Wall clock time and date at job start Sun Mar 29 2020 23:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47462 * 2 1 4 4 C 1.50703 * 109.47517 * 239.99795 * 2 1 3 5 5 H 1.07998 * 119.99896 * 240.00889 * 4 2 1 6 6 C 1.37875 * 120.00021 * 60.00155 * 4 2 1 7 7 N 1.31519 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47083 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47366 * 120.00124 * 8 6 4 11 11 H 1.48496 * 109.47245 * 240.00202 * 8 6 4 12 12 N 1.46508 * 109.46727 * 120.00121 * 2 1 3 13 13 N 1.29000 * 119.99441 * 270.00031 * 12 2 1 14 14 C 1.31812 * 119.99779 * 184.95420 * 13 12 2 15 15 C 1.47703 * 121.49137 * 186.59536 * 14 13 12 16 16 O 1.21623 * 120.92264 * 0.04594 * 15 14 13 17 17 N 1.34907 * 118.15227 * 180.02562 * 15 14 13 18 18 C 1.34017 * 121.54969 * 0.02562 * 17 15 14 19 19 O 1.21536 * 118.21118 * 179.97438 * 18 17 15 20 20 N 1.34026 * 123.57753 * 359.97438 * 18 17 15 21 21 C 1.34901 * 121.54883 * 0.02562 * 20 18 17 22 22 O 1.21623 * 120.92363 * 180.02562 * 21 20 18 23 23 H 1.08990 * 109.47356 * 300.00265 * 1 2 3 24 24 H 1.09002 * 109.46663 * 60.00465 * 1 2 3 25 25 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99458 * 180.02562 * 7 6 4 27 27 H 0.96997 * 120.00303 * 90.00166 * 12 2 1 28 28 H 0.96993 * 119.22122 * 179.72286 * 17 15 14 29 29 H 0.96999 * 119.22711 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6995 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 3.1457 -2.2878 -3.6036 10 1 1.1664 -1.5868 -4.8161 11 1 3.1469 -0.1875 -4.8163 12 7 2.0183 -0.6907 1.1962 13 7 2.2332 -0.0272 2.2814 14 6 2.7642 -0.6285 3.3273 15 6 2.8925 0.0576 4.6291 16 8 2.5086 1.2027 4.7725 17 7 3.4469 -0.6214 5.6545 18 6 3.8742 -1.8834 5.5104 19 8 4.3646 -2.4376 6.4745 20 7 3.7902 -2.5677 4.3611 21 6 3.2587 -2.0182 3.2496 22 8 3.1877 -2.6499 2.2127 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7092 1.1613 -3.4845 27 1 2.1799 -1.6468 1.1723 28 1 3.5424 -0.1844 6.5152 29 1 4.1201 -3.4793 4.3275 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330284629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:33 Heat of formation + Delta-G solvation = -53.117934 kcal Electronic energy + Delta-G solvation = -18473.999773 eV Core-core repulsion = 15205.730997 eV Total energy + Delta-G solvation = -3268.268776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.17255 -39.86410 -39.00491 -37.86641 -35.30499 -34.39322 -34.28432 -31.73286 -29.00516 -25.79444 -25.20266 -23.72886 -23.52934 -21.24697 -20.25597 -19.19644 -17.80412 -16.93670 -16.93305 -16.81384 -16.10672 -15.56575 -15.20765 -14.72439 -14.61894 -14.50574 -13.85570 -13.46953 -12.93132 -12.22274 -11.86443 -11.40914 -11.30382 -11.08200 -11.00474 -10.66457 -10.54042 -10.50700 -10.39807 -10.39769 -9.61957 -9.39062 -8.80444 -8.02240 -6.43170 -4.54780 0.87193 2.07898 2.09601 2.20468 2.86501 3.10659 3.19552 3.23611 3.49233 3.60950 3.89234 4.15324 4.91266 5.01507 5.40129 5.57295 5.99300 6.12367 6.40068 6.55949 6.57278 6.94687 7.04465 7.17169 7.25760 7.39872 7.49388 7.56581 7.77838 7.96349 8.48328 8.60078 9.14042 10.63025 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.005325 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.986244 B = 5257.090026 C = 5818.652238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.255 3.745 3 H 0.068 0.932 4 C -0.546 4.546 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.880 5.880 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.429 5.429 13 N -0.017 5.017 14 C -0.247 4.247 15 C 0.602 3.398 16 O -0.486 6.486 17 N -0.660 5.660 18 C 0.721 3.279 19 O -0.546 6.546 20 N -0.660 5.660 21 C 0.558 3.442 22 O -0.512 6.512 23 H 0.025 0.975 24 H 0.105 0.895 25 H 0.037 0.963 26 H 0.270 0.730 27 H 0.404 0.596 28 H 0.435 0.565 29 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -3.991 9.926 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.156 3.844 3 H 0.085 0.915 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.132 4.132 7 N -0.516 5.516 8 Si 0.738 3.262 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.186 5.186 13 N 0.127 4.873 14 C -0.410 4.410 15 C 0.392 3.608 16 O -0.356 6.356 17 N -0.332 5.332 18 C 0.421 3.579 19 O -0.420 6.420 20 N -0.330 5.330 21 C 0.351 3.649 22 O -0.386 6.386 23 H 0.044 0.956 24 H 0.124 0.876 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.255 0.745 28 H 0.278 0.722 29 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.120 -2.923 9.329 10.004 hybrid contribution 0.809 -1.770 -0.367 1.981 sum 2.929 -4.693 8.963 10.533 Atomic orbital electron populations 1.22194 0.96132 1.00588 1.02263 1.19677 0.92493 0.94840 0.77412 0.91453 1.21133 1.33882 1.14161 0.89285 0.91110 1.24842 0.94312 0.94830 0.99169 1.69865 1.35060 1.22043 1.24658 0.86220 0.78788 0.79596 0.81632 1.19426 1.20514 1.20535 1.48733 1.48694 1.13316 1.07825 1.71401 0.95617 1.27793 0.92498 1.22119 1.28067 0.94091 0.96753 1.17427 0.75950 0.85082 0.82353 1.90886 1.45892 1.15917 1.82886 1.44002 1.59114 1.13230 1.16820 1.15386 0.78070 0.81282 0.83169 1.91069 1.47251 1.67017 1.36628 1.44097 1.59695 1.19151 1.10051 1.19443 0.75988 0.86819 0.82655 1.90626 1.55810 1.63851 1.28280 0.95621 0.87631 0.94408 0.92015 0.74519 0.72245 0.72645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.29 37.16 0.35 -2.93 15 2 C 0.26 5.78 3.15 -69.08 -0.22 5.56 15 3 H 0.07 1.64 8.14 -51.93 -0.42 1.22 15 4 C -0.55 -13.38 8.74 -34.44 -0.30 -13.69 15 5 H 0.07 1.74 7.79 -52.49 -0.41 1.33 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 7 N -0.88 -22.31 11.32 55.43 0.63 -21.68 15 8 Si 0.91 19.39 29.54 -169.99 -5.02 14.37 15 9 H -0.27 -5.75 7.11 56.52 0.40 -5.34 15 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 11 H -0.28 -5.96 7.11 56.52 0.40 -5.55 15 12 N -0.43 -8.69 5.57 -5.88 -0.03 -8.72 15 13 N -0.02 -0.33 10.99 34.76 0.38 0.05 15 14 C -0.25 -4.15 7.09 -80.14 -0.57 -4.72 15 15 C 0.60 9.11 7.99 -12.34 -0.10 9.01 15 16 O -0.49 -8.61 17.85 5.26 0.09 -8.52 15 17 N -0.66 -7.74 5.16 -17.00 -0.09 -7.82 15 18 C 0.72 8.87 8.52 -88.27 -0.75 8.11 15 19 O -0.55 -7.60 17.88 5.33 0.10 -7.51 15 20 N -0.66 -7.96 5.16 -17.00 -0.09 -8.05 15 21 C 0.56 8.55 7.93 -12.33 -0.10 8.45 15 22 O -0.51 -9.02 14.64 5.26 0.08 -8.95 15 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 24 H 0.11 2.46 6.07 -51.93 -0.32 2.14 15 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.27 6.48 8.31 -40.82 -0.34 6.15 15 27 H 0.40 8.10 5.00 -190.63 -0.95 7.14 15 28 H 0.43 4.00 8.83 -40.82 -0.36 3.64 15 29 H 0.43 4.25 8.83 -40.82 -0.36 3.89 15 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -27.25 266.68 -4.52 -31.76 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -2.80 Total: 9.54 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -1.78 Total: 11.52 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.80 Total: -46.23 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.27 Total: -24.97 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.25 -4.52 -31.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330284629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.354 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds