Wall clock time and date at job start Sun Mar 29 2020 23:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46941 * 273.62265 * 3 2 1 5 5 C 1.36879 * 120.00376 * 286.51565 * 4 3 2 6 6 H 1.07996 * 119.99672 * 166.67243 * 5 4 3 7 7 C 1.39043 * 119.99801 * 346.67174 * 5 4 3 8 8 N 1.31361 * 120.00027 * 35.55584 * 7 5 4 9 9 Si 1.86797 * 119.99958 * 215.55540 * 7 5 4 10 10 H 1.48498 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47299 * 120.00243 * 9 7 5 12 12 H 1.48506 * 109.47193 * 240.00380 * 9 7 5 13 13 C 1.34781 * 119.99656 * 106.52126 * 4 3 2 14 14 O 1.21583 * 119.99643 * 186.34729 * 13 4 3 15 15 C 1.47738 * 119.99765 * 6.33560 * 13 4 3 16 16 C 1.39710 * 120.50466 * 322.58527 * 15 13 4 17 17 N 1.31690 * 120.87061 * 179.97438 * 16 15 13 18 18 C 1.31791 * 122.04526 * 359.97438 * 17 16 15 19 19 C 1.39616 * 120.89622 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.48463 * 180.02562 * 19 18 17 21 21 C 8.41276 * 136.52781 * 357.30165 * 2 1 3 22 22 C 1.39698 * 119.03229 * 0.02562 * 19 18 17 23 23 H 4.40637 * 5.51442 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.46914 * 153.63160 * 3 2 1 25 25 H 1.08998 * 109.47563 * 33.62862 * 3 2 1 26 26 H 0.97009 * 120.00263 * 179.97438 * 8 7 5 27 27 H 1.07997 * 119.56585 * 359.97438 * 16 15 13 28 28 H 1.07998 * 119.55432 * 180.02562 * 18 17 16 29 29 H 9.45632 * 137.25045 * 357.02511 * 2 1 3 30 30 H 1.07997 * 120.92157 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0864 1.3785 5 6 3.0443 0.9999 2.2064 6 1 3.1988 0.8832 3.2689 7 6 2.7539 2.2534 1.6795 8 7 1.9292 2.3636 0.6630 9 14 3.5365 3.7807 2.4171 10 1 4.4207 3.3889 3.5440 11 1 4.3380 4.4770 1.3787 12 1 2.4735 4.6906 2.9146 13 6 3.6724 -1.2362 1.8314 14 8 3.9714 -1.3466 3.0047 15 6 3.8985 -2.3623 0.9022 16 6 2.9814 -2.6372 -0.1153 17 7 3.1760 -3.6388 -0.9478 18 6 4.2326 -4.4221 -0.8646 19 6 5.2000 -4.2186 0.1212 20 6 6.3451 -5.0747 0.2032 21 6 7.2792 -5.7816 0.2725 22 6 5.0348 -3.1675 1.0265 23 1 -1.0500 0.0002 0.0000 24 1 3.0089 0.9216 -0.4564 25 1 3.0098 -0.8548 -0.5691 26 1 1.7263 3.2382 0.2955 27 1 2.1012 -2.0203 -0.2204 28 1 4.3522 -5.2319 -1.5691 29 1 8.1180 -6.4103 0.3331 30 1 5.7640 -2.9827 1.8014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530063367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:36 Heat of formation + Delta-G solvation = 150.055283 kcal Electronic energy + Delta-G solvation = -17499.976386 eV Core-core repulsion = 14651.367125 eV Total energy + Delta-G solvation = -2848.609261 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.080 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32082 -38.26890 -35.46146 -34.23811 -32.54875 -31.73713 -31.42216 -30.34121 -26.73963 -25.47553 -23.87083 -23.37353 -20.28118 -18.50301 -18.15169 -17.02597 -16.80433 -16.41983 -15.83088 -14.97078 -14.54561 -14.31865 -14.04995 -13.69261 -13.11026 -12.95926 -12.68343 -12.36905 -11.90636 -11.69167 -11.41109 -11.05364 -10.74375 -10.65654 -10.37429 -9.65613 -9.47195 -9.41893 -9.31188 -8.82961 -8.62591 -8.38741 -8.23560 -6.66578 -3.90148 0.79837 1.28195 2.68391 2.94901 3.07936 3.18382 3.26300 3.58211 3.75344 3.89994 4.03999 4.17703 4.26017 4.59522 4.68937 4.89596 5.01206 5.17174 5.33826 5.48080 5.55659 5.73120 5.97193 6.06656 6.25486 6.36100 6.67473 6.76523 6.91982 7.33390 7.46068 7.85934 8.05964 8.22850 8.73930 8.93305 9.13303 9.71845 10.32415 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.006423 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.753517 B = 4358.540850 C = 5069.311317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.117 4.117 3 C 0.199 3.801 4 N -0.417 5.417 5 C -0.324 4.324 6 H 0.114 0.886 7 C 0.048 3.952 8 N -0.827 5.827 9 Si 0.909 3.091 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.469 3.531 14 O -0.581 6.581 15 C -0.140 4.140 16 C 0.108 3.892 17 N -0.482 5.482 18 C 0.118 3.882 19 C -0.054 4.054 20 C -0.135 4.135 21 C -0.182 4.182 22 C -0.015 4.015 23 H 0.202 0.798 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.273 0.727 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.225 0.775 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -7.911 -5.557 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.118 4.118 3 C 0.077 3.923 4 N -0.132 5.132 5 C -0.450 4.450 6 H 0.132 0.868 7 C -0.161 4.161 8 N -0.461 5.461 9 Si 0.734 3.266 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.259 3.741 14 O -0.467 6.467 15 C -0.145 4.145 16 C -0.048 4.048 17 N -0.189 5.189 18 C -0.040 4.040 19 C -0.056 4.056 20 C -0.136 4.136 21 C -0.198 4.198 22 C -0.042 4.042 23 H 0.219 0.781 24 H 0.126 0.874 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.193 0.807 28 H 0.175 0.825 29 H 0.241 0.759 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.597 -7.892 -5.754 10.408 hybrid contribution 0.687 1.030 0.867 1.512 sum 4.284 -6.862 -4.887 9.451 Atomic orbital electron populations 1.24301 0.95353 1.05293 1.01277 1.22692 0.93893 0.96222 0.99009 1.19165 0.85013 1.02967 0.85177 1.43736 1.48489 1.10670 1.10300 1.19670 1.48629 0.83623 0.93055 0.86845 1.25356 0.94674 0.99555 0.96494 1.70276 1.24921 1.25734 1.25149 0.86170 0.79967 0.80752 0.79720 1.18722 1.20221 1.20692 1.17382 0.86657 0.82494 0.87606 1.90631 1.58175 1.81348 1.16559 1.21248 0.96378 0.98838 0.98076 1.23770 0.98936 0.92829 0.89311 1.67711 1.20650 1.04605 1.25976 1.22909 0.88614 0.97213 0.95287 1.16831 0.93513 0.96098 0.99178 1.19743 0.95145 0.97551 1.01129 1.24785 0.97128 0.98319 0.99610 1.21674 0.95812 0.90798 0.95867 0.78098 0.87392 0.89878 0.91581 0.80664 0.82519 0.75874 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.91 19.25 29.55 0.57 -4.34 16 2 C -0.12 -2.55 9.67 -37.12 -0.36 -2.91 16 3 C 0.20 4.33 4.80 -6.83 -0.03 4.30 16 4 N -0.42 -10.30 2.66 -119.05 -0.32 -10.62 16 5 C -0.32 -8.62 9.14 -15.00 -0.14 -8.76 16 6 H 0.11 3.22 7.41 -52.49 -0.39 2.83 16 7 C 0.05 1.18 5.02 -17.45 -0.09 1.10 16 8 N -0.83 -20.25 9.04 55.50 0.50 -19.75 16 9 Si 0.91 19.42 29.67 -169.99 -5.04 14.38 16 10 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.47 11.42 7.33 -12.38 -0.09 11.33 16 14 O -0.58 -16.03 16.53 5.29 0.09 -15.94 16 15 C -0.14 -2.81 5.43 -104.87 -0.57 -3.37 16 16 C 0.11 2.00 8.55 -17.06 -0.15 1.85 16 17 N -0.48 -8.14 10.33 -12.57 -0.13 -8.27 16 18 C 0.12 1.75 10.90 -17.06 -0.19 1.56 16 19 C -0.05 -0.84 5.73 -106.91 -0.61 -1.45 16 20 C -0.13 -1.84 13.27 -38.84 -0.52 -2.36 16 21 C -0.18 -1.95 19.25 29.55 0.57 -1.39 16 22 C -0.02 -0.27 9.50 -38.44 -0.37 -0.63 16 23 H 0.20 3.27 7.80 -54.09 -0.42 2.85 16 24 H 0.11 2.45 6.43 -51.93 -0.33 2.11 16 25 H 0.08 1.60 3.87 -51.93 -0.20 1.40 16 26 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 27 H 0.18 3.29 4.37 -52.49 -0.23 3.06 16 28 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.22 1.41 7.80 -54.09 -0.42 0.99 16 30 H 0.14 2.52 8.06 -52.49 -0.42 2.09 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -30.07 279.51 -4.63 -34.70 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -1.98 Total: 6.37 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.96 Total: -5.07 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.06 Total: -38.64 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.04 Total: 14.38 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.07 -4.63 -34.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530063367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.752 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds