Wall clock time and date at job start Sun Mar 29 2020 23:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34229 * 122.10652 * 2 1 4 4 S 1.71074 * 109.08830 * 179.90538 * 3 2 1 5 5 C 1.76095 * 90.30281 * 0.29690 * 4 3 2 6 6 C 1.47256 * 125.54363 * 179.83109 * 5 4 3 7 7 O 1.21618 * 120.00389 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99681 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99539 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46948 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47292 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47227 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99665 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00116 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00032 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00253 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46928 * 60.00004 * 16 14 12 18 18 H 1.48495 * 109.47164 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46753 * 300.00004 * 16 14 12 20 20 N 1.30553 * 108.91784 * 359.82484 * 5 4 3 21 21 H 1.09001 * 109.46953 * 269.73352 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.72950 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.73580 * 1 2 3 24 24 H 1.08005 * 125.45557 * 0.02562 * 3 2 1 25 25 H 0.97001 * 120.00188 * 0.02562 * 8 6 5 26 26 H 1.08999 * 109.47227 * 299.99955 * 9 8 6 27 27 H 1.09007 * 109.47395 * 60.00444 * 9 8 6 28 28 H 1.08999 * 109.47198 * 300.00068 * 10 9 8 29 29 H 1.09000 * 109.47272 * 59.99968 * 10 9 8 30 30 H 1.08999 * 109.46973 * 300.00106 * 11 10 9 31 31 H 1.08999 * 109.47465 * 60.00107 * 11 10 9 32 32 H 0.96999 * 120.00123 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2205 1.1370 0.0000 4 16 3.8872 0.7516 0.0027 5 6 3.4997 -0.9661 -0.0055 6 6 4.4801 -2.0649 -0.0111 7 8 4.0991 -3.2198 -0.0170 8 7 5.7997 -1.7905 -0.0107 9 6 6.7750 -2.8836 -0.0168 10 6 8.1909 -2.3038 -0.0156 11 6 9.2095 -3.4453 -0.0227 12 6 10.6041 -2.8742 -0.0222 13 1 10.7493 -1.8040 -0.0169 14 6 11.6946 -3.7178 -0.0274 15 7 11.5178 -5.0210 -0.0333 16 14 13.4233 -3.0099 -0.0260 17 1 13.6174 -2.1802 1.1902 18 1 14.4119 -4.1179 -0.0330 19 1 13.6146 -2.1688 -1.2348 20 7 2.2018 -1.1072 -0.0056 21 1 -0.3633 -0.0048 1.0277 22 1 -0.3634 0.8924 -0.5096 23 1 -0.3633 -0.8876 -0.5179 24 1 1.8082 2.1353 0.0004 25 1 6.1036 -0.8693 -0.0064 26 1 6.6341 -3.5012 0.8702 27 1 6.6329 -3.4924 -0.9098 28 1 8.3314 -1.6864 -0.9029 29 1 8.3333 -1.6947 0.8770 30 1 9.0691 -4.0630 0.8643 31 1 9.0670 -4.0540 -0.9156 32 1 12.2850 -5.6145 -0.0366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339974029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:50 Heat of formation + Delta-G solvation = -32.958680 kcal Electronic energy + Delta-G solvation = -15413.213660 eV Core-core repulsion = 12692.112269 eV Total energy + Delta-G solvation = -2721.101391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39442 -40.27441 -37.05489 -35.27147 -33.40088 -32.74078 -29.20051 -28.84703 -26.93546 -24.69880 -22.43757 -22.01062 -20.55103 -19.60605 -18.53107 -17.97367 -17.09037 -17.01024 -16.44952 -16.06158 -15.65406 -15.17903 -14.89902 -14.37227 -14.26664 -13.77007 -13.62104 -13.37663 -13.30180 -12.71046 -12.56823 -12.43940 -12.35981 -11.85070 -11.67717 -11.40944 -11.20079 -10.78872 -10.78378 -10.52941 -10.35970 -9.74980 -8.17697 -6.29119 -0.87031 0.07401 0.56533 1.20462 1.43414 1.46340 1.54026 1.69314 2.04275 2.43745 3.16351 3.28616 3.71821 4.10663 4.12168 4.19520 4.23229 4.53020 4.71532 4.77828 4.84127 4.87048 4.93039 5.17151 5.25287 5.28088 5.53221 5.72139 5.85939 6.16710 6.24556 6.60654 6.88447 6.90809 7.40543 8.94249 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.053859 B = 0.003368 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.749240 B = 8310.980312 C = 8799.677450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.027 3.973 3 C -0.247 4.247 4 S 0.260 5.740 5 C -0.050 4.050 6 C 0.588 3.412 7 O -0.556 6.556 8 N -0.700 5.700 9 C 0.129 3.871 10 C -0.103 4.103 11 C 0.023 3.977 12 C -0.541 4.541 13 H 0.069 0.931 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.265 1.265 20 N -0.437 5.437 21 H 0.085 0.915 22 H 0.105 0.895 23 H 0.064 0.936 24 H 0.226 0.774 25 H 0.414 0.586 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.072 0.928 30 H -0.006 1.006 31 H -0.006 1.006 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.463 18.726 0.106 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.388 4.388 4 S 0.514 5.486 5 C -0.323 4.323 6 C 0.371 3.629 7 O -0.434 6.434 8 N -0.352 5.352 9 C 0.006 3.994 10 C -0.141 4.141 11 C -0.014 4.014 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.190 1.190 20 N -0.155 5.155 21 H 0.103 0.897 22 H 0.124 0.876 23 H 0.083 0.917 24 H 0.243 0.757 25 H 0.251 0.749 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.860 17.759 0.102 25.187 hybrid contribution 0.124 -0.139 0.010 0.187 sum -17.736 17.620 0.112 25.001 Atomic orbital electron populations 1.20515 0.84857 1.04403 1.03975 1.20875 1.00438 0.85759 1.03939 1.27123 0.97421 1.05994 1.08225 1.83556 1.04989 0.98599 1.61425 1.27024 0.93841 0.97689 1.13770 1.17119 0.82147 0.86763 0.76840 1.90816 1.80043 1.21972 1.50566 1.45720 1.04080 1.11509 1.73941 1.21430 0.87552 0.88757 1.01649 1.21635 0.90768 0.99077 1.02619 1.18941 0.93445 0.93808 0.95254 1.21664 0.92113 0.93669 1.50454 0.91319 1.26018 1.04146 0.95121 0.94827 1.70106 1.32063 1.03750 1.51698 0.85478 0.78300 0.77840 0.79295 1.18974 1.21357 1.18984 1.66471 1.04407 1.33080 1.11549 0.89683 0.87607 0.91665 0.75706 0.74924 0.92293 0.92300 0.90906 0.90903 0.98806 0.98807 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.28 71.24 0.73 -0.27 16 2 C 0.03 0.53 6.68 41.81 0.28 0.81 16 3 C -0.25 -3.15 10.82 66.90 0.72 -2.43 16 4 S 0.26 3.93 22.31 -56.49 -1.26 2.67 16 5 C -0.05 -1.34 7.46 87.26 0.65 -0.69 16 6 C 0.59 19.49 7.81 86.61 0.68 20.16 16 7 O -0.56 -23.74 17.07 -4.09 -0.07 -23.81 16 8 N -0.70 -20.02 5.55 -466.53 -2.59 -22.62 16 9 C 0.13 4.50 5.67 86.38 0.49 4.99 16 10 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.02 1.18 4.97 29.85 0.15 1.33 16 12 C -0.54 -29.64 9.11 25.60 0.23 -29.40 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 15 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 16 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 20 N -0.44 -12.47 10.57 -178.24 -1.88 -14.36 16 21 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.11 0.66 8.11 -2.39 -0.02 0.64 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.23 0.87 8.06 -2.91 -0.02 0.85 16 25 H 0.41 8.86 7.62 -92.71 -0.71 8.15 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -75.22 298.15 1.49 -73.73 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.42 Total: 4.60 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.56 Total: -8.89 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -4.19 Total: -93.57 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.07 Total: -23.81 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.26 Total: 2.67 kcal Total: -75.22 1.49 -73.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339974029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.770 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds