Wall clock time and date at job start Sun Mar 29 2020 23:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37467 * 123.35496 * 2 1 4 4 C 1.33812 * 115.10037 * 179.76675 * 3 2 1 5 5 S 1.70610 * 110.95762 * 0.48949 * 4 3 2 6 6 C 1.36648 * 123.34854 * 180.29761 * 2 1 3 7 7 C 1.46582 * 125.45810 * 0.02562 * 6 2 1 8 8 O 1.21703 * 120.00181 * 359.97438 * 7 6 2 9 9 N 1.34783 * 120.00138 * 180.02562 * 7 6 2 10 10 C 1.46497 * 120.00147 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47103 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47103 * 180.02562 * 11 10 9 13 13 C 1.36935 * 120.00233 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99485 * 0.02562 * 13 12 11 15 15 C 1.38814 * 120.00257 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99634 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 119.99815 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47104 * 90.00667 * 17 15 13 19 19 H 1.48505 * 109.47227 * 210.00066 * 17 15 13 20 20 H 1.48503 * 109.47662 * 330.00597 * 17 15 13 21 21 H 1.08999 * 109.47015 * 269.70656 * 1 2 3 22 22 H 1.09000 * 109.46646 * 29.69809 * 1 2 3 23 23 H 1.09000 * 109.47248 * 149.70526 * 1 2 3 24 24 H 1.08003 * 122.44545 * 0.02562 * 3 2 1 25 25 H 1.08010 * 124.52049 * 180.22094 * 4 3 2 26 26 H 0.96998 * 119.99396 * 359.97438 * 9 7 6 27 27 H 1.09001 * 109.47465 * 300.00367 * 10 9 7 28 28 H 1.09006 * 109.46916 * 60.00310 * 10 9 7 29 29 H 1.08996 * 109.47042 * 300.00249 * 11 10 9 30 30 H 1.09000 * 109.46551 * 60.00725 * 11 10 9 31 31 H 0.97006 * 119.99776 * 0.02562 * 12 11 10 32 32 H 0.97006 * 119.99638 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.1482 0.0000 4 6 3.5871 0.9561 0.0049 5 16 3.9624 -0.7082 -0.0037 6 6 2.2583 -1.1415 -0.0059 7 6 1.7283 -2.5081 -0.0136 8 8 0.5257 -2.6945 -0.0146 9 7 2.5730 -3.5584 -0.0184 10 6 2.0434 -4.9243 -0.0255 11 6 3.2040 -5.9213 -0.0306 12 7 2.6744 -7.2872 -0.0383 13 6 3.5325 -8.3543 -0.0434 14 1 4.5998 -8.1889 -0.0413 15 6 3.0307 -9.6485 -0.0512 16 7 3.8556 -10.6741 -0.0555 17 14 1.1848 -9.9344 -0.0541 18 1 0.6966 -10.0023 -1.4549 19 1 0.8807 -11.2125 0.6384 20 1 0.5094 -8.8160 0.6519 21 1 -0.3633 -0.0053 1.0276 22 1 -0.3632 0.8927 -0.5092 23 1 -0.3634 -0.8873 -0.5184 24 1 1.8202 2.1334 0.0004 25 1 4.3206 1.7489 0.0091 26 1 3.5315 -3.4099 -0.0173 27 1 1.4325 -5.0818 0.8634 28 1 1.4334 -5.0728 -0.9166 29 1 3.8144 -5.7637 -0.9197 30 1 3.8143 -5.7729 0.8603 31 1 1.7158 -7.4357 -0.0398 32 1 3.5049 -11.5785 -0.0606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122709578.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:43 Heat of formation + Delta-G solvation = 6.455184 kcal Electronic energy + Delta-G solvation = -15717.483864 eV Core-core repulsion = 12998.091586 eV Total energy + Delta-G solvation = -2719.392277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90721 -38.04819 -35.84286 -33.99115 -31.55340 -31.09885 -29.20961 -27.37453 -24.03155 -23.29861 -21.55478 -21.31410 -19.08099 -18.31372 -17.64571 -16.01228 -15.82349 -15.57746 -15.01318 -14.38017 -14.36047 -13.80247 -13.63119 -13.45938 -13.26583 -12.66638 -12.53901 -12.32634 -11.97472 -11.61725 -11.52731 -11.14581 -10.95385 -10.85985 -10.17308 -9.93225 -9.63330 -9.22874 -8.99026 -8.86685 -8.68907 -7.31913 -5.81058 -3.18643 0.29048 1.24269 1.63264 2.14873 3.10817 3.12563 3.37897 3.41518 3.45584 4.56721 4.59133 4.70822 4.96384 5.07284 5.27129 5.36886 5.43078 5.57273 5.57947 5.63271 5.68457 5.79274 5.92610 6.10820 6.24302 6.38746 6.56122 6.58250 7.44016 7.92217 8.13780 8.36903 9.14492 9.86755 10.05038 11.36781 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.042787 B = 0.003975 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.245370 B = 7042.841861 C = 7671.337465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.023 4.023 3 C -0.149 4.149 4 C -0.229 4.229 5 S 0.199 5.801 6 C -0.271 4.271 7 C 0.589 3.411 8 O -0.528 6.528 9 N -0.719 5.719 10 C 0.109 3.891 11 C 0.148 3.852 12 N -0.752 5.752 13 C -0.249 4.249 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.885 3.115 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.276 1.276 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.094 0.906 24 H 0.144 0.856 25 H 0.169 0.831 26 H 0.398 0.602 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.364 0.636 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 25.765 0.107 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.039 4.039 3 C -0.180 4.180 4 C -0.367 4.367 5 S 0.467 5.533 6 C -0.391 4.391 7 C 0.375 3.625 8 O -0.407 6.407 9 N -0.370 5.370 10 C -0.015 4.015 11 C 0.020 3.980 12 N -0.398 5.398 13 C -0.379 4.379 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.579 5.579 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.202 1.202 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.162 0.838 25 H 0.186 0.814 26 H 0.232 0.768 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.196 0.804 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.803 24.624 0.102 24.637 hybrid contribution -1.914 0.742 0.032 2.053 sum -2.717 25.366 0.135 25.511 Atomic orbital electron populations 1.20745 0.88664 1.03904 1.03111 1.19544 0.97940 0.90372 0.95995 1.19931 0.92586 0.99666 1.05864 1.25265 1.00682 1.01893 1.08874 1.83086 1.04046 0.98165 1.67966 1.24472 0.97273 0.97465 1.19921 1.16889 0.86197 0.82758 0.76664 1.90781 1.14302 1.85243 1.50337 1.45778 1.09662 1.06383 1.75167 1.21645 0.97787 0.79317 1.02728 1.20738 0.93443 0.84441 0.99400 1.42521 1.05176 1.00785 1.91365 1.19009 0.90988 0.84104 1.43803 0.89070 1.24669 0.97308 0.95282 1.01620 1.69701 1.33192 0.97940 1.57061 0.86543 0.86670 0.77371 0.77952 1.20890 1.21567 1.20158 0.90670 0.91733 0.88762 0.83816 0.81388 0.76798 0.91024 0.91027 0.94811 0.94860 0.80353 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.55 36.01 0.34 -0.76 16 2 C -0.02 -0.26 5.90 -105.47 -0.62 -0.88 16 3 C -0.15 -1.29 9.97 -41.42 -0.41 -1.70 16 4 C -0.23 -1.78 10.92 29.18 0.32 -1.46 16 5 S 0.20 1.77 22.16 -107.50 -2.38 -0.61 16 6 C -0.27 -3.28 6.45 -36.79 -0.24 -3.52 16 7 C 0.59 8.70 7.78 -12.89 -0.10 8.60 16 8 O -0.53 -9.27 14.24 5.19 0.07 -9.20 16 9 N -0.72 -10.00 5.55 -61.64 -0.34 -10.34 16 10 C 0.11 1.77 5.79 -4.04 -0.02 1.75 16 11 C 0.15 2.77 6.37 -4.04 -0.03 2.74 16 12 N -0.75 -17.91 5.41 -59.91 -0.32 -18.23 16 13 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 14 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 15 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 16 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 17 Si 0.88 22.18 27.73 -169.99 -4.71 17.46 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.09 1.20 6.01 -51.93 -0.31 0.89 16 24 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 25 H 0.17 0.85 8.06 -52.48 -0.42 0.42 16 26 H 0.40 4.61 7.59 -40.82 -0.31 4.30 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.36 8.49 5.53 -40.82 -0.23 8.27 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -33.12 288.97 -7.39 -40.51 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.82 Total: 6.80 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.01 Total: -2.33 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.11 Total: -56.99 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.38 Total: -0.61 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.12 -7.39 -40.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122709578.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.964 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds