Wall clock time and date at job start Sun Mar 29 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34786 * 117.00183 * 2 1 4 4 O 1.21510 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.47360 * 120.00446 * 180.02562 * 3 2 1 6 6 C 1.36722 * 126.83244 * 180.32607 * 5 3 2 7 7 C 1.42196 * 103.78766 * 180.10158 * 6 5 3 8 8 C 1.48152 * 126.84735 * 179.86039 * 7 6 5 9 9 O 1.21549 * 119.99856 * 354.85754 * 8 7 6 10 10 N 1.34778 * 120.00021 * 175.13631 * 8 7 6 11 11 C 1.46499 * 119.99793 * 185.17374 * 10 8 7 12 12 C 1.36760 * 119.99903 * 5.17311 * 10 8 7 13 13 H 1.08002 * 119.99951 * 34.89185 * 12 10 8 14 14 C 1.39127 * 119.99958 * 214.89233 * 12 10 8 15 15 N 1.31303 * 120.00281 * 5.22595 * 14 12 10 16 16 Si 1.86807 * 119.99857 * 185.21950 * 14 12 10 17 17 H 1.48496 * 109.47314 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46842 * 120.00545 * 16 14 12 19 19 H 1.48507 * 109.46982 * 240.00094 * 16 14 12 20 20 N 1.31054 * 106.30281 * 359.59166 * 7 6 5 21 21 O 1.20864 * 111.80539 * 0.26721 * 20 7 6 22 22 H 1.09003 * 109.47175 * 300.00231 * 1 2 3 23 23 H 1.09005 * 109.47370 * 59.99896 * 1 2 3 24 24 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 25 25 H 1.07997 * 128.10453 * 359.95957 * 6 5 3 26 26 H 1.08999 * 109.47308 * 85.00265 * 11 10 8 27 27 H 1.09009 * 109.47042 * 205.00305 * 11 10 8 28 28 H 1.08997 * 109.47162 * 324.99535 * 11 10 8 29 29 H 0.97002 * 120.00415 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4021 2.2200 -0.0005 5 6 3.5355 1.2781 -0.0006 6 6 4.2966 2.4139 0.0056 7 6 5.6325 1.9266 -0.0007 8 6 6.8734 2.7359 -0.0007 9 8 6.8095 3.9464 -0.0893 10 7 8.0735 2.1294 0.0919 11 6 9.2932 2.9327 0.2061 12 6 8.1525 0.7641 0.0792 13 1 7.4654 0.1891 -0.5239 14 6 9.1179 0.1161 0.8432 15 7 9.8855 0.8064 1.6544 16 14 9.3218 -1.7364 0.7149 17 1 8.3428 -2.2757 -0.2628 18 1 10.6998 -2.0523 0.2604 19 1 9.0855 -2.3537 2.0447 20 7 5.5470 0.6188 -0.0005 21 8 4.3980 0.2440 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.9617 3.4406 0.0113 26 1 9.4608 3.1923 1.2514 27 1 10.1422 2.3593 -0.1664 28 1 9.1845 3.8441 -0.3818 29 1 10.5589 0.3546 2.1868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321174575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:01 Heat of formation + Delta-G solvation = -54.678518 kcal Electronic energy + Delta-G solvation = -18487.151068 eV Core-core repulsion = 15186.521869 eV Total energy + Delta-G solvation = -3300.629199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.19679 -41.48380 -40.44567 -37.76581 -36.94366 -35.04953 -33.72825 -33.29822 -28.99570 -28.65157 -27.14009 -25.46365 -24.72994 -23.08040 -21.22054 -20.35294 -19.08624 -18.46647 -18.26191 -18.14232 -17.36982 -16.76509 -16.45937 -16.16483 -15.91729 -15.09929 -14.73818 -14.59128 -14.38340 -13.87274 -13.45626 -13.30354 -13.13479 -12.94536 -12.70551 -12.37559 -12.06276 -11.97260 -11.88548 -11.52657 -11.18238 -10.99371 -10.91170 -9.79503 -8.46140 -6.19388 -0.52125 0.31860 1.06964 1.41027 1.43574 1.46110 1.58034 1.94635 2.19111 2.26654 2.55680 2.99538 3.12668 3.67003 3.76537 3.90178 4.23718 4.31330 4.40488 4.60518 4.74619 4.77511 4.84741 5.02176 5.16137 5.40510 5.69232 6.29317 6.31664 6.84636 7.00816 7.30456 7.69327 8.58138 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.006431 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.750089 B = 4352.650097 C = 5320.112137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.576 3.424 4 O -0.495 6.495 5 C -0.087 4.087 6 C -0.089 4.089 7 C -0.028 4.028 8 C 0.505 3.495 9 O -0.621 6.621 10 N -0.426 5.426 11 C 0.128 3.872 12 C -0.353 4.353 13 H 0.113 0.887 14 C 0.006 3.994 15 N -0.887 5.887 16 Si 0.991 3.009 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.275 1.275 20 N -0.294 5.294 21 O 0.157 5.843 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.139 0.861 25 H 0.202 0.798 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 -5.542 -2.347 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.260 6.260 3 C 0.418 3.582 4 O -0.384 6.384 5 C -0.151 4.151 6 C -0.111 4.111 7 C -0.183 4.183 8 C 0.294 3.706 9 O -0.509 6.509 10 N -0.142 5.142 11 C -0.014 4.014 12 C -0.482 4.482 13 H 0.130 0.870 14 C -0.199 4.199 15 N -0.523 5.523 16 Si 0.813 3.187 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.201 1.201 20 N 0.012 4.988 21 O 0.070 5.930 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.157 0.843 25 H 0.219 0.781 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.670 -5.594 -2.259 14.033 hybrid contribution 0.045 0.213 0.238 0.322 sum -12.625 -5.381 -2.022 13.872 Atomic orbital electron populations 1.23815 0.72555 1.06651 1.03543 1.86639 1.26477 1.29833 1.83097 1.18722 0.83983 0.82714 0.72793 1.90926 1.64299 1.36639 1.46515 1.22804 0.91049 0.87644 1.13581 1.22914 0.88773 1.01411 0.97998 1.23404 0.96458 0.89857 1.08583 1.17305 0.82476 0.85917 0.84914 1.90603 1.86761 1.13803 1.59760 1.43691 1.04353 1.07497 1.58650 1.21278 0.86396 0.93460 1.00294 1.20323 1.19830 0.80433 1.27570 0.86955 1.26424 0.95251 1.05059 0.93124 1.69995 1.20356 1.38614 1.23381 0.84901 0.78757 0.76309 0.78748 1.18044 1.19446 1.20077 1.74623 0.96879 1.14695 1.12575 1.85109 1.10418 1.33077 1.64392 0.90928 0.90811 0.84266 0.78106 0.93733 0.91440 0.93328 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 15 2 O -0.35 -7.58 10.58 -56.21 -0.59 -8.17 15 3 C 0.58 15.55 7.96 70.22 0.56 16.11 15 4 O -0.50 -14.59 16.70 19.80 0.33 -14.26 15 5 C -0.09 -2.79 7.36 24.32 0.18 -2.61 15 6 C -0.09 -3.22 10.78 22.90 0.25 -2.97 15 7 C -0.03 -1.24 6.90 42.88 0.30 -0.95 15 8 C 0.50 26.25 7.65 86.88 0.66 26.91 15 9 O -0.62 -33.88 16.58 -3.87 -0.06 -33.95 15 10 N -0.43 -22.65 2.97 -661.88 -1.96 -24.62 15 11 C 0.13 6.38 8.70 127.77 1.11 7.49 15 12 C -0.35 -18.45 8.13 84.14 0.68 -17.76 15 13 H 0.11 5.78 5.76 -2.91 -0.02 5.76 15 14 C 0.01 0.32 5.18 84.99 0.44 0.76 15 15 N -0.89 -46.36 11.14 21.69 0.24 -46.12 15 16 Si 0.99 39.73 29.56 68.60 2.03 41.76 15 17 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 18 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 19 H -0.28 -10.89 7.11 99.48 0.71 -10.19 15 20 N -0.29 -12.57 8.88 -48.95 -0.43 -13.00 15 21 O 0.16 5.56 11.21 65.64 0.74 6.30 15 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 15 23 H 0.07 0.88 8.14 -2.38 -0.02 0.86 15 24 H 0.14 0.88 8.14 -2.39 -0.02 0.86 15 25 H 0.20 6.55 8.06 -2.91 -0.02 6.53 15 26 H 0.04 2.29 7.73 -2.39 -0.02 2.27 15 27 H 0.07 3.30 7.29 -2.38 -0.02 3.28 15 28 H 0.05 2.27 7.50 -2.39 -0.02 2.26 15 29 H 0.28 13.52 8.31 -92.71 -0.77 12.75 15 Total: -1.00 -64.08 271.22 6.86 -57.23 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.20 Total: 6.32 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 5.38 Total: 28.52 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.16 Total: -83.74 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: 0.41 Total: -50.08 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -64.08 6.86 -57.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321174575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.549 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds