0.8908 28 1 5.2618 2.7670 -4.1687 29 1 5.0569 7.6294 2.4541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116336599.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:37 Heat of formation + Delta-G solvation = -22.867481 kcal Electronic energy + Delta-G solvation = -19126.920685 eV Core-core repulsion = 15859.963667 eV Total energy + Delta-G solvation = -3266.957018 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.20245 -41.73275 -40.31109 -37.62754 -36.83354 -34.21746 -34.01087 -32.54817 -30.47459 -28.06381 -27.14989 -24.93557 -23.62019 -22.45922 -21.10362 -20.06597 -19.07136 -18.72636 -18.41242 -17.48130 -17.15472 -17.13514 -16.99461 -16.05561 -15.50487 -15.44658 -14.78927 -14.61712 -14.37848 -14.09650 -13.55413 -13.13769 -12.99592 -12.78996 -12.26548 -11.92144 -11.82907 -11.72048 -11.54666 -11.45969 -11.11358 -10.87906 -10.51294 -9.91884 -8.45236 -6.18280 0.50554 1.08192 1.19488 1.26539 1.36743 1.43694 1.56739 1.97734 2.16134 2.36803 2.46063 2.99063 3.54260 3.74361 3.84490 3.88010 4.09157 4.26965 4.31232 4.31643 4.65300 5.08041 5.18204 5.27092 5.51148 5.99043 6.12971 6.37879 6.67989 6.81415 7.12275 7.35855 7.49841 8.66984 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.010212 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.457668 B = 2741.312524 C = 3651.086266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.454 3.546 4 O -0.523 6.523 5 C 0.102 3.898 6 N -0.441 5.441 7 C -0.329 4.329 8 H 0.102 0.898 9 C 0.030 3.970 10 N -0.892 5.892 11 Si 0.908 3.092 12 H -0.241 1.241 13 H -0.276 1.276 14 H -0.257 1.257 15 C 0.571 3.429 16 O -0.591 6.591 17 C 0.133 3.867 18 N -0.517 5.517 19 C 0.206 3.794 20 N -0.397 5.397 21 H 0.466 0.534 22 N -0.248 5.248 23 H 0.057 0.943 24 H 0.143 0.857 25 H 0.059 0.941 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.281 0.719 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 1.237 4.124 4.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.295 3.705 4 O -0.411 6.411 5 C -0.022 4.022 6 N -0.162 5.162 7 C -0.458 4.458 8 H 0.120 0.880 9 C -0.175 4.175 10 N -0.529 5.529 11 Si 0.732 3.268 12 H -0.166 1.166 13 H -0.202 1.202 14 H -0.181 1.181 15 C 0.359 3.641 16 O -0.473 6.473 17 C -0.145 4.145 18 N -0.244 5.244 19 C -0.091 4.091 20 N -0.122 5.122 21 H 0.316 0.684 22 N -0.090 5.090 23 H 0.076 0.924 24 H 0.161 0.839 25 H 0.077 0.923 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.091 0.909 29 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -1.094 0.722 4.232 4.430 hybrid contribution 0.276 0.318 -0.588 0.723 sum -0.818 1.039 3.643 3.876 Atomic orbital electron populations 1.23595 0.74674 1.06020 1.02276 1.86484 1.25264 1.31937 1.84015 1.24444 0.92605 0.81771 0.71643 1.90614 1.67233 1.37629 1.45670 1.21509 0.87877 0.86500 1.06343 1.43144 1.57822 1.09370 1.05900 1.19324 1.36729 1.01390 0.88322 0.88024 1.25945 0.96116 1.01033 0.94389 1.69722 1.41027 1.41901 1.00261 0.86388 0.79992 0.80639 0.79821 1.16607 1.20166 1.18117 1.16930 0.79315 0.84394 0.83436 1.90625 1.56950 1.67567 1.32118 1.23277 1.08979 0.96453 0.85814 1.71173 1.20684 1.02405 1.30092 1.27645 0.98755 0.98459 0.84197 1.45513 1.48797 1.08943 1.08986 0.68419 1.75132 1.16254 0.92387 1.25187 0.92379 0.83892 0.92263 0.86837 0.84824 0.90885 0.69782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 15 2 O -0.36 -12.92 10.57 -51.40 -0.54 -13.46 15 3 C 0.45 20.20 8.02 71.24 0.57 20.78 15 4 O -0.52 -26.75 16.18 21.98 0.36 -26.39 15 5 C 0.10 4.61 4.69 85.63 0.40 5.01 15 6 N -0.44 -22.92 1.61 -642.98 -1.03 -23.95 15 7 C -0.33 -18.09 8.41 84.10 0.71 -17.39 15 8 H 0.10 6.09 6.12 -2.91 -0.02 6.08 15 9 C 0.03 1.57 5.41 84.96 0.46 2.03 15 10 N -0.89 -49.42 13.95 21.68 0.30 -49.12 15 11 Si 0.91 39.63 24.74 68.60 1.70 41.33 15 12 H -0.24 -9.44 6.81 99.48 0.68 -8.76 15 13 H -0.28 -11.75 7.11 99.48 0.71 -11.05 15 14 H -0.26 -11.25 7.01 99.48 0.70 -10.55 15 15 C 0.57 30.43 7.64 86.76 0.66 31.10 15 16 O -0.59 -32.72 16.65 -4.01 -0.07 -32.79 15 17 C 0.13 6.40 7.71 137.06 1.06 7.45 15 18 N -0.52 -21.12 11.41 -193.07 -2.20 -23.33 15 19 C 0.21 5.37 13.14 180.30 2.37 7.74 15 20 N -0.40 -11.33 6.93 -60.37 -0.42 -11.74 15 21 H 0.47 8.41 8.96 -219.79 -1.97 6.44 15 22 N -0.25 -10.79 9.06 -52.48 -0.48 -11.26 15 23 H 0.06 1.60 8.13 -2.39 -0.02 1.58 15 24 H 0.14 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.06 1.60 8.13 -2.38 -0.02 1.58 15 26 H 0.11 4.89 3.31 -2.39 -0.01 4.88 15 27 H 0.13 5.54 7.37 -2.39 -0.02 5.52 15 28 H 0.28 14.35 8.31 -92.70 -0.77 13.58 15 29 H 0.29 2.99 8.06 -2.91 -0.02 2.97 15 Total: -1.00 -81.60 264.13 4.26 -77.35 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.78 Total: 14.72 kcal Atomic # 6 Polarization: 51.23 SS G_CDS: 7.42 Total: 58.65 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -3.83 Total: -119.40 kcal Atomic # 8 Polarization: -72.39 SS G_CDS: -0.25 Total: -72.64 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.70 Total: 41.33 kcal Total: -81.60 4.26 -77.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116336599.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.479 kcal (2) G-P(sol) polarization free energy of solvation -81.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds