Wall clock time and date at job start Sun Mar 29 2020 23:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38616 * 120.45411 * 2 1 4 4 C 1.38570 * 118.40348 * 180.02562 * 3 2 1 5 5 N 1.32346 * 119.10622 * 359.97438 * 4 3 2 6 6 C 1.31782 * 120.81936 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.12317 * 179.97438 * 6 5 4 8 8 S 1.81401 * 109.46970 * 90.00576 * 7 6 5 9 9 O 1.42105 * 109.47394 * 63.60468 * 8 7 6 10 10 C 1.81391 * 103.00187 * 179.97438 * 8 7 6 11 11 C 1.53006 * 109.47235 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 59.99696 * 16 14 12 18 18 H 1.48506 * 109.47297 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47261 * 299.99689 * 16 14 12 20 20 N 1.31815 * 121.74975 * 0.27655 * 6 5 4 21 21 H 1.08998 * 109.47100 * 89.99590 * 1 2 3 22 22 H 1.09000 * 109.47425 * 210.00141 * 1 2 3 23 23 H 1.09006 * 109.46849 * 330.00057 * 1 2 3 24 24 H 1.08007 * 120.79515 * 0.02643 * 3 2 1 25 25 H 1.08005 * 120.44833 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47487 * 330.00191 * 7 6 5 27 27 H 1.09006 * 109.46881 * 209.99903 * 7 6 5 28 28 H 1.09001 * 109.47423 * 60.00142 * 10 8 7 29 29 H 1.09001 * 109.47260 * 300.00005 * 10 8 7 30 30 H 1.09001 * 109.47002 * 299.99604 * 11 10 8 31 31 H 1.08993 * 109.46955 * 60.00042 * 11 10 8 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2096 1.1949 0.0000 4 6 3.5944 1.1453 -0.0005 5 7 4.1964 -0.0333 -0.0005 6 6 3.4956 -1.1493 -0.0005 7 6 4.2205 -2.4705 -0.0011 8 16 4.5118 -3.0011 1.7090 9 8 3.2657 -3.2246 2.3545 10 6 5.3780 -4.5816 1.5040 11 6 5.6998 -5.1691 2.8796 12 6 6.4200 -6.4818 2.7093 13 1 6.6271 -6.8595 1.7189 14 6 6.8135 -7.2011 3.8177 15 7 6.5608 -6.7414 5.0237 16 14 7.7056 -8.8287 3.6066 17 1 8.9675 -8.6078 2.8557 18 1 8.0179 -9.3989 4.9418 19 1 6.8410 -9.7732 2.8545 20 7 2.1775 -1.1407 -0.0059 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5139 24 1 1.6901 2.1418 0.0004 25 1 4.1747 2.0563 -0.0001 26 1 5.1753 -2.3609 -0.5152 27 1 3.6147 -3.2171 -0.5149 28 1 6.3040 -4.4196 0.9521 29 1 4.7431 -5.2751 0.9526 30 1 6.3346 -4.4757 3.4313 31 1 4.7737 -5.3312 3.4310 32 1 6.8373 -7.2476 5.8035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116761263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:55 Heat of formation + Delta-G solvation = -30.446991 kcal Electronic energy + Delta-G solvation = -15687.485540 eV Core-core repulsion = 12966.493064 eV Total energy + Delta-G solvation = -2720.992476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.03785 -36.83316 -35.74163 -35.50369 -34.41027 -32.88929 -30.36552 -29.12586 -27.34177 -24.53185 -23.59552 -22.77253 -18.83681 -18.71218 -18.35387 -17.28379 -16.77633 -16.55988 -16.25103 -15.85987 -15.60637 -15.25076 -14.58386 -14.41985 -14.18111 -13.96027 -13.83572 -13.47679 -13.22395 -12.98281 -12.75945 -12.62055 -12.02412 -11.96789 -11.87048 -11.61556 -11.53232 -11.07458 -10.59040 -10.25332 -10.22718 -9.20210 -8.21091 -6.34752 -0.27940 0.13401 0.65618 1.40470 1.44071 1.52114 1.72213 2.40756 2.66136 2.77827 2.93179 3.11051 3.18182 3.62359 3.93634 4.16026 4.23277 4.28241 4.35982 4.46435 4.59323 4.66281 4.72051 4.88721 5.00152 5.05382 5.41332 5.49061 5.49496 5.76186 6.08992 6.16663 6.79728 7.10041 7.34683 8.89996 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.054250 B = 0.003918 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.001650 B = 7145.254565 C = 7289.559051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.149 3.851 3 C -0.221 4.221 4 C 0.146 3.854 5 N -0.526 5.526 6 C 0.322 3.678 7 C -0.382 4.382 8 S 1.285 4.715 9 O -0.907 6.907 10 C -0.414 4.414 11 C 0.035 3.965 12 C -0.543 4.543 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.257 1.257 18 H -0.283 1.283 19 H -0.273 1.273 20 N -0.560 5.560 21 H 0.099 0.901 22 H 0.060 0.940 23 H 0.112 0.888 24 H 0.192 0.808 25 H 0.216 0.784 26 H 0.178 0.822 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.064 0.936 30 H 0.025 0.975 31 H -0.025 1.025 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 19.799 -12.901 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.004 3.996 3 C -0.243 4.243 4 C -0.019 4.019 5 N -0.242 5.242 6 C 0.054 3.946 7 C -0.519 4.519 8 S 1.485 4.515 9 O -0.903 6.903 10 C -0.553 4.553 11 C -0.003 4.003 12 C -0.582 4.582 13 H 0.085 0.915 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.181 1.181 18 H -0.208 1.208 19 H -0.198 1.198 20 N -0.277 5.277 21 H 0.118 0.882 22 H 0.079 0.921 23 H 0.131 0.869 24 H 0.209 0.791 25 H 0.233 0.767 26 H 0.195 0.805 27 H 0.119 0.881 28 H 0.164 0.836 29 H 0.083 0.917 30 H 0.043 0.957 31 H -0.007 1.007 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.706 19.371 -11.904 23.218 hybrid contribution -1.503 -1.959 -0.784 2.591 sum -6.209 17.411 -12.688 22.420 Atomic orbital electron populations 1.20899 0.86088 1.04635 1.04619 1.22454 0.99258 0.88438 0.89487 1.23202 0.96711 1.00998 1.03403 1.24104 0.93076 0.96452 0.88288 1.68240 1.41638 0.99017 1.15295 1.22073 0.86443 0.93797 0.92275 1.26523 1.07626 0.95963 1.21748 1.70130 0.97383 0.99347 0.84633 1.92985 1.46573 1.85149 1.65560 1.27515 1.09922 1.13567 1.04311 1.18658 0.94898 0.96243 0.90493 1.21620 1.37324 1.05957 0.93282 0.91457 1.26062 0.96911 1.02259 0.94808 1.70096 1.47992 1.40691 0.98586 0.85427 0.79268 0.78447 0.77459 1.18141 1.20816 1.19803 1.68074 1.10476 1.33094 1.16029 0.88217 0.92062 0.86938 0.79124 0.76728 0.80493 0.88075 0.83579 0.91653 0.95706 1.00668 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.22 71.24 0.73 -0.98 16 2 C 0.15 3.45 6.82 42.58 0.29 3.74 16 3 C -0.22 -3.43 9.86 22.44 0.22 -3.21 16 4 C 0.15 2.41 11.30 84.69 0.96 3.37 16 5 N -0.53 -12.88 10.33 -187.85 -1.94 -14.82 16 6 C 0.32 9.65 6.90 138.75 0.96 10.61 16 7 C -0.38 -10.81 6.36 71.24 0.45 -10.35 16 8 S 1.28 45.44 13.14 -56.49 -0.74 44.70 16 9 O -0.91 -45.14 18.14 -148.98 -2.70 -47.84 16 10 C -0.41 -16.65 5.86 71.98 0.42 -16.23 16 11 C 0.04 1.92 4.98 29.85 0.15 2.07 16 12 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 15 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 16 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 N -0.56 -17.97 10.27 -176.01 -1.81 -19.78 16 21 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.11 1.05 8.10 -2.38 -0.02 1.03 16 24 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 25 H 0.22 1.44 8.06 -2.91 -0.02 1.42 16 26 H 0.18 3.55 8.14 -2.39 -0.02 3.53 16 27 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.15 4.67 8.14 -2.39 -0.02 4.65 16 29 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 31 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -87.53 298.31 1.10 -86.44 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.11 Total: 4.13 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 4.87 Total: -41.70 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -3.46 Total: -92.30 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.70 Total: -47.84 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 45.44 SS G_CDS: -0.74 Total: 44.70 kcal Total: -87.53 1.10 -86.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116761263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.991 kcal (2) G-P(sol) polarization free energy of solvation -87.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds