Wall clock time and date at job start Sun Mar 29 2020 23:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.35038 * 126.38357 * 2 1 4 4 H 0.96993 * 124.88428 * 0.02562 * 3 2 1 5 5 N 1.28471 * 110.22397 * 180.31973 * 3 2 1 6 6 C 1.31805 * 110.07464 * 359.72958 * 5 3 2 7 7 C 1.47712 * 126.51520 * 179.97438 * 6 5 3 8 8 O 1.21570 * 120.00049 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00042 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99804 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47027 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99849 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99941 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99960 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99785 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47335 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47331 * 120.00292 * 15 13 11 18 18 H 1.48504 * 109.47272 * 240.00424 * 15 13 11 19 19 C 1.35365 * 126.38422 * 179.86485 * 2 1 3 20 20 N 1.48007 * 127.24732 * 359.96598 * 19 2 1 21 21 O 1.21803 * 119.99745 * 269.70786 * 20 19 2 22 22 O 1.21799 * 120.00052 * 89.43689 * 20 19 2 23 23 H 1.08998 * 109.47137 * 270.14037 * 1 2 3 24 24 H 1.09000 * 109.47012 * 30.13410 * 1 2 3 25 25 H 1.08996 * 109.47305 * 150.13536 * 1 2 3 26 26 H 0.97003 * 120.00245 * 359.97438 * 9 7 6 27 27 H 1.08993 * 109.47461 * 299.99967 * 10 9 7 28 28 H 1.09002 * 109.46792 * 60.00346 * 10 9 7 29 29 H 0.96998 * 119.99877 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 0.0004 5 7 3.5420 0.7296 -0.0067 6 6 3.6320 -0.5854 -0.0056 7 6 4.8764 -1.3812 -0.0124 8 8 4.8213 -2.5956 -0.0110 9 7 6.0730 -0.7610 -0.0202 10 6 7.3071 -1.5503 -0.0263 11 6 8.4958 -0.6240 -0.0350 12 1 8.3468 0.4457 -0.0355 13 6 9.7736 -1.1421 -0.0414 14 7 9.9549 -2.4447 -0.0403 15 14 11.2469 0.0061 -0.0515 16 1 10.7768 1.4147 -0.0504 17 1 12.0745 -0.2399 1.1568 18 1 12.0608 -0.2437 -1.2682 19 6 2.3100 -1.0898 0.0026 20 7 1.8929 -2.5098 0.0066 21 8 1.7270 -3.0928 1.0631 22 8 1.7109 -3.0941 -1.0465 23 1 -0.3633 0.0025 1.0276 24 1 -0.3633 0.8888 -0.5159 25 1 -0.3634 -0.8911 -0.5117 26 1 6.1170 0.2081 -0.0217 27 1 7.3416 -2.1778 0.8642 28 1 7.3312 -2.1800 -0.9157 29 1 10.8538 -2.8092 -0.0444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326671463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:54 Heat of formation + Delta-G solvation = 2.403799 kcal Electronic energy + Delta-G solvation = -18231.665096 eV Core-core repulsion = 14965.803923 eV Total energy + Delta-G solvation = -3265.861173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.64664 -42.94019 -40.62933 -37.66061 -36.42064 -34.75769 -34.27814 -33.83331 -29.94724 -29.01752 -27.24345 -26.12917 -24.10867 -22.82974 -21.58698 -20.13121 -19.97783 -19.32849 -18.76623 -17.89251 -17.74910 -17.54289 -17.15333 -16.27997 -16.19087 -15.10763 -14.62320 -14.24660 -14.13895 -14.00026 -13.74469 -13.00232 -12.89105 -12.81194 -12.78484 -12.37817 -12.32538 -12.28414 -11.60710 -11.47507 -11.30237 -10.89269 -10.78744 -10.08478 -8.33350 -6.51035 -0.69922 -0.15109 0.07312 0.13094 1.38007 1.42571 1.43532 1.57104 1.84702 1.98171 2.37222 2.84332 3.01814 3.06322 3.25141 3.69266 3.97851 4.43221 4.49614 4.85940 4.96540 5.10690 5.11664 5.23922 5.44760 5.55252 5.74403 6.08505 6.36640 6.51223 6.59680 6.99907 7.23015 8.79219 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.035725 B = 0.004911 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.582382 B = 5700.634802 C = 6345.518989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.134 3.866 3 N -0.328 5.328 4 H 0.486 0.514 5 N -0.218 5.218 6 C 0.029 3.971 7 C 0.570 3.430 8 O -0.581 6.581 9 N -0.677 5.677 10 C 0.264 3.736 11 C -0.559 4.559 12 H 0.085 0.915 13 C 0.005 3.995 14 N -0.929 5.929 15 Si 0.988 3.012 16 H -0.252 1.252 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.148 4.148 20 N 0.062 4.938 21 O -0.147 6.147 22 O -0.149 6.149 23 H 0.121 0.879 24 H 0.139 0.861 25 H 0.084 0.916 26 H 0.414 0.586 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 14.067 0.133 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.003 3.997 3 N -0.048 5.048 4 H 0.341 0.659 5 N -0.054 5.054 6 C -0.134 4.134 7 C 0.354 3.646 8 O -0.460 6.460 9 N -0.326 5.326 10 C 0.142 3.858 11 C -0.596 4.596 12 H 0.103 0.897 13 C -0.195 4.195 14 N -0.567 5.567 15 Si 0.811 3.189 16 H -0.176 1.176 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.241 4.241 20 N 0.592 4.408 21 O -0.370 6.370 22 O -0.371 6.371 23 H 0.139 0.861 24 H 0.157 0.843 25 H 0.102 0.898 26 H 0.251 0.749 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.404 14.803 0.125 24.406 hybrid contribution 0.502 -0.575 -0.012 0.764 sum -18.902 14.228 0.113 23.658 Atomic orbital electron populations 1.21021 0.80500 1.07451 1.07044 1.21457 0.97455 0.83460 0.97369 1.43276 1.01038 1.10636 1.49867 0.65927 1.73796 1.03073 1.10774 1.17770 1.21522 0.92172 0.90559 1.09133 1.17378 0.83082 0.86403 0.77772 1.90825 1.87347 1.14769 1.53053 1.46049 1.04997 1.11503 1.70020 1.18776 0.80529 0.91531 0.94978 1.21575 0.90562 0.93937 1.53543 0.89679 1.26083 1.02721 0.97043 0.93610 1.70139 1.23660 1.13375 1.49501 0.85057 0.77242 0.78791 0.77796 1.17585 1.20305 1.20298 1.20694 0.94576 0.82791 1.26065 1.42339 0.96817 1.01731 0.99898 1.94528 1.53813 1.67827 1.20793 1.94528 1.53585 1.67736 1.21270 0.86090 0.84316 0.89767 0.74934 0.98516 0.98530 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.44 71.24 0.74 0.15 15 2 C 0.13 2.19 7.23 41.40 0.30 2.49 15 3 N -0.33 -4.28 6.83 -47.92 -0.33 -4.60 15 4 H 0.49 0.62 8.96 -220.00 -1.97 -1.35 15 5 N -0.22 -5.38 11.92 -48.18 -0.57 -5.95 15 6 C 0.03 1.00 7.13 42.46 0.30 1.30 15 7 C 0.57 26.21 7.82 86.75 0.68 26.89 15 8 O -0.58 -32.00 16.47 -3.93 -0.06 -32.06 15 9 N -0.68 -31.15 5.55 -469.83 -2.61 -33.76 15 10 C 0.26 14.94 5.43 85.63 0.46 15.41 15 11 C -0.56 -30.85 9.28 25.60 0.24 -30.61 15 12 H 0.09 4.26 7.60 -2.91 -0.02 4.24 15 13 C 0.01 0.30 5.46 84.66 0.46 0.77 15 14 N -0.93 -56.40 13.29 21.45 0.28 -56.12 15 15 Si 0.99 42.47 29.54 68.60 2.03 44.50 15 16 H -0.25 -9.99 7.11 99.48 0.71 -9.29 15 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 19 C -0.15 -4.49 6.75 36.52 0.25 -4.24 15 20 N 0.06 2.26 3.94 -46.14 -0.18 2.07 15 21 O -0.15 -5.59 19.25 18.88 0.36 -5.23 15 22 O -0.15 -5.68 19.25 18.89 0.36 -5.32 15 23 H 0.12 0.33 8.14 -2.39 -0.02 0.31 15 24 H 0.14 -0.39 8.14 -2.39 -0.02 -0.41 15 25 H 0.08 0.76 8.14 -2.39 -0.02 0.74 15 26 H 0.41 16.23 8.05 -92.71 -0.75 15.49 15 27 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 Total: -1.00 -83.73 280.51 1.23 -82.50 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -1.49 Total: 1.81 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 3.44 Total: 12.15 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -3.40 Total: -98.36 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: 0.66 Total: -42.60 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -83.73 1.23 -82.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.905 kcal (2) G-P(sol) polarization free energy of solvation -83.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds