Wall clock time and date at job start Sun Mar 29 2020 23:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00072 * 2 1 4 4 H 1.48494 * 109.46804 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46836 * 299.99629 * 3 2 1 6 6 H 1.48495 * 109.47166 * 59.99835 * 3 2 1 7 7 C 1.37874 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00285 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47533 * 180.02562 * 9 7 2 11 11 C 1.42894 * 114.00514 * 175.64148 * 10 9 7 12 12 H 1.09006 * 109.46942 * 350.60987 * 11 10 9 13 13 C 1.53000 * 109.47206 * 110.60815 * 11 10 9 14 14 C 1.53006 * 109.47435 * 294.78141 * 13 11 10 15 15 Cl 1.80292 * 109.47441 * 181.72117 * 14 13 11 16 16 C 1.50699 * 109.47538 * 230.61230 * 11 10 9 17 17 C 1.38237 * 119.99476 * 324.72529 * 16 11 10 18 18 C 1.38241 * 119.99849 * 179.79124 * 17 16 11 19 19 C 1.38234 * 119.99475 * 0.43612 * 18 17 16 20 20 C 1.38231 * 120.00405 * 359.81732 * 19 18 17 21 21 C 1.38230 * 120.00243 * 144.99612 * 16 11 10 22 22 H 0.97007 * 120.00121 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46783 * 60.00270 * 9 7 2 24 24 H 1.08997 * 109.47420 * 300.00244 * 9 7 2 25 25 H 1.08998 * 109.47093 * 174.78622 * 13 11 10 26 26 H 1.08999 * 109.47261 * 54.78304 * 13 11 10 27 27 H 1.09006 * 109.46862 * 61.72014 * 14 13 11 28 28 H 1.09003 * 109.47041 * 301.72740 * 14 13 11 29 29 H 1.08006 * 120.00263 * 359.97438 * 17 16 11 30 30 H 1.07996 * 120.00093 * 180.27702 * 18 17 16 31 31 H 1.08006 * 119.99854 * 179.83753 * 19 18 17 32 32 H 1.07998 * 120.00314 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.00059 * 359.97438 * 21 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 2.1795 -3.5853 0.0027 11 6 1.5679 -4.8729 0.1030 12 1 0.5075 -4.7550 0.3267 13 6 1.7295 -5.6190 -1.2229 14 6 0.9482 -4.8892 -2.3174 15 17 1.0972 -5.7960 -3.8686 16 6 2.2294 -5.6588 1.2056 17 6 3.5848 -5.5176 1.4376 18 6 4.1909 -6.2353 2.4518 19 6 3.4432 -7.1008 3.2281 20 6 2.0889 -7.2459 2.9927 21 6 1.4819 -6.5250 1.9814 22 1 -0.4851 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 1.3458 -6.6338 -1.1178 26 1 2.7849 -5.6558 -1.4928 27 1 1.3519 -3.8846 -2.4436 28 1 -0.1022 -4.8256 -2.0331 29 1 4.1698 -4.8444 0.8284 30 1 5.2490 -6.1216 2.6360 31 1 3.9172 -7.6635 4.0188 32 1 1.5046 -7.9218 3.5995 33 1 0.4237 -6.6383 1.7975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:03 Heat of formation + Delta-G solvation = -66.512960 kcal Electronic energy + Delta-G solvation = -16250.347040 eV Core-core repulsion = 13493.454169 eV Total energy + Delta-G solvation = -2756.892871 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52039 -38.64186 -36.99121 -35.18741 -33.96391 -31.80674 -31.72340 -29.44149 -26.72200 -24.56670 -23.36953 -23.16031 -21.66897 -18.71010 -17.81291 -17.64275 -16.62903 -16.46195 -16.16247 -15.64316 -15.18170 -15.04383 -14.62288 -14.34075 -14.16601 -13.77893 -13.46361 -13.18179 -13.14398 -12.85001 -12.65344 -12.30634 -12.16381 -11.97584 -11.70955 -11.47934 -11.34137 -11.20420 -10.88352 -10.21563 -9.76435 -9.60963 -8.32914 -6.43979 0.44951 0.55865 1.27106 1.39411 1.39556 1.53990 2.33119 2.90405 3.01625 3.08587 3.62357 3.90516 4.02299 4.14756 4.15850 4.26382 4.33425 4.38860 4.56026 4.69037 4.75838 4.78014 4.95894 5.06889 5.12070 5.20370 5.22577 5.54223 5.60661 5.66279 5.74733 5.97443 6.16492 6.53053 6.82147 7.27791 8.78938 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.006985 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.693371 B = 4007.898234 C = 5625.673018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.212 3.788 10 O -0.392 6.392 11 C 0.121 3.879 12 H 0.064 0.936 13 C -0.119 4.119 14 C -0.021 4.021 15 Cl -0.195 7.195 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.124 4.124 22 H 0.270 0.730 23 H -0.001 1.001 24 H -0.018 1.018 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 -14.478 2.518 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.137 3.863 10 O -0.312 6.312 11 C 0.062 3.938 12 H 0.082 0.918 13 C -0.156 4.156 14 C -0.084 4.084 15 Cl -0.169 7.169 16 C -0.105 4.105 17 C -0.130 4.130 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.142 4.142 22 H 0.079 0.921 23 H 0.016 0.984 24 H 0.000 1.000 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.156 0.844 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.253 -14.403 2.379 14.956 hybrid contribution -0.162 1.093 -0.211 1.125 sum 3.091 -13.310 2.168 13.835 Atomic orbital electron populations 1.70049 1.07551 1.28491 1.50594 1.25841 0.95878 1.03046 0.94067 0.85251 0.78767 0.77912 0.78229 1.18991 1.19694 1.19840 1.21402 0.94038 0.90950 1.51966 0.92245 1.19923 0.88423 0.84297 0.93671 1.87892 1.35387 1.13659 1.94280 1.20929 0.96082 0.83944 0.92817 0.91752 1.22145 1.01725 0.99675 0.92100 1.24370 1.03353 0.97008 0.83624 1.98682 1.98883 1.79163 1.40134 1.20057 0.94841 0.98000 0.97581 1.21086 0.94657 0.98702 0.98572 1.21427 1.01040 0.96827 0.95487 1.21515 0.94379 0.98441 0.99753 1.21435 0.95462 0.99722 0.97508 1.21230 1.00361 0.96674 0.95893 0.92095 0.98379 1.00020 0.88158 0.90601 0.90113 0.88391 0.87232 0.84364 0.83253 0.83212 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.44 0.28 -54.23 16 2 C 0.01 0.60 5.46 84.66 0.46 1.06 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -31.67 9.43 25.60 0.24 -31.43 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.21 11.29 5.16 71.24 0.37 11.65 16 10 O -0.39 -18.04 8.73 -148.98 -1.30 -19.34 16 11 C 0.12 4.29 2.45 29.85 0.07 4.36 16 12 H 0.06 2.28 7.50 -2.38 -0.02 2.26 16 13 C -0.12 -3.53 5.03 30.60 0.15 -3.38 16 14 C -0.02 -0.64 6.06 71.98 0.44 -0.21 16 15 Cl -0.19 -5.61 29.15 -2.72 -0.08 -5.69 16 16 C -0.10 -3.37 5.00 -19.87 -0.10 -3.47 16 17 C -0.11 -3.59 9.35 22.27 0.21 -3.38 16 18 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 19 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 20 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 21 C -0.12 -3.27 9.68 22.27 0.22 -3.06 16 22 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 23 H 0.00 -0.08 7.04 -2.38 -0.02 -0.10 16 24 H -0.02 -1.02 8.09 -2.39 -0.02 -1.04 16 25 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 2.96 7.03 -2.38 -0.02 2.94 16 28 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.11 3.84 7.64 -2.91 -0.02 3.82 16 30 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 31 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -63.83 299.86 4.74 -59.09 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.08 Total: 10.05 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 2.73 Total: -35.86 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.28 Total: -54.23 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.30 Total: -19.34 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -5.61 SS G_CDS: -0.08 Total: -5.69 kcal Total: -63.83 4.74 -59.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.428 kcal (2) G-P(sol) polarization free energy of solvation -63.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds