Wall clock time and date at job start Sun Mar 29 2020 23:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34229 * 122.10652 * 2 1 4 4 S 1.71074 * 109.08830 * 179.90538 * 3 2 1 5 5 C 1.76095 * 90.30281 * 0.29690 * 4 3 2 6 6 C 1.47256 * 125.54363 * 179.83109 * 5 4 3 7 7 O 1.21618 * 120.00389 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99681 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99539 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46948 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47292 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47227 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99665 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00116 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00032 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00253 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46928 * 60.00004 * 16 14 12 18 18 H 1.48495 * 109.47164 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46753 * 300.00004 * 16 14 12 20 20 N 1.30553 * 108.91784 * 359.82484 * 5 4 3 21 21 H 1.09001 * 109.46953 * 269.73352 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.72950 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.73580 * 1 2 3 24 24 H 1.08005 * 125.45557 * 0.02562 * 3 2 1 25 25 H 0.97001 * 120.00188 * 0.02562 * 8 6 5 26 26 H 1.08999 * 109.47227 * 299.99955 * 9 8 6 27 27 H 1.09007 * 109.47395 * 60.00444 * 9 8 6 28 28 H 1.08999 * 109.47198 * 300.00068 * 10 9 8 29 29 H 1.09000 * 109.47272 * 59.99968 * 10 9 8 30 30 H 1.08999 * 109.46973 * 300.00106 * 11 10 9 31 31 H 1.08999 * 109.47465 * 60.00107 * 11 10 9 32 32 H 0.96999 * 120.00123 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2205 1.1370 0.0000 4 16 3.8872 0.7516 0.0027 5 6 3.4997 -0.9661 -0.0055 6 6 4.4801 -2.0649 -0.0111 7 8 4.0991 -3.2198 -0.0170 8 7 5.7997 -1.7905 -0.0107 9 6 6.7750 -2.8836 -0.0168 10 6 8.1909 -2.3038 -0.0156 11 6 9.2095 -3.4453 -0.0227 12 6 10.6041 -2.8742 -0.0222 13 1 10.7493 -1.8040 -0.0169 14 6 11.6946 -3.7178 -0.0274 15 7 11.5178 -5.0210 -0.0333 16 14 13.4233 -3.0099 -0.0260 17 1 13.6174 -2.1802 1.1902 18 1 14.4119 -4.1179 -0.0330 19 1 13.6146 -2.1688 -1.2348 20 7 2.2018 -1.1072 -0.0056 21 1 -0.3633 -0.0048 1.0277 22 1 -0.3634 0.8924 -0.5096 23 1 -0.3633 -0.8876 -0.5179 24 1 1.8082 2.1353 0.0004 25 1 6.1036 -0.8693 -0.0064 26 1 6.6341 -3.5012 0.8702 27 1 6.6329 -3.4924 -0.9098 28 1 8.3314 -1.6864 -0.9029 29 1 8.3333 -1.6947 0.8770 30 1 9.0691 -4.0630 0.8643 31 1 9.0670 -4.0540 -0.9156 32 1 12.2850 -5.6145 -0.0366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339974029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:51 Heat of formation + Delta-G solvation = -9.017964 kcal Electronic energy + Delta-G solvation = -15412.175513 eV Core-core repulsion = 12692.112269 eV Total energy + Delta-G solvation = -2720.063243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42248 -39.13906 -35.53324 -33.41998 -32.30812 -31.25249 -28.28124 -27.52676 -25.56513 -23.04013 -21.07193 -20.57689 -19.66932 -18.60908 -17.08662 -16.40417 -15.80807 -15.75614 -14.93124 -14.68590 -14.45514 -13.85877 -13.83781 -13.58975 -12.84078 -12.71775 -12.31809 -11.90294 -11.79212 -11.68451 -10.90736 -10.80722 -10.68618 -10.51902 -9.99408 -9.91567 -9.87443 -9.46519 -9.16729 -9.12290 -8.88899 -8.38808 -6.03479 -4.06935 -0.01013 0.89634 1.32156 2.12661 2.82963 3.12212 3.31049 3.36102 3.37760 4.16060 4.42843 4.64017 4.72258 4.85837 5.27029 5.27617 5.32318 5.49145 5.60524 5.69743 5.85629 6.07988 6.26178 6.52670 6.71321 6.93297 7.22129 7.51814 7.60657 7.72686 7.94617 8.08357 8.35410 8.99429 9.57413 11.07761 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.053859 B = 0.003368 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.749240 B = 8310.980312 C = 8799.677450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 C -0.271 4.271 4 S 0.180 5.820 5 C 0.007 3.993 6 C 0.587 3.413 7 O -0.501 6.501 8 N -0.714 5.714 9 C 0.117 3.883 10 C -0.122 4.122 11 C 0.024 3.976 12 C -0.524 4.524 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.400 5.400 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.184 0.816 25 H 0.397 0.603 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.332 14.805 0.090 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.411 4.411 4 S 0.435 5.565 5 C -0.270 4.270 6 C 0.368 3.632 7 O -0.375 6.375 8 N -0.366 5.366 9 C -0.005 4.005 10 C -0.160 4.160 11 C -0.013 4.013 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.117 5.117 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.201 0.799 25 H 0.231 0.769 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.742 13.790 0.086 22.471 hybrid contribution 0.159 0.951 0.014 0.964 sum -17.583 14.741 0.100 22.945 Atomic orbital electron populations 1.20412 0.86746 1.03578 1.03204 1.20408 0.99039 0.85948 1.02836 1.26501 0.97757 1.04774 1.12110 1.83890 1.05140 1.03432 1.64009 1.27649 0.94248 0.95666 1.09417 1.16737 0.81654 0.86542 0.78290 1.90863 1.79118 1.19452 1.48024 1.46043 1.04791 1.11382 1.74386 1.21808 0.87667 0.88269 1.02710 1.21926 0.91794 1.01154 1.01141 1.19027 0.92093 0.92419 0.97796 1.21154 0.90986 0.92896 1.51219 0.92647 1.25024 0.99321 0.94840 0.95226 1.69951 1.30778 1.02153 1.50352 0.86637 0.84076 0.78565 0.78592 1.20232 1.21267 1.20235 1.66504 1.03568 1.30386 1.11238 0.90461 0.90607 0.90278 0.79893 0.76864 0.91046 0.91048 0.92491 0.92494 0.96152 0.96150 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.28 36.01 0.37 -0.22 16 2 C 0.06 0.59 6.68 -84.48 -0.56 0.03 16 3 C -0.27 -2.28 10.82 29.32 0.32 -1.96 16 4 S 0.18 1.65 22.31 -107.50 -2.40 -0.74 16 5 C 0.01 0.10 7.46 -14.43 -0.11 -0.01 16 6 C 0.59 9.48 7.81 -12.59 -0.10 9.38 16 7 O -0.50 -10.08 17.07 5.26 0.09 -9.99 16 8 N -0.71 -10.30 5.55 -61.44 -0.34 -10.65 16 9 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 13 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 N -0.40 -5.74 10.57 -7.69 -0.08 -5.82 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 25 H 0.40 4.60 7.62 -40.82 -0.31 4.29 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -33.13 298.15 -7.40 -40.52 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.08 Total: -2.25 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.80 Total: -5.96 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.31 Total: -42.29 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.40 Total: -0.74 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.13 -7.40 -40.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339974029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.504 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds