Wall clock time and date at job start Sun Mar 29 2020 23:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38616 * 120.45411 * 2 1 4 4 C 1.38570 * 118.40348 * 180.02562 * 3 2 1 5 5 N 1.32346 * 119.10622 * 359.97438 * 4 3 2 6 6 C 1.31782 * 120.81936 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.12317 * 179.97438 * 6 5 4 8 8 S 1.81401 * 109.46970 * 90.00576 * 7 6 5 9 9 O 1.42105 * 109.47394 * 63.60468 * 8 7 6 10 10 C 1.81391 * 103.00187 * 179.97438 * 8 7 6 11 11 C 1.53006 * 109.47235 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 59.99696 * 16 14 12 18 18 H 1.48506 * 109.47297 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47261 * 299.99689 * 16 14 12 20 20 N 1.31815 * 121.74975 * 0.27655 * 6 5 4 21 21 H 1.08998 * 109.47100 * 89.99590 * 1 2 3 22 22 H 1.09000 * 109.47425 * 210.00141 * 1 2 3 23 23 H 1.09006 * 109.46849 * 330.00057 * 1 2 3 24 24 H 1.08007 * 120.79515 * 0.02643 * 3 2 1 25 25 H 1.08005 * 120.44833 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47487 * 330.00191 * 7 6 5 27 27 H 1.09006 * 109.46881 * 209.99903 * 7 6 5 28 28 H 1.09001 * 109.47423 * 60.00142 * 10 8 7 29 29 H 1.09001 * 109.47260 * 300.00005 * 10 8 7 30 30 H 1.09001 * 109.47002 * 299.99604 * 11 10 8 31 31 H 1.08993 * 109.46955 * 60.00042 * 11 10 8 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2096 1.1949 0.0000 4 6 3.5944 1.1453 -0.0005 5 7 4.1964 -0.0333 -0.0005 6 6 3.4956 -1.1493 -0.0005 7 6 4.2205 -2.4705 -0.0011 8 16 4.5118 -3.0011 1.7090 9 8 3.2657 -3.2246 2.3545 10 6 5.3780 -4.5816 1.5040 11 6 5.6998 -5.1691 2.8796 12 6 6.4200 -6.4818 2.7093 13 1 6.6271 -6.8595 1.7189 14 6 6.8135 -7.2011 3.8177 15 7 6.5608 -6.7414 5.0237 16 14 7.7056 -8.8287 3.6066 17 1 8.9675 -8.6078 2.8557 18 1 8.0179 -9.3989 4.9418 19 1 6.8410 -9.7732 2.8545 20 7 2.1775 -1.1407 -0.0059 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5139 24 1 1.6901 2.1418 0.0004 25 1 4.1747 2.0563 -0.0001 26 1 5.1753 -2.3609 -0.5152 27 1 3.6147 -3.2171 -0.5149 28 1 6.3040 -4.4196 0.9521 29 1 4.7431 -5.2751 0.9526 30 1 6.3346 -4.4757 3.4313 31 1 4.7737 -5.3312 3.4310 32 1 6.8373 -7.2476 5.8035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116761263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:55 Heat of formation + Delta-G solvation = -1.695095 kcal Electronic energy + Delta-G solvation = -15686.238764 eV Core-core repulsion = 12966.493064 eV Total energy + Delta-G solvation = -2719.745700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12726 -35.14990 -34.62522 -33.66500 -33.45954 -30.87149 -29.38166 -28.25387 -25.30640 -23.62487 -22.41265 -21.05499 -17.78113 -17.10319 -16.54127 -16.37049 -15.52210 -15.41291 -14.54874 -14.33200 -14.25273 -13.99729 -13.48411 -13.21585 -12.90401 -12.77532 -12.51435 -12.30064 -11.64142 -11.27192 -10.98751 -10.93314 -10.74272 -10.65422 -10.20829 -10.11391 -9.73173 -9.39436 -9.29638 -8.92310 -8.39560 -7.68826 -6.02549 -4.06896 0.69838 0.99213 1.98704 3.13102 3.32515 3.37062 3.39411 3.70212 3.74098 3.95311 4.33282 4.35028 4.45249 4.79850 4.93479 5.10831 5.22909 5.28483 5.32240 5.32789 5.64158 5.73985 5.81369 5.97323 6.15933 6.32324 6.81843 6.95588 7.50974 7.62521 7.92312 8.04780 8.33419 8.97509 9.57085 11.08102 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.054250 B = 0.003918 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.001650 B = 7145.254565 C = 7289.559051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.178 3.822 3 C -0.242 4.242 4 C 0.153 3.847 5 N -0.518 5.518 6 C 0.354 3.646 7 C -0.398 4.398 8 S 1.237 4.763 9 O -0.836 6.836 10 C -0.416 4.416 11 C 0.038 3.962 12 C -0.519 4.519 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.277 1.277 20 N -0.514 5.514 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.140 0.860 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.023 0.977 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.739 17.940 -11.020 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.265 4.265 4 C -0.013 4.013 5 N -0.233 5.233 6 C 0.087 3.913 7 C -0.531 4.531 8 S 1.435 4.565 9 O -0.831 6.831 10 C -0.556 4.556 11 C 0.000 4.000 12 C -0.559 4.559 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.203 1.203 20 N -0.230 5.230 21 H 0.102 0.898 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.164 0.836 25 H 0.188 0.812 26 H 0.158 0.842 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.551 17.520 -10.041 20.942 hybrid contribution -1.152 -1.601 -1.263 2.342 sum -6.703 15.919 -11.304 20.642 Atomic orbital electron populations 1.20801 0.87962 1.04270 1.03501 1.21778 0.97699 0.88184 0.89190 1.22710 0.96764 1.00302 1.06713 1.23249 0.92117 0.96162 0.89786 1.68233 1.41462 0.98507 1.15112 1.22118 0.86198 0.93151 0.89880 1.26761 1.05544 0.95801 1.25010 1.71022 0.99590 1.02513 0.83410 1.93102 1.43610 1.85079 1.61285 1.27625 1.07771 1.12413 1.07771 1.18796 0.97500 0.96195 0.87552 1.21113 1.37286 1.04818 0.92678 0.92448 1.25041 0.96070 0.98091 0.95236 1.69947 1.46739 1.38873 0.97614 0.86594 0.80120 0.83668 0.77244 1.20068 1.21180 1.20292 1.68130 1.09731 1.30595 1.14505 0.89795 0.89724 0.90064 0.83622 0.81178 0.84229 0.87316 0.87325 0.90623 0.95274 0.95849 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.22 36.01 0.37 -0.59 16 2 C 0.18 2.20 6.82 -82.24 -0.56 1.64 16 3 C -0.24 -2.31 9.86 -39.32 -0.39 -2.70 16 4 C 0.15 1.54 11.30 -17.21 -0.19 1.34 16 5 N -0.52 -6.90 10.33 -10.73 -0.11 -7.01 16 6 C 0.35 5.44 6.90 -157.19 -1.08 4.36 16 7 C -0.40 -5.77 6.36 36.01 0.23 -5.54 16 8 S 1.24 21.43 13.14 -107.50 -1.41 20.02 16 9 O -0.84 -19.74 18.14 -35.23 -0.64 -20.38 16 10 C -0.42 -8.27 5.86 37.16 0.22 -8.05 16 11 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 12 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 N -0.51 -8.27 10.27 -6.99 -0.07 -8.34 16 21 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 24 H 0.15 0.84 8.06 -52.48 -0.42 0.41 16 25 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 26 H 0.14 1.57 8.14 -51.92 -0.42 1.15 16 27 H 0.11 1.63 8.14 -51.92 -0.42 1.21 16 28 H 0.11 1.82 8.14 -51.92 -0.42 1.40 16 29 H 0.07 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -38.08 298.31 -8.18 -46.25 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.19 Total: -3.24 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -1.96 Total: -22.18 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.55 Total: -41.61 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.64 Total: -20.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 21.43 SS G_CDS: -1.41 Total: 20.02 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -38.08 -8.18 -46.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116761263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.559 kcal (2) G-P(sol) polarization free energy of solvation -38.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds