Wall clock time and date at job start Sun Mar 29 2020 23:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.35038 * 126.38357 * 2 1 4 4 H 0.96993 * 124.88428 * 0.02562 * 3 2 1 5 5 N 1.28471 * 110.22397 * 180.31973 * 3 2 1 6 6 C 1.31805 * 110.07464 * 359.72958 * 5 3 2 7 7 C 1.47712 * 126.51520 * 179.97438 * 6 5 3 8 8 O 1.21570 * 120.00049 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00042 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99804 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47027 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99849 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99941 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99960 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99785 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47335 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47331 * 120.00292 * 15 13 11 18 18 H 1.48504 * 109.47272 * 240.00424 * 15 13 11 19 19 C 1.35365 * 126.38422 * 179.86485 * 2 1 3 20 20 N 1.48007 * 127.24732 * 359.96598 * 19 2 1 21 21 O 1.21803 * 119.99745 * 269.70786 * 20 19 2 22 22 O 1.21799 * 120.00052 * 89.43689 * 20 19 2 23 23 H 1.08998 * 109.47137 * 270.14037 * 1 2 3 24 24 H 1.09000 * 109.47012 * 30.13410 * 1 2 3 25 25 H 1.08996 * 109.47305 * 150.13536 * 1 2 3 26 26 H 0.97003 * 120.00245 * 359.97438 * 9 7 6 27 27 H 1.08993 * 109.47461 * 299.99967 * 10 9 7 28 28 H 1.09002 * 109.46792 * 60.00346 * 10 9 7 29 29 H 0.96998 * 119.99877 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 0.0004 5 7 3.5420 0.7296 -0.0067 6 6 3.6320 -0.5854 -0.0056 7 6 4.8764 -1.3812 -0.0124 8 8 4.8213 -2.5956 -0.0110 9 7 6.0730 -0.7610 -0.0202 10 6 7.3071 -1.5503 -0.0263 11 6 8.4958 -0.6240 -0.0350 12 1 8.3468 0.4457 -0.0355 13 6 9.7736 -1.1421 -0.0414 14 7 9.9549 -2.4447 -0.0403 15 14 11.2469 0.0061 -0.0515 16 1 10.7768 1.4147 -0.0504 17 1 12.0745 -0.2399 1.1568 18 1 12.0608 -0.2437 -1.2682 19 6 2.3100 -1.0898 0.0026 20 7 1.8929 -2.5098 0.0066 21 8 1.7270 -3.0928 1.0631 22 8 1.7109 -3.0941 -1.0465 23 1 -0.3633 0.0025 1.0276 24 1 -0.3633 0.8888 -0.5159 25 1 -0.3634 -0.8911 -0.5117 26 1 6.1170 0.2081 -0.0217 27 1 7.3416 -2.1778 0.8642 28 1 7.3312 -2.1800 -0.9157 29 1 10.8538 -2.8092 -0.0444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326671463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:54 Heat of formation + Delta-G solvation = 30.697876 kcal Electronic energy + Delta-G solvation = -18230.438173 eV Core-core repulsion = 14965.803923 eV Total energy + Delta-G solvation = -3264.634250 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.57008 -41.60962 -38.81238 -36.27410 -34.44202 -33.62687 -32.81970 -32.29169 -28.61089 -27.42011 -26.10001 -24.50502 -22.25649 -21.64380 -19.87002 -19.01243 -18.61172 -17.87136 -17.40661 -16.67770 -16.47660 -15.86236 -15.25669 -14.45424 -14.39304 -13.98471 -13.62078 -13.36698 -12.91598 -12.05473 -11.98146 -11.75884 -11.47628 -11.06042 -10.99871 -10.95411 -10.89469 -10.40042 -10.13032 -9.81612 -9.69210 -9.43679 -8.81890 -8.06182 -6.20426 -4.28047 0.71414 0.97364 1.23290 1.28696 2.31723 3.22021 3.28292 3.31602 3.43433 3.52621 3.92631 4.00361 4.23516 4.34732 4.77175 4.85084 4.96068 5.15941 5.17904 5.44615 6.20761 6.45658 7.04717 7.15325 7.24752 7.41592 7.58531 7.79654 7.89020 8.40505 8.61015 8.86089 9.37954 10.89800 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.035725 B = 0.004911 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.582382 B = 5700.634802 C = 6345.518989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.089 3.911 3 N -0.366 5.366 4 H 0.459 0.541 5 N -0.232 5.232 6 C 0.064 3.936 7 C 0.571 3.429 8 O -0.531 6.531 9 N -0.682 5.682 10 C 0.247 3.753 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.065 3.935 14 N -0.883 5.883 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.109 4.109 20 N 0.061 4.939 21 O -0.128 6.128 22 O -0.130 6.130 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.399 0.601 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.015 10.187 0.114 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.042 4.042 3 N -0.080 5.080 4 H 0.307 0.693 5 N -0.066 5.066 6 C -0.100 4.100 7 C 0.351 3.649 8 O -0.407 6.407 9 N -0.330 5.330 10 C 0.127 3.873 11 C -0.584 4.584 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.520 5.520 15 Si 0.733 3.267 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.202 4.202 20 N 0.594 4.406 21 O -0.352 6.352 22 O -0.354 6.354 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.233 0.767 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.923 10.859 0.106 20.956 hybrid contribution 0.202 0.562 -0.009 0.597 sum -17.721 11.421 0.097 21.083 Atomic orbital electron populations 1.20660 0.84613 1.05537 1.05032 1.20844 0.95730 0.85506 1.02071 1.43149 1.02712 1.09376 1.52797 0.69349 1.73899 1.00710 1.13025 1.18943 1.22433 0.93724 0.89307 1.04577 1.16863 0.81844 0.86543 0.79625 1.90868 1.86278 1.12302 1.51274 1.46383 1.05915 1.11202 1.69466 1.19315 0.78034 0.91555 0.98410 1.21213 0.90416 0.93102 1.53643 0.91656 1.24949 0.99110 0.95330 0.94561 1.69980 1.22595 1.10886 1.48562 0.86322 0.81988 0.80572 0.77804 1.19612 1.20728 1.20722 1.20518 0.94175 0.83363 1.22165 1.42065 0.97489 1.00632 1.00392 1.94555 1.53218 1.66777 1.20678 1.94554 1.52960 1.66685 1.21158 0.88420 0.88997 0.88969 0.76667 0.94793 0.94799 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.44 36.01 0.38 -0.16 15 2 C 0.09 0.89 7.23 -82.20 -0.59 0.29 15 3 N -0.37 -3.18 6.83 33.50 0.23 -2.95 15 4 H 0.46 1.64 8.96 -190.44 -1.71 -0.07 15 5 N -0.23 -3.14 11.92 33.42 0.40 -2.74 15 6 C 0.06 1.12 7.13 -82.77 -0.59 0.53 15 7 C 0.57 12.57 7.82 -12.39 -0.10 12.48 15 8 O -0.53 -13.71 16.47 5.30 0.09 -13.62 15 9 N -0.68 -15.15 5.55 -62.47 -0.35 -15.50 15 10 C 0.25 6.62 5.43 -5.19 -0.03 6.59 15 11 C -0.55 -14.86 9.28 -34.44 -0.32 -15.18 15 12 H 0.07 1.67 7.60 -52.48 -0.40 1.27 15 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 14 N -0.88 -26.01 13.29 55.43 0.74 -25.28 15 15 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 15 16 H -0.27 -6.05 7.11 56.52 0.40 -5.64 15 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 19 C -0.11 -1.70 6.75 -79.74 -0.54 -2.24 15 20 N 0.06 1.08 3.94 34.07 0.13 1.22 15 21 O -0.13 -2.36 19.25 -29.46 -0.57 -2.93 15 22 O -0.13 -2.39 19.25 -29.46 -0.57 -2.96 15 23 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 15 24 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 15 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.40 7.82 8.05 -40.82 -0.33 7.49 15 27 H 0.03 1.00 8.14 -51.93 -0.42 0.57 15 28 H 0.03 0.99 8.14 -51.93 -0.42 0.57 15 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -35.40 280.51 -6.26 -41.66 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.68 Total: -0.96 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.89 Total: 4.00 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 1.15 Total: -45.25 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -1.05 Total: -19.51 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.40 -6.26 -41.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.358 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds