Wall clock time and date at job start Sun Mar 29 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34786 * 117.00183 * 2 1 4 4 O 1.21510 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.47360 * 120.00446 * 180.02562 * 3 2 1 6 6 C 1.36722 * 126.83244 * 180.32607 * 5 3 2 7 7 C 1.42196 * 103.78766 * 180.10158 * 6 5 3 8 8 C 1.48152 * 126.84735 * 179.86039 * 7 6 5 9 9 O 1.21549 * 119.99856 * 354.85754 * 8 7 6 10 10 N 1.34778 * 120.00021 * 175.13631 * 8 7 6 11 11 C 1.46499 * 119.99793 * 185.17374 * 10 8 7 12 12 C 1.36760 * 119.99903 * 5.17311 * 10 8 7 13 13 H 1.08002 * 119.99951 * 34.89185 * 12 10 8 14 14 C 1.39127 * 119.99958 * 214.89233 * 12 10 8 15 15 N 1.31303 * 120.00281 * 5.22595 * 14 12 10 16 16 Si 1.86807 * 119.99857 * 185.21950 * 14 12 10 17 17 H 1.48496 * 109.47314 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46842 * 120.00545 * 16 14 12 19 19 H 1.48507 * 109.46982 * 240.00094 * 16 14 12 20 20 N 1.31054 * 106.30281 * 359.59166 * 7 6 5 21 21 O 1.20864 * 111.80539 * 0.26721 * 20 7 6 22 22 H 1.09003 * 109.47175 * 300.00231 * 1 2 3 23 23 H 1.09005 * 109.47370 * 59.99896 * 1 2 3 24 24 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 25 25 H 1.07997 * 128.10453 * 359.95957 * 6 5 3 26 26 H 1.08999 * 109.47308 * 85.00265 * 11 10 8 27 27 H 1.09009 * 109.47042 * 205.00305 * 11 10 8 28 28 H 1.08997 * 109.47162 * 324.99535 * 11 10 8 29 29 H 0.97002 * 120.00415 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4021 2.2200 -0.0005 5 6 3.5355 1.2781 -0.0006 6 6 4.2966 2.4139 0.0056 7 6 5.6325 1.9266 -0.0007 8 6 6.8734 2.7359 -0.0007 9 8 6.8095 3.9464 -0.0893 10 7 8.0735 2.1294 0.0919 11 6 9.2932 2.9327 0.2061 12 6 8.1525 0.7641 0.0792 13 1 7.4654 0.1891 -0.5239 14 6 9.1179 0.1161 0.8432 15 7 9.8855 0.8064 1.6544 16 14 9.3218 -1.7364 0.7149 17 1 8.3428 -2.2757 -0.2628 18 1 10.6998 -2.0523 0.2604 19 1 9.0855 -2.3537 2.0447 20 7 5.5470 0.6188 -0.0005 21 8 4.3980 0.2440 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.9617 3.4406 0.0113 26 1 9.4608 3.1923 1.2514 27 1 10.1422 2.3593 -0.1664 28 1 9.1845 3.8441 -0.3818 29 1 10.5589 0.3546 2.1868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321174575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:01 Heat of formation + Delta-G solvation = -35.400423 kcal Electronic energy + Delta-G solvation = -18486.315107 eV Core-core repulsion = 15186.521869 eV Total energy + Delta-G solvation = -3299.793238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.56656 -40.36970 -38.48309 -36.67917 -34.97454 -33.42087 -32.00873 -31.54335 -28.07383 -26.81747 -25.22555 -24.15211 -23.03428 -21.53501 -19.65405 -18.71143 -17.51702 -17.22768 -16.65090 -16.41518 -16.28722 -15.12975 -14.51319 -14.45752 -14.00976 -13.80243 -13.44534 -13.32528 -12.82031 -12.41085 -11.92299 -11.60898 -11.43571 -11.24192 -11.01785 -11.00717 -10.87942 -10.41678 -10.29961 -9.90230 -9.47264 -9.25588 -8.93391 -7.80460 -6.55650 -4.19817 0.84001 2.02567 2.24478 2.72266 3.07964 3.15809 3.22209 3.33170 3.95141 4.14107 4.27745 4.64734 4.90989 4.94223 5.00406 5.05726 5.29140 5.35175 5.41615 5.90734 6.04090 6.23128 6.64875 6.81872 7.15750 7.33844 7.44002 7.64118 8.25103 8.47789 8.89156 9.24818 9.65787 10.47132 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.006431 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.750089 B = 4352.650097 C = 5320.112137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.344 6.344 3 C 0.565 3.435 4 O -0.486 6.486 5 C -0.108 4.108 6 C -0.087 4.087 7 C 0.001 3.999 8 C 0.513 3.487 9 O -0.599 6.599 10 N -0.410 5.410 11 C 0.118 3.882 12 C -0.331 4.331 13 H 0.114 0.886 14 C 0.045 3.955 15 N -0.858 5.858 16 Si 0.927 3.073 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.277 1.277 20 N -0.276 5.276 21 O 0.133 5.867 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.187 0.813 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 -3.902 -2.160 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.260 6.260 3 C 0.407 3.593 4 O -0.374 6.374 5 C -0.171 4.171 6 C -0.110 4.110 7 C -0.156 4.156 8 C 0.301 3.699 9 O -0.486 6.486 10 N -0.126 5.126 11 C -0.024 4.024 12 C -0.461 4.461 13 H 0.131 0.869 14 C -0.163 4.163 15 N -0.494 5.494 16 Si 0.752 3.248 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.203 1.203 20 N 0.025 4.975 21 O 0.051 5.949 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.124 0.876 25 H 0.204 0.796 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.881 -3.958 -2.069 11.762 hybrid contribution -0.319 -0.277 0.185 0.461 sum -11.199 -4.236 -1.884 12.121 Atomic orbital electron populations 1.23366 0.75360 1.04132 1.02851 1.86649 1.23895 1.31536 1.83923 1.19130 0.85147 0.82075 0.72922 1.90917 1.64488 1.35983 1.45971 1.22528 0.90010 0.88879 1.15642 1.22831 0.90268 1.00144 0.97714 1.23656 0.96296 0.89424 1.06179 1.16889 0.81584 0.85748 0.85651 1.90646 1.86095 1.12844 1.58987 1.43454 1.03821 1.07025 1.58264 1.21408 0.86568 0.93329 1.01122 1.20146 1.18997 0.80409 1.26550 0.86901 1.25600 0.95945 1.00909 0.93832 1.69912 1.19826 1.36925 1.22757 0.85845 0.78460 0.81665 0.78806 1.18513 1.20410 1.20282 1.74670 0.95479 1.14816 1.12548 1.85148 1.11001 1.32933 1.65768 0.91531 0.91531 0.87621 0.79571 0.92387 0.91279 0.94075 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 15 2 O -0.34 -4.34 10.58 -41.53 -0.44 -4.78 15 3 C 0.56 8.38 7.96 34.44 0.27 8.65 15 4 O -0.49 -7.78 16.70 -19.27 -0.32 -8.10 15 5 C -0.11 -1.82 7.36 -36.42 -0.27 -2.09 15 6 C -0.09 -1.63 10.78 -38.61 -0.42 -2.04 15 7 C 0.00 0.02 6.90 -82.61 -0.57 -0.55 15 8 C 0.51 13.11 7.65 -12.19 -0.09 13.02 15 9 O -0.60 -16.06 16.58 5.32 0.09 -15.97 15 10 N -0.41 -10.68 2.97 -123.17 -0.37 -11.05 15 11 C 0.12 2.86 8.70 59.85 0.52 3.39 15 12 C -0.33 -8.59 8.13 -15.02 -0.12 -8.71 15 13 H 0.11 2.89 5.76 -52.49 -0.30 2.59 15 14 C 0.05 1.14 5.18 -17.45 -0.09 1.05 15 15 N -0.86 -22.26 11.14 55.50 0.62 -21.64 15 16 Si 0.93 19.64 29.56 -169.99 -5.02 14.62 15 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 18 H -0.28 -5.78 7.11 56.52 0.40 -5.37 15 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 20 N -0.28 -6.00 8.88 33.36 0.30 -5.70 15 21 O 0.13 2.46 11.21 15.49 0.17 2.64 15 22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 15 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 15 24 H 0.11 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.19 3.14 8.06 -52.49 -0.42 2.71 15 26 H 0.06 1.45 7.73 -51.93 -0.40 1.04 15 27 H 0.07 1.65 7.29 -51.92 -0.38 1.27 15 28 H 0.04 0.94 7.50 -51.93 -0.39 0.55 15 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 15 LS Contribution 271.22 15.07 4.09 4.09 Total: -1.00 -30.08 271.22 -2.88 -32.96 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -2.30 Total: -1.13 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 0.30 Total: 14.07 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.55 Total: -38.39 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.50 Total: -26.22 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.08 -2.88 -32.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321174575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.437 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds