Wall clock time and date at job start Sun Mar 29 2020 23:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00072 * 2 1 4 4 H 1.48494 * 109.46804 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46836 * 299.99629 * 3 2 1 6 6 H 1.48495 * 109.47166 * 59.99835 * 3 2 1 7 7 C 1.37874 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00285 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47533 * 180.02562 * 9 7 2 11 11 C 1.42894 * 114.00514 * 175.64148 * 10 9 7 12 12 H 1.09006 * 109.46942 * 350.60987 * 11 10 9 13 13 C 1.53000 * 109.47206 * 110.60815 * 11 10 9 14 14 C 1.53006 * 109.47435 * 294.78141 * 13 11 10 15 15 Cl 1.80292 * 109.47441 * 181.72117 * 14 13 11 16 16 C 1.50699 * 109.47538 * 230.61230 * 11 10 9 17 17 C 1.38237 * 119.99476 * 324.72529 * 16 11 10 18 18 C 1.38241 * 119.99849 * 179.79124 * 17 16 11 19 19 C 1.38234 * 119.99475 * 0.43612 * 18 17 16 20 20 C 1.38231 * 120.00405 * 359.81732 * 19 18 17 21 21 C 1.38230 * 120.00243 * 144.99612 * 16 11 10 22 22 H 0.97007 * 120.00121 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46783 * 60.00270 * 9 7 2 24 24 H 1.08997 * 109.47420 * 300.00244 * 9 7 2 25 25 H 1.08998 * 109.47093 * 174.78622 * 13 11 10 26 26 H 1.08999 * 109.47261 * 54.78304 * 13 11 10 27 27 H 1.09006 * 109.46862 * 61.72014 * 14 13 11 28 28 H 1.09003 * 109.47041 * 301.72740 * 14 13 11 29 29 H 1.08006 * 120.00263 * 359.97438 * 17 16 11 30 30 H 1.07996 * 120.00093 * 180.27702 * 18 17 16 31 31 H 1.08006 * 119.99854 * 179.83753 * 19 18 17 32 32 H 1.07998 * 120.00314 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.00059 * 359.97438 * 21 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 2.1795 -3.5853 0.0027 11 6 1.5679 -4.8729 0.1030 12 1 0.5075 -4.7550 0.3267 13 6 1.7295 -5.6190 -1.2229 14 6 0.9482 -4.8892 -2.3174 15 17 1.0972 -5.7960 -3.8686 16 6 2.2294 -5.6588 1.2056 17 6 3.5848 -5.5176 1.4376 18 6 4.1909 -6.2353 2.4518 19 6 3.4432 -7.1008 3.2281 20 6 2.0889 -7.2459 2.9927 21 6 1.4819 -6.5250 1.9814 22 1 -0.4851 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 1.3458 -6.6338 -1.1178 26 1 2.7849 -5.6558 -1.4928 27 1 1.3519 -3.8846 -2.4436 28 1 -0.1022 -4.8256 -2.0331 29 1 4.1698 -4.8444 0.8284 30 1 5.2490 -6.1216 2.6360 31 1 3.9172 -7.6635 4.0188 32 1 1.5046 -7.9218 3.5995 33 1 0.4237 -6.6383 1.7975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:03 Heat of formation + Delta-G solvation = -51.426231 kcal Electronic energy + Delta-G solvation = -16249.692830 eV Core-core repulsion = 13493.454169 eV Total energy + Delta-G solvation = -2756.238661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.081 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.31240 -37.18615 -35.70883 -33.33740 -32.27631 -30.69267 -30.62863 -27.45453 -25.33414 -22.73378 -22.06872 -21.99938 -20.39881 -16.96322 -16.30718 -16.09094 -15.28836 -14.81293 -14.62283 -14.45452 -13.83293 -13.68424 -13.17350 -13.04048 -12.65095 -12.44231 -12.20012 -11.70210 -11.55104 -11.12339 -10.97337 -10.89169 -10.78105 -10.46495 -10.21998 -10.08373 -10.06558 -9.20105 -8.97975 -8.70215 -8.50038 -8.27890 -6.18497 -4.20539 1.53371 1.62936 2.53103 3.25132 3.32221 3.37958 3.99354 4.27175 4.61085 4.89994 5.12739 5.14722 5.18019 5.18537 5.31014 5.41728 5.47711 5.65808 5.76577 5.83645 5.89645 6.12050 6.17594 6.28704 6.33858 6.64025 6.72206 6.84680 7.00210 7.21294 7.29497 7.72283 8.05170 8.43064 8.92053 9.44966 10.92786 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.006985 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.693371 B = 4007.898234 C = 5625.673018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.126 3.874 12 H 0.067 0.933 13 C -0.131 4.131 14 C -0.025 4.025 15 Cl -0.205 7.205 16 C -0.081 4.081 17 C -0.086 4.086 18 C -0.126 4.126 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.115 4.115 22 H 0.264 0.736 23 H 0.008 0.992 24 H 0.006 0.994 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -13.457 1.570 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.300 6.300 11 C 0.066 3.934 12 H 0.085 0.915 13 C -0.169 4.169 14 C -0.087 4.087 15 Cl -0.179 7.179 16 C -0.081 4.081 17 C -0.104 4.104 18 C -0.144 4.144 19 C -0.145 4.145 20 C -0.145 4.145 21 C -0.134 4.134 22 H 0.074 0.926 23 H 0.025 0.975 24 H 0.024 0.976 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.811 -13.359 1.436 13.727 hybrid contribution -0.025 0.897 0.054 0.899 sum 2.786 -12.462 1.490 12.856 Atomic orbital electron populations 1.69956 1.06098 1.27191 1.50370 1.24931 0.94963 0.99447 0.95006 0.86306 0.80071 0.82618 0.77689 1.19446 1.20776 1.20817 1.21064 0.94127 0.89206 1.51027 0.91428 1.20366 0.88695 0.83580 0.95422 1.87939 1.35587 1.12408 1.94058 1.20696 0.96256 0.85730 0.90694 0.91495 1.22252 1.02014 0.98999 0.93679 1.24511 1.02999 0.98167 0.83033 1.98684 1.98873 1.79553 1.40744 1.20088 0.94438 0.96675 0.96902 1.21093 0.94540 0.97610 0.97197 1.21164 0.99813 0.97180 0.96241 1.21087 0.94350 0.99306 0.99782 1.21018 0.95006 1.00204 0.98238 1.20992 0.99616 0.96933 0.95810 0.92619 0.97472 0.97588 0.90614 0.90049 0.87375 0.89216 0.85184 0.86323 0.86591 0.86425 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.54 9.43 -34.44 -0.32 -14.87 16 8 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.19 4.93 5.16 36.00 0.19 5.12 16 10 O -0.38 -8.35 8.73 -35.23 -0.31 -8.66 16 11 C 0.13 2.17 2.45 -27.88 -0.07 2.10 16 12 H 0.07 1.15 7.50 -51.93 -0.39 0.76 16 13 C -0.13 -1.95 5.03 -26.73 -0.13 -2.08 16 14 C -0.02 -0.37 6.06 37.16 0.23 -0.15 16 15 Cl -0.20 -3.00 29.15 -51.86 -1.51 -4.51 16 16 C -0.08 -1.30 5.00 -104.63 -0.52 -1.82 16 17 C -0.09 -1.37 9.35 -39.58 -0.37 -1.74 16 18 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 19 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 20 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 21 C -0.12 -1.61 9.68 -39.58 -0.38 -2.00 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.01 0.19 7.04 -51.93 -0.37 -0.17 16 24 H 0.01 0.17 8.09 -51.93 -0.42 -0.25 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.11 1.89 7.03 -51.93 -0.37 1.53 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.13 2.15 7.64 -52.48 -0.40 1.75 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -29.42 299.86 -8.71 -38.13 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.45 Total: -0.61 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.68 Total: -19.95 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.74 Total: -25.28 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.31 Total: -8.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -1.51 Total: -4.51 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.42 -8.71 -38.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.296 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds