Wall clock time and date at job start Sun Mar 29 2020 23:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37467 * 123.35496 * 2 1 4 4 C 1.33812 * 115.10037 * 179.76675 * 3 2 1 5 5 S 1.70610 * 110.95762 * 0.48949 * 4 3 2 6 6 C 1.36648 * 123.34854 * 180.29761 * 2 1 3 7 7 C 1.46582 * 125.45810 * 0.02562 * 6 2 1 8 8 O 1.21703 * 120.00181 * 359.97438 * 7 6 2 9 9 N 1.34783 * 120.00138 * 180.02562 * 7 6 2 10 10 C 1.46497 * 120.00147 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47103 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47103 * 180.02562 * 11 10 9 13 13 C 1.36935 * 120.00233 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99485 * 0.02562 * 13 12 11 15 15 C 1.38814 * 120.00257 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99634 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 119.99815 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47104 * 90.00667 * 17 15 13 19 19 H 1.48505 * 109.47227 * 210.00066 * 17 15 13 20 20 H 1.48503 * 109.47662 * 330.00597 * 17 15 13 21 21 H 1.08999 * 109.47015 * 269.70656 * 1 2 3 22 22 H 1.09000 * 109.46646 * 29.69809 * 1 2 3 23 23 H 1.09000 * 109.47248 * 149.70526 * 1 2 3 24 24 H 1.08003 * 122.44545 * 0.02562 * 3 2 1 25 25 H 1.08010 * 124.52049 * 180.22094 * 4 3 2 26 26 H 0.96998 * 119.99396 * 359.97438 * 9 7 6 27 27 H 1.09001 * 109.47465 * 300.00367 * 10 9 7 28 28 H 1.09006 * 109.46916 * 60.00310 * 10 9 7 29 29 H 1.08996 * 109.47042 * 300.00249 * 11 10 9 30 30 H 1.09000 * 109.46551 * 60.00725 * 11 10 9 31 31 H 0.97006 * 119.99776 * 0.02562 * 12 11 10 32 32 H 0.97006 * 119.99638 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.1482 0.0000 4 6 3.5871 0.9561 0.0049 5 16 3.9624 -0.7082 -0.0037 6 6 2.2583 -1.1415 -0.0059 7 6 1.7283 -2.5081 -0.0136 8 8 0.5257 -2.6945 -0.0146 9 7 2.5730 -3.5584 -0.0184 10 6 2.0434 -4.9243 -0.0255 11 6 3.2040 -5.9213 -0.0306 12 7 2.6744 -7.2872 -0.0383 13 6 3.5325 -8.3543 -0.0434 14 1 4.5998 -8.1889 -0.0413 15 6 3.0307 -9.6485 -0.0512 16 7 3.8556 -10.6741 -0.0555 17 14 1.1848 -9.9344 -0.0541 18 1 0.6966 -10.0023 -1.4549 19 1 0.8807 -11.2125 0.6384 20 1 0.5094 -8.8160 0.6519 21 1 -0.3633 -0.0053 1.0276 22 1 -0.3632 0.8927 -0.5092 23 1 -0.3634 -0.8873 -0.5184 24 1 1.8202 2.1334 0.0004 25 1 4.3206 1.7489 0.0091 26 1 3.5315 -3.4099 -0.0173 27 1 1.4325 -5.0818 0.8634 28 1 1.4334 -5.0728 -0.9166 29 1 3.8144 -5.7637 -0.9197 30 1 3.8143 -5.7729 0.8603 31 1 1.7158 -7.4357 -0.0398 32 1 3.5049 -11.5785 -0.0606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122709578.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:43 Heat of formation + Delta-G solvation = -17.383612 kcal Electronic energy + Delta-G solvation = -15718.517591 eV Core-core repulsion = 12998.091586 eV Total energy + Delta-G solvation = -2720.426005 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.97926 -38.88960 -37.42085 -35.59302 -33.52142 -31.91167 -30.54256 -28.60220 -25.46407 -24.38491 -23.22741 -22.38758 -20.24332 -19.55623 -19.12453 -17.09032 -16.90357 -16.80433 -16.40542 -15.76671 -15.62017 -15.53611 -14.83084 -14.58984 -14.47115 -14.05110 -13.49015 -13.26834 -13.23324 -13.04937 -12.74122 -12.69581 -12.62807 -12.09985 -11.84608 -11.82329 -11.07157 -11.04716 -10.33900 -9.76138 -9.38566 -9.38171 -8.05914 -5.41677 -0.49290 0.51179 0.94479 1.39164 1.39290 1.41104 1.48312 1.96905 2.10297 2.46495 3.25869 3.64638 3.77330 3.96645 4.00208 4.15756 4.25600 4.40172 4.50904 4.67287 4.78384 4.93709 5.00088 5.05141 5.08395 5.24855 5.38886 5.52890 5.71361 6.16767 6.36045 7.01412 7.04744 7.75996 7.94340 9.14880 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.042787 B = 0.003975 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.245370 B = 7042.841861 C = 7671.337465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.025 4.025 3 C -0.160 4.160 4 C -0.211 4.211 5 S 0.224 5.776 6 C -0.314 4.314 7 C 0.586 3.414 8 O -0.565 6.565 9 N -0.713 5.713 10 C 0.124 3.876 11 C 0.149 3.851 12 N -0.758 5.758 13 C -0.240 4.240 14 H 0.063 0.937 15 C -0.059 4.059 16 N -0.980 5.980 17 Si 0.953 3.047 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.254 1.254 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.066 0.934 24 H 0.170 0.830 25 H 0.202 0.798 26 H 0.409 0.591 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.367 0.633 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 28.505 0.144 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.041 4.041 3 C -0.190 4.190 4 C -0.349 4.349 5 S 0.492 5.508 6 C -0.434 4.434 7 C 0.375 3.625 8 O -0.446 6.446 9 N -0.365 5.365 10 C 0.000 4.000 11 C 0.023 3.977 12 N -0.404 5.404 13 C -0.370 4.370 14 H 0.081 0.919 15 C -0.251 4.251 16 N -0.630 5.630 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.219 1.219 20 H -0.178 1.178 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.085 0.915 24 H 0.188 0.812 25 H 0.219 0.781 26 H 0.246 0.754 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.201 0.799 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.053 27.426 0.141 27.446 hybrid contribution -1.694 0.038 0.018 1.694 sum -2.746 27.463 0.158 27.601 Atomic orbital electron populations 1.20720 0.88869 1.03750 1.03053 1.19849 0.98255 0.91038 0.94999 1.20132 0.92775 0.99920 1.06217 1.25740 1.01133 1.01965 1.06058 1.82983 1.01388 0.99062 1.67327 1.24328 0.99623 0.96187 1.23229 1.17289 0.85757 0.83823 0.75659 1.90757 1.15812 1.86004 1.52075 1.45621 1.10324 1.05337 1.75173 1.21287 0.96497 0.80042 1.02200 1.20828 0.94381 0.82637 0.99879 1.42526 1.04912 1.01708 1.91281 1.19008 0.90465 0.85516 1.42051 0.91857 1.25483 1.02301 0.95055 1.02224 1.69868 1.35530 0.98393 1.59166 0.85448 0.80781 0.77563 0.78255 1.20283 1.21944 1.17839 0.90625 0.89223 0.91524 0.81238 0.78067 0.75432 0.91680 0.91561 0.94014 0.94114 0.79949 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.55 71.24 0.68 -1.43 16 2 C -0.03 -0.51 5.90 -20.42 -0.12 -0.63 16 3 C -0.16 -2.25 9.97 21.08 0.21 -2.04 16 4 C -0.21 -2.47 10.92 66.81 0.73 -1.74 16 5 S 0.22 3.44 22.16 -56.49 -1.25 2.19 16 6 C -0.31 -7.26 6.45 24.08 0.16 -7.10 16 7 C 0.59 17.20 7.78 86.42 0.67 17.87 16 8 O -0.57 -20.19 14.24 -4.36 -0.06 -20.25 16 9 N -0.71 -19.31 5.55 -467.15 -2.59 -21.90 16 10 C 0.12 3.96 5.79 86.38 0.50 4.46 16 11 C 0.15 5.46 6.37 86.38 0.55 6.01 16 12 N -0.76 -35.47 5.41 -343.45 -1.86 -37.33 16 13 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 14 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 15 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 16 N -0.98 -62.58 13.97 21.65 0.30 -62.28 16 17 Si 0.95 45.71 27.73 68.60 1.90 47.61 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.73 6.01 -2.39 -0.01 1.72 16 24 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 25 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 26 H 0.41 9.02 7.59 -92.71 -0.70 8.31 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.37 16.59 5.53 -92.70 -0.51 16.08 16 32 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -72.22 288.97 1.04 -71.18 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.13 Total: 21.14 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.72 Total: -0.36 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -4.15 Total: -121.51 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.06 Total: -20.25 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.61 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.25 Total: 2.19 kcal Total: -72.22 1.04 -71.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122709578.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.798 kcal (2) G-P(sol) polarization free energy of solvation -72.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds