Wall clock time and date at job start Sun Mar 29 2020 22:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38139 * 120.02379 * 2 1 4 4 C 1.38456 * 120.04657 * 180.02562 * 3 2 1 5 5 F 1.35097 * 119.95330 * 179.97438 * 4 3 2 6 6 C 1.38501 * 120.09366 * 359.97369 * 4 3 2 7 7 C 1.38090 * 120.04756 * 359.74603 * 6 4 3 8 8 C 1.38845 * 120.02731 * 179.97438 * 2 1 3 9 9 N 1.39972 * 120.04212 * 359.97438 * 8 2 1 10 10 C 1.34775 * 119.99902 * 135.87908 * 9 8 2 11 11 S 1.71203 * 120.00126 * 354.52827 * 10 9 8 12 12 N 1.34781 * 120.00347 * 174.25461 * 10 9 8 13 13 C 1.37041 * 120.00200 * 180.27095 * 12 10 9 14 14 H 1.08006 * 120.00377 * 0.02562 * 13 12 10 15 15 C 1.38882 * 119.99931 * 179.97438 * 13 12 10 16 16 N 1.31478 * 120.00122 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47518 * 60.00211 * 17 15 13 19 19 H 1.48497 * 109.47402 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47354 * 300.00291 * 17 15 13 21 21 H 1.08998 * 109.47002 * 270.02849 * 1 2 3 22 22 H 1.09000 * 109.46797 * 30.02317 * 1 2 3 23 23 H 1.08998 * 109.47295 * 150.02381 * 1 2 3 24 24 H 1.07995 * 119.97354 * 359.97403 * 3 2 1 25 25 H 1.08000 * 119.97560 * 180.02562 * 6 4 3 26 26 H 1.07998 * 120.02685 * 180.25237 * 7 6 4 27 27 H 0.96995 * 120.00625 * 315.87503 * 9 8 2 28 28 H 0.96996 * 119.99377 * 0.27845 * 12 10 9 29 29 H 0.96998 * 120.00232 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5827 1.1966 -0.0005 5 9 4.2568 2.3674 -0.0011 6 6 4.2777 -0.0015 -0.0005 7 6 3.5906 -1.1993 0.0053 8 6 2.2018 -1.2021 0.0005 9 7 1.5034 -2.4151 0.0016 10 6 1.8930 -3.4177 -0.8104 11 16 3.1518 -3.1625 -1.9424 12 7 1.2954 -4.6230 -0.7276 13 6 1.6954 -5.6441 -1.5495 14 1 2.4898 -5.4831 -2.2634 15 6 1.0800 -6.8861 -1.4638 16 7 0.1134 -7.0823 -0.5944 17 14 1.6257 -8.2781 -2.5836 18 1 3.0615 -8.5720 -2.3445 19 1 0.8174 -9.4903 -2.2964 20 1 1.4316 -7.8786 -4.0007 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.6581 2.1313 -0.0004 25 1 5.3577 0.0012 -0.0005 26 1 4.1329 -2.1333 0.0095 27 1 0.7391 -2.5343 0.5868 28 1 0.5822 -4.7676 -0.0863 29 1 -0.3167 -7.9496 -0.5348 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196129585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:48 Heat of formation + Delta-G solvation = -28.953708 kcal Electronic energy + Delta-G solvation = -15846.607331 eV Core-core repulsion = 13002.219303 eV Total energy + Delta-G solvation = -2844.388027 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.77366 -40.98232 -39.07102 -36.35681 -34.05951 -33.58923 -30.28556 -28.03078 -27.16339 -24.87753 -23.12643 -22.57751 -20.73074 -19.50310 -18.25503 -17.92079 -17.33813 -16.94529 -16.47909 -16.18588 -15.67722 -15.28586 -14.93180 -14.42724 -14.33041 -14.12342 -13.78392 -13.60490 -13.03451 -12.87780 -12.77410 -12.67264 -12.14591 -12.05143 -11.91984 -11.57864 -10.66134 -9.84552 -9.28989 -8.93986 -8.60486 -7.94380 -6.30610 0.05904 0.39762 0.81327 1.37003 1.46266 1.53761 1.55843 2.05217 2.32835 2.71024 2.85707 3.18092 3.37430 3.85816 3.93489 4.24809 4.41664 4.58508 4.69851 4.80583 4.97813 5.14510 5.18289 5.25832 5.28572 5.39233 5.53574 5.66891 6.06784 6.35184 6.41925 6.84876 7.05162 8.19131 Molecular weight = 254.06amu Principal moments of inertia in cm(-1) A = 0.042051 B = 0.005245 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.705824 B = 5336.763788 C = 5806.961729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.144 4.144 4 C 0.079 3.921 5 F -0.146 7.146 6 C -0.158 4.158 7 C -0.060 4.060 8 C 0.141 3.859 9 N -0.641 5.641 10 C 0.447 3.553 11 S -0.808 6.808 12 N -0.452 5.452 13 C -0.316 4.316 14 H 0.124 0.876 15 C 0.012 3.988 16 N -0.877 5.877 17 Si 1.008 2.992 18 H -0.265 1.265 19 H -0.262 1.262 20 H -0.266 1.266 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.055 0.945 24 H 0.163 0.837 25 H 0.141 0.859 26 H 0.122 0.878 27 H 0.411 0.589 28 H 0.402 0.598 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 8.868 5.653 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.082 4.082 3 C -0.164 4.164 4 C 0.059 3.941 5 F -0.125 7.125 6 C -0.179 4.179 7 C -0.083 4.083 8 C 0.045 3.955 9 N -0.274 5.274 10 C 0.084 3.916 11 S -0.680 6.680 12 N -0.053 5.053 13 C -0.451 4.451 14 H 0.141 0.859 15 C -0.197 4.197 16 N -0.510 5.510 17 Si 0.829 3.171 18 H -0.190 1.190 19 H -0.186 1.186 20 H -0.190 1.190 21 H 0.113 0.887 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.180 0.820 25 H 0.159 0.841 26 H 0.140 0.860 27 H 0.250 0.750 28 H 0.240 0.760 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.348 8.675 4.897 10.235 hybrid contribution -0.772 -0.904 0.562 1.315 sum -3.121 7.771 5.459 9.996 Atomic orbital electron populations 1.20783 0.88390 1.03632 1.03809 1.19765 0.97717 0.90104 1.00580 1.20905 0.91565 0.99173 1.04707 1.17704 0.90703 0.80732 1.04979 1.91448 1.80660 1.46106 1.94267 1.20961 1.01185 0.90494 1.05275 1.21089 0.93449 0.98327 0.95411 1.17373 0.90986 0.84106 1.02985 1.41267 1.33606 1.10873 1.41634 1.20597 0.95172 0.82959 0.92899 1.92558 1.36771 1.90922 1.47719 1.40992 1.28204 1.06348 1.29744 1.20744 1.19450 0.88411 1.16486 0.85851 1.26487 0.94378 1.00837 0.97997 1.69660 1.21205 1.27413 1.32762 0.84733 0.78976 0.75512 0.77886 1.18968 1.18590 1.19027 0.88671 0.89234 0.92589 0.81977 0.84097 0.86024 0.74987 0.76042 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.55 71.23 0.68 -1.57 15 2 C -0.08 -2.16 5.90 -19.74 -0.12 -2.28 15 3 C -0.14 -3.71 9.67 22.30 0.22 -3.50 15 4 C 0.08 2.31 7.30 22.38 0.16 2.48 15 5 F -0.15 -4.16 17.26 44.97 0.78 -3.38 15 6 C -0.16 -5.12 10.02 22.30 0.22 -4.89 15 7 C -0.06 -2.22 7.88 22.39 0.18 -2.04 15 8 C 0.14 4.86 5.81 38.14 0.22 5.08 15 9 N -0.64 -22.71 4.51 -189.94 -0.86 -23.57 15 10 C 0.45 20.16 7.70 179.05 1.38 21.54 15 11 S -0.81 -43.11 24.66 -56.49 -1.39 -44.50 15 12 N -0.45 -20.65 5.29 -193.56 -1.02 -21.67 15 13 C -0.32 -15.83 9.50 84.03 0.80 -15.03 15 14 H 0.12 6.77 6.22 -2.91 -0.02 6.75 15 15 C 0.01 0.53 5.50 84.90 0.47 1.00 15 16 N -0.88 -40.05 13.05 21.66 0.28 -39.76 15 17 Si 1.01 37.58 29.55 68.60 2.03 39.61 15 18 H -0.27 -9.98 7.11 99.48 0.71 -9.28 15 19 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 20 H -0.27 -10.02 7.11 99.48 0.71 -9.32 15 21 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.09 1.51 8.09 -2.39 -0.02 1.49 15 23 H 0.06 1.31 7.33 -2.39 -0.02 1.30 15 24 H 0.16 3.11 8.06 -2.91 -0.02 3.08 15 25 H 0.14 4.09 8.06 -2.91 -0.02 4.07 15 26 H 0.12 5.19 6.53 -2.91 -0.02 5.18 15 27 H 0.41 11.60 8.32 -92.71 -0.77 10.83 15 28 H 0.40 16.86 7.92 -92.71 -0.73 16.12 15 29 H 0.30 12.47 8.31 -92.71 -0.77 11.70 15 Total: -1.00 -61.08 271.46 3.73 -57.36 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.30 Total: 35.12 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 4.21 Total: 0.79 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.60 Total: -85.00 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: -43.11 SS G_CDS: -1.39 Total: -44.50 kcal Total: -61.08 3.73 -57.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196129585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.402 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds