Wall clock time and date at job start Sun Mar 29 2020 23:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48493 * 109.47123 * 94.98851 * 3 2 1 5 5 H 1.48507 * 109.46564 * 214.98651 * 3 2 1 6 6 H 1.48498 * 109.47252 * 334.98499 * 3 2 1 7 7 C 1.37877 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00247 * 7.31203 * 7 2 1 9 9 C 1.50705 * 119.99438 * 187.31578 * 7 2 1 10 10 H 1.08999 * 109.47520 * 359.79724 * 9 7 2 11 11 O 1.42907 * 109.46859 * 119.79297 * 9 7 2 12 12 C 1.42898 * 114.00040 * 270.00171 * 11 9 7 13 13 C 1.53003 * 109.47244 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47260 * 179.97438 * 13 12 11 15 15 Cl 1.80295 * 109.47069 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46988 * 239.78884 * 9 7 2 17 17 C 1.38227 * 120.00302 * 278.54476 * 16 9 7 18 18 C 1.38237 * 119.99981 * 179.78955 * 17 16 9 19 19 C 1.38233 * 119.99927 * 0.44033 * 18 17 16 20 20 C 1.38233 * 119.99964 * 359.81409 * 19 18 17 21 21 C 1.38230 * 120.00011 * 359.97438 * 20 19 18 22 22 H 0.97001 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.46945 * 299.99856 * 12 11 9 24 24 H 1.08994 * 109.47591 * 59.99739 * 12 11 9 25 25 H 1.08996 * 109.46625 * 299.99360 * 13 12 11 26 26 H 1.08994 * 109.47281 * 59.99253 * 13 12 11 27 27 H 1.09001 * 109.46570 * 299.99995 * 14 13 12 28 28 H 1.09005 * 109.46759 * 59.99207 * 14 13 12 29 29 H 1.08000 * 119.99979 * 359.97438 * 17 16 9 30 30 H 1.08003 * 120.00172 * 180.27146 * 18 17 16 31 31 H 1.08004 * 120.00230 * 179.83553 * 19 18 17 32 32 H 1.08001 * 119.99703 * 180.02562 * 20 19 18 33 33 H 1.08002 * 120.00029 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6020 1.9856 1.3947 5 1 3.4900 1.4728 -0.8028 6 1 1.3979 2.6808 -0.5920 7 6 2.0045 -1.1941 -0.0005 8 1 1.4710 -2.1255 -0.1200 9 6 3.5023 -1.1994 0.1657 10 1 3.8602 -0.1750 0.2680 11 8 3.8491 -1.9441 1.3350 12 6 3.9146 -1.1581 2.5265 13 6 4.2924 -2.0536 3.7082 14 6 4.3631 -1.2118 4.9839 15 17 4.8075 -2.2672 6.3765 16 6 4.1395 -1.8359 -1.0426 17 6 4.2088 -3.2128 -1.1427 18 6 4.7894 -3.7967 -2.2531 19 6 5.3088 -3.0035 -3.2590 20 6 5.2442 -1.6265 -3.1564 21 6 4.6597 -1.0427 -2.0481 22 1 -0.4850 0.8400 0.0004 23 1 4.6671 -0.3786 2.4067 24 1 2.9435 -0.6998 2.7134 25 1 3.5402 -2.8332 3.8282 26 1 5.2636 -2.5115 3.5212 27 1 5.1155 -0.4324 4.8635 28 1 3.3919 -0.7535 5.1710 29 1 3.8066 -3.8325 -0.3549 30 1 4.8396 -4.8726 -2.3335 31 1 5.7648 -3.4596 -4.1253 32 1 5.6497 -1.0069 -3.9425 33 1 4.6097 0.0331 -1.9677 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225125833.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:07 Heat of formation + Delta-G solvation = -46.813648 kcal Electronic energy + Delta-G solvation = -16326.076952 eV Core-core repulsion = 13570.038307 eV Total energy + Delta-G solvation = -2756.038645 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.081 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72508 -37.03826 -36.00046 -33.48593 -32.40358 -30.89830 -30.22543 -27.24510 -25.42342 -22.83620 -21.96183 -21.22150 -20.14724 -17.25873 -16.30403 -15.88115 -15.60531 -14.83261 -14.62254 -14.18104 -13.73867 -13.48203 -13.14579 -12.82729 -12.74697 -12.55611 -12.26325 -11.69045 -11.53965 -11.23820 -11.08670 -10.64418 -10.56045 -10.42424 -10.33682 -10.24387 -9.87434 -9.49687 -8.84366 -8.56456 -8.27374 -7.85042 -6.32542 -4.34537 2.03617 2.07689 2.27928 3.06412 3.14723 3.18152 4.15741 4.32231 4.55706 4.91643 5.03739 5.23122 5.32679 5.48137 5.52954 5.60857 5.65311 5.75553 5.95729 5.98145 6.17051 6.26210 6.36692 6.41266 6.49312 6.67163 6.74002 7.08469 7.17651 7.33820 7.42073 7.68028 8.11212 8.37763 8.81342 9.28700 10.79733 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.006798 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.360870 B = 4118.117711 C = 5359.904255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.079 3.921 3 Si 0.865 3.135 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.281 1.281 7 C -0.522 4.522 8 H 0.082 0.918 9 C 0.213 3.787 10 H 0.032 0.968 11 O -0.391 6.391 12 C 0.072 3.928 13 C -0.127 4.127 14 C -0.025 4.025 15 Cl -0.195 7.195 16 C -0.034 4.034 17 C -0.100 4.100 18 C -0.126 4.126 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.128 4.128 22 H 0.268 0.732 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 -1.160 3.198 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.100 0.900 9 C 0.157 3.843 10 H 0.050 0.950 11 O -0.311 6.311 12 C -0.006 4.006 13 C -0.165 4.165 14 C -0.088 4.088 15 Cl -0.168 7.168 16 C -0.034 4.034 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.164 4.164 20 C -0.142 4.142 21 C -0.146 4.146 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.920 -1.313 3.294 10.535 hybrid contribution 0.153 1.254 -0.075 1.266 sum 10.074 -0.059 3.219 10.576 Atomic orbital electron populations 1.69895 1.06227 1.27418 1.48098 1.25110 0.94801 0.98829 0.93785 0.87070 0.80550 0.84067 0.79151 1.19748 1.18696 1.20714 1.21281 0.89025 0.95385 1.50201 0.89962 1.19061 0.94595 0.89953 0.80645 0.95041 1.87807 1.90814 1.37036 1.15481 1.22064 0.99624 0.93045 0.85874 1.21783 1.03929 0.99170 0.91602 1.24278 1.03733 0.94230 0.86561 1.98702 1.94559 1.72491 1.51075 1.20156 0.92889 0.93837 0.96533 1.20955 0.98604 0.94772 0.97476 1.21066 0.99691 0.99066 0.94629 1.20901 1.02553 0.93872 0.99067 1.20931 1.00688 0.94854 0.97736 1.20963 0.99407 0.99585 0.94658 0.92146 0.94998 0.92862 0.89868 0.90490 0.88995 0.88615 0.85959 0.86987 0.87185 0.87016 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.43 0.77 -24.81 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.86 19.96 26.96 -169.99 -4.58 15.37 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.26 -5.73 5.90 56.52 0.33 -5.39 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.20 9.16 -34.44 -0.32 -14.52 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.21 4.98 2.28 -29.03 -0.07 4.92 16 10 H 0.03 0.73 4.29 -51.93 -0.22 0.51 16 11 O -0.39 -8.56 9.24 -35.23 -0.33 -8.88 16 12 C 0.07 1.30 5.74 37.16 0.21 1.52 16 13 C -0.13 -1.85 5.71 -26.73 -0.15 -2.01 16 14 C -0.03 -0.30 6.66 37.16 0.25 -0.06 16 15 Cl -0.19 -2.45 29.15 -51.86 -1.51 -3.96 16 16 C -0.03 -0.73 4.96 -104.63 -0.52 -1.25 16 17 C -0.10 -2.01 9.36 -39.59 -0.37 -2.38 16 18 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 19 C -0.15 -2.35 10.05 -39.59 -0.40 -2.75 16 20 C -0.12 -2.11 10.05 -39.59 -0.40 -2.51 16 21 C -0.13 -2.55 9.67 -39.58 -0.38 -2.93 16 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.03 0.54 8.09 -51.92 -0.42 0.12 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.12 2.46 7.73 -52.49 -0.41 2.06 16 30 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.11 2.21 7.16 -52.49 -0.38 1.84 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -28.87 297.08 -8.24 -37.11 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.43 Total: 3.14 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.64 Total: -22.45 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.77 Total: -24.81 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.33 Total: -8.88 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.58 Total: 15.37 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.51 Total: -3.96 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.87 -8.24 -37.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225125833.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.705 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds