Wall clock time and date at job start Sun Mar 29 2020 23:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47438 * 299.99857 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00305 * 3 2 1 7 7 C 1.37882 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46964 * 60.00152 * 9 7 2 12 12 C 1.42899 * 114.00025 * 90.00040 * 11 9 7 13 13 C 1.53006 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46782 * 179.97438 * 13 12 11 15 15 Cl 1.80298 * 109.46802 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 17 17 C 1.38236 * 119.99787 * 84.72708 * 16 9 7 18 18 C 1.38241 * 119.99636 * 179.81278 * 17 16 9 19 19 C 1.38234 * 120.00115 * 0.39672 * 18 17 16 20 20 C 1.38240 * 119.99714 * 359.85290 * 19 18 17 21 21 C 1.38228 * 120.00011 * 265.00351 * 16 9 7 22 22 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47064 * 299.99806 * 12 11 9 24 24 H 1.09007 * 109.47276 * 60.00167 * 12 11 9 25 25 H 1.09000 * 109.47373 * 300.00053 * 13 12 11 26 26 H 1.08998 * 109.46522 * 60.00416 * 13 12 11 27 27 H 1.09000 * 109.47238 * 300.00170 * 14 13 12 28 28 H 1.08997 * 109.46852 * 60.00203 * 14 13 12 29 29 H 1.07996 * 120.00216 * 359.97438 * 17 16 9 30 30 H 1.08000 * 119.99857 * 180.22806 * 18 17 16 31 31 H 1.07998 * 120.00030 * 179.84064 * 19 18 17 32 32 H 1.08003 * 119.99655 * 179.97438 * 20 19 18 33 33 H 1.08004 * 120.00508 * 359.97379 * 21 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4291 -2.5746 -1.1670 12 6 1.0736 -3.1704 -2.2947 13 6 0.1055 -3.1992 -3.4791 14 6 0.7959 -3.8366 -4.6867 15 17 -0.3447 -3.8698 -6.0826 16 6 0.3851 -2.5793 1.2302 17 6 -0.8704 -2.0007 1.2308 18 6 -1.6662 -2.0776 2.3585 19 6 -1.2034 -2.7259 3.4883 20 6 0.0542 -3.3000 3.4894 21 6 0.8485 -3.2263 2.3604 22 1 -0.4850 0.8401 -0.0004 23 1 1.9552 -2.5867 -2.5596 24 1 1.3732 -4.1886 -2.0460 25 1 -0.7759 -3.7831 -3.2139 26 1 -0.1944 -2.1812 -3.7280 27 1 1.6770 -3.2523 -4.9517 28 1 1.0961 -4.8544 -4.4381 29 1 -1.2305 -1.4910 0.3495 30 1 -2.6486 -1.6288 2.3578 31 1 -1.8242 -2.7837 4.3702 32 1 0.4159 -3.8061 4.3722 33 1 1.8310 -3.6749 2.3614 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225125834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:08 Heat of formation + Delta-G solvation = -50.553308 kcal Electronic energy + Delta-G solvation = -16547.557848 eV Core-core repulsion = 13791.357040 eV Total energy + Delta-G solvation = -2756.200809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94866 -38.26817 -37.01234 -35.09692 -33.71129 -31.98312 -31.23507 -28.66055 -26.59081 -24.58486 -23.03286 -22.42130 -21.75640 -18.68201 -17.46018 -17.20294 -16.60539 -16.51717 -15.91777 -15.25526 -15.19993 -14.87899 -14.34931 -14.07531 -13.87814 -13.65186 -13.27376 -13.13839 -12.86519 -12.75139 -12.35308 -12.29965 -11.82911 -11.78054 -11.43522 -11.37242 -11.24267 -11.02887 -10.69835 -9.87526 -9.39599 -9.14825 -7.89330 -6.31906 0.83723 1.01282 1.32266 1.38344 1.41593 1.49958 2.40089 3.06765 3.32865 3.42515 3.93158 4.13401 4.27815 4.37133 4.39938 4.46065 4.55918 4.61555 4.66355 4.71884 4.91181 5.14214 5.18983 5.22675 5.27097 5.49112 5.64341 5.70550 5.90015 6.06780 6.18304 6.37837 6.54953 6.66552 7.12103 7.47144 8.90174 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.006584 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.340040 B = 4251.756144 C = 5312.910276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.565 4.565 8 H 0.052 0.948 9 C 0.244 3.756 10 H 0.019 0.981 11 O -0.391 6.391 12 C 0.068 3.932 13 C -0.116 4.116 14 C -0.014 4.014 15 Cl -0.201 7.201 16 C -0.070 4.070 17 C -0.067 4.067 18 C -0.163 4.163 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.142 4.142 22 H 0.259 0.741 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -6.836 -2.502 7.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.160 4.160 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.602 4.602 8 H 0.070 0.930 9 C 0.188 3.812 10 H 0.037 0.963 11 O -0.310 6.310 12 C -0.010 4.010 13 C -0.154 4.154 14 C -0.076 4.076 15 Cl -0.175 7.175 16 C -0.071 4.071 17 C -0.086 4.086 18 C -0.181 4.181 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.161 4.161 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.136 0.864 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.273 -6.649 -2.626 7.154 hybrid contribution 0.714 1.169 -0.051 1.370 sum 0.441 -5.480 -2.677 6.115 Atomic orbital electron populations 1.70030 1.06478 1.26004 1.46959 1.25592 0.95543 1.01548 0.93337 0.85757 0.79254 0.80532 0.77519 1.19467 1.20516 1.20940 1.21675 0.92715 0.92278 1.53518 0.93007 1.18518 0.87172 0.93807 0.81680 0.96312 1.87960 1.40958 1.81714 1.20405 1.22187 0.95284 0.96012 0.87512 1.21634 0.99116 1.01776 0.92832 1.24256 0.92982 1.05140 0.85258 1.98704 1.68393 1.99355 1.51073 1.20147 0.94773 0.95930 0.96207 1.21686 0.93644 0.93631 0.99621 1.21399 1.00204 1.01866 0.94619 1.21242 0.96769 0.99649 0.98290 1.21141 0.94990 1.02124 0.98063 1.21050 0.99925 1.01234 0.93853 0.93133 0.94684 0.93681 0.90944 0.92109 0.87626 0.86748 0.84533 0.86367 0.84527 0.84297 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.60 8.50 21.45 0.18 -46.42 16 2 C 0.04 2.34 5.24 84.66 0.44 2.78 16 3 Si 0.94 42.54 29.54 68.60 2.03 44.57 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.56 -30.15 8.89 25.60 0.23 -29.93 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.24 12.08 2.59 29.10 0.08 12.16 16 10 H 0.02 0.88 7.70 -2.39 -0.02 0.87 16 11 O -0.39 -18.84 8.53 -148.98 -1.27 -20.11 16 12 C 0.07 2.52 5.74 71.98 0.41 2.94 16 13 C -0.12 -3.60 5.71 30.60 0.17 -3.43 16 14 C -0.01 -0.32 6.66 71.98 0.48 0.16 16 15 Cl -0.20 -5.06 29.15 -2.72 -0.08 -5.14 16 16 C -0.07 -3.37 4.80 -19.87 -0.10 -3.46 16 17 C -0.07 -3.23 7.46 22.27 0.17 -3.06 16 18 C -0.16 -6.68 10.05 22.27 0.22 -6.46 16 19 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 20 C -0.15 -5.23 10.05 22.27 0.22 -5.00 16 21 C -0.14 -5.95 9.68 22.27 0.22 -5.73 16 22 H 0.26 13.51 8.31 -92.71 -0.77 12.73 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.49 8.09 -2.38 -0.02 1.47 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.14 7.32 5.50 -2.91 -0.02 7.30 16 30 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 31 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 32 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 33 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -59.13 294.29 4.71 -54.42 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.08 Total: 16.55 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 2.77 Total: -43.88 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.18 Total: -46.42 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.27 Total: -20.11 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 17 Polarization: -5.06 SS G_CDS: -0.08 Total: -5.14 kcal Total: -59.13 4.71 -54.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225125834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.868 kcal (2) G-P(sol) polarization free energy of solvation -59.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds