Wall clock time and date at job start Sun Mar 29 2020 23:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46941 * 273.62265 * 3 2 1 5 5 C 1.36879 * 120.00376 * 286.51565 * 4 3 2 6 6 H 1.07996 * 119.99672 * 166.67243 * 5 4 3 7 7 C 1.39043 * 119.99801 * 346.67174 * 5 4 3 8 8 N 1.31361 * 120.00027 * 35.55584 * 7 5 4 9 9 Si 1.86797 * 119.99958 * 215.55540 * 7 5 4 10 10 H 1.48498 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47299 * 120.00243 * 9 7 5 12 12 H 1.48506 * 109.47193 * 240.00380 * 9 7 5 13 13 C 1.34781 * 119.99656 * 106.52126 * 4 3 2 14 14 O 1.21583 * 119.99643 * 186.34729 * 13 4 3 15 15 C 1.47738 * 119.99765 * 6.33560 * 13 4 3 16 16 C 1.39710 * 120.50466 * 322.58527 * 15 13 4 17 17 N 1.31690 * 120.87061 * 179.97438 * 16 15 13 18 18 C 1.31791 * 122.04526 * 359.97438 * 17 16 15 19 19 C 1.39616 * 120.89622 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.48463 * 180.02562 * 19 18 17 21 21 C 8.41276 * 136.52781 * 357.30165 * 2 1 3 22 22 C 1.39698 * 119.03229 * 0.02562 * 19 18 17 23 23 H 4.40637 * 5.51442 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.46914 * 153.63160 * 3 2 1 25 25 H 1.08998 * 109.47563 * 33.62862 * 3 2 1 26 26 H 0.97009 * 120.00263 * 179.97438 * 8 7 5 27 27 H 1.07997 * 119.56585 * 359.97438 * 16 15 13 28 28 H 1.07998 * 119.55432 * 180.02562 * 18 17 16 29 29 H 9.45632 * 137.25045 * 357.02511 * 2 1 3 30 30 H 1.07997 * 120.92157 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0864 1.3785 5 6 3.0443 0.9999 2.2064 6 1 3.1988 0.8832 3.2689 7 6 2.7539 2.2534 1.6795 8 7 1.9292 2.3636 0.6630 9 14 3.5365 3.7807 2.4171 10 1 4.4207 3.3889 3.5440 11 1 4.3380 4.4770 1.3787 12 1 2.4735 4.6906 2.9146 13 6 3.6724 -1.2362 1.8314 14 8 3.9714 -1.3466 3.0047 15 6 3.8985 -2.3623 0.9022 16 6 2.9814 -2.6372 -0.1153 17 7 3.1760 -3.6388 -0.9478 18 6 4.2326 -4.4221 -0.8646 19 6 5.2000 -4.2186 0.1212 20 6 6.3451 -5.0747 0.2032 21 6 7.2792 -5.7816 0.2725 22 6 5.0348 -3.1675 1.0265 23 1 -1.0500 0.0002 0.0000 24 1 3.0089 0.9216 -0.4564 25 1 3.0098 -0.8548 -0.5691 26 1 1.7263 3.2382 0.2955 27 1 2.1012 -2.0203 -0.2204 28 1 4.3522 -5.2319 -1.5691 29 1 8.1180 -6.4103 0.3331 30 1 5.7640 -2.9827 1.8014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530063367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:36 Heat of formation + Delta-G solvation = 131.774394 kcal Electronic energy + Delta-G solvation = -17500.769105 eV Core-core repulsion = 14651.367125 eV Total energy + Delta-G solvation = -2849.401980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81515 -39.95948 -37.33779 -35.39223 -34.30626 -33.27982 -33.08846 -31.59450 -28.47175 -27.23130 -25.22601 -24.89603 -21.83792 -19.94873 -19.82836 -18.53299 -18.33838 -17.96442 -17.22159 -16.74410 -16.18153 -15.91332 -15.60399 -15.15622 -14.72453 -14.51122 -14.19937 -14.08631 -13.73456 -13.16211 -12.82755 -12.56759 -12.45285 -12.15029 -11.76338 -11.32826 -11.13067 -10.98202 -10.81070 -10.59729 -10.31065 -10.14450 -9.74084 -8.55295 -5.90136 -0.49874 -0.11237 1.29816 1.41202 1.53569 1.71770 1.72866 1.98710 2.10218 2.29286 2.30971 2.75823 2.86442 3.05802 3.25518 3.40621 3.71414 3.74103 3.79228 3.88592 4.22558 4.38928 4.49792 4.84691 4.90824 4.92197 5.08227 5.34759 5.38892 5.47039 5.91379 6.31044 6.53240 6.72345 6.99988 7.09722 7.24319 7.82990 8.42945 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.006423 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.753517 B = 4358.540850 C = 5069.311317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.159 4.159 3 C 0.205 3.795 4 N -0.425 5.425 5 C -0.371 4.371 6 H 0.080 0.920 7 C 0.026 3.974 8 N -0.833 5.833 9 Si 0.973 3.027 10 H -0.277 1.277 11 H -0.263 1.263 12 H -0.272 1.272 13 C 0.461 3.539 14 O -0.629 6.629 15 C -0.159 4.159 16 C 0.108 3.892 17 N -0.484 5.484 18 C 0.131 3.869 19 C -0.037 4.037 20 C -0.206 4.206 21 C -0.116 4.116 22 C -0.025 4.025 23 H 0.238 0.762 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.281 0.719 27 H 0.170 0.830 28 H 0.200 0.800 29 H 0.270 0.730 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 -9.442 -7.344 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.160 4.160 3 C 0.084 3.916 4 N -0.139 5.139 5 C -0.497 4.497 6 H 0.098 0.902 7 C -0.182 4.182 8 N -0.466 5.466 9 Si 0.795 3.205 10 H -0.202 1.202 11 H -0.187 1.187 12 H -0.197 1.197 13 C 0.252 3.748 14 O -0.518 6.518 15 C -0.165 4.165 16 C -0.048 4.048 17 N -0.191 5.191 18 C -0.027 4.027 19 C -0.039 4.039 20 C -0.206 4.206 21 C -0.132 4.132 22 C -0.051 4.051 23 H 0.254 0.746 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.216 0.784 29 H 0.286 0.714 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.454 -9.416 -7.587 12.886 hybrid contribution 0.506 1.278 1.363 1.935 sum 4.960 -8.138 -6.224 11.383 Atomic orbital electron populations 1.25198 0.96316 1.03543 0.99406 1.22952 0.94502 0.97864 1.00708 1.19143 0.85506 1.03214 0.83750 1.43853 1.48590 1.10353 1.11148 1.19457 1.52363 0.85541 0.92320 0.90234 1.25954 0.94104 1.01119 0.97060 1.70312 1.24242 1.26688 1.25325 0.85251 0.78951 0.77458 0.78813 1.20232 1.18724 1.19731 1.18053 0.85665 0.83330 0.87747 1.90566 1.59935 1.82538 1.18787 1.20900 0.98387 0.98551 0.98650 1.23542 0.98448 0.93600 0.89258 1.67790 1.21603 1.04369 1.25366 1.23608 0.87108 0.96929 0.95072 1.16915 0.94314 0.94898 0.97736 1.19743 0.96518 0.99746 1.04626 1.25852 0.95893 0.95949 0.95550 1.21731 0.95182 0.91543 0.96644 0.74575 0.88782 0.87697 0.90846 0.81287 0.78365 0.71428 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.97 19.25 74.32 1.43 -7.54 16 2 C -0.16 -7.06 9.67 31.12 0.30 -6.76 16 3 C 0.21 9.28 4.80 84.57 0.41 9.68 16 4 N -0.42 -22.22 2.66 -648.83 -1.73 -23.95 16 5 C -0.37 -20.91 9.14 84.10 0.77 -20.15 16 6 H 0.08 4.91 7.41 -2.91 -0.02 4.88 16 7 C 0.03 1.34 5.02 84.96 0.43 1.76 16 8 N -0.83 -41.16 9.04 21.68 0.20 -40.97 16 9 Si 0.97 40.71 29.67 68.60 2.04 42.74 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 C 0.46 23.92 7.33 86.75 0.64 24.56 16 14 O -0.63 -37.26 16.53 -3.98 -0.07 -37.32 16 15 C -0.16 -6.65 5.43 -20.03 -0.11 -6.76 16 16 C 0.11 4.02 8.55 85.07 0.73 4.75 16 17 N -0.48 -15.68 10.33 -193.69 -2.00 -17.68 16 18 C 0.13 3.55 10.90 85.03 0.93 4.48 16 19 C -0.04 -1.08 5.73 -21.35 -0.12 -1.21 16 20 C -0.21 -5.01 13.27 30.02 0.40 -4.61 16 21 C -0.12 -1.94 19.25 74.32 1.43 -0.51 16 22 C -0.02 -0.89 9.50 23.01 0.22 -0.68 16 23 H 0.24 7.16 7.80 -4.42 -0.03 7.12 16 24 H 0.09 4.42 6.43 -2.39 -0.02 4.41 16 25 H 0.11 4.19 3.87 -2.39 -0.01 4.18 16 26 H 0.28 12.84 8.31 -92.70 -0.77 12.07 16 27 H 0.17 6.50 4.37 -2.91 -0.01 6.49 16 28 H 0.20 3.69 8.06 -2.91 -0.02 3.66 16 29 H 0.27 1.60 7.80 -4.42 -0.03 1.57 16 30 H 0.14 5.06 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -69.15 279.51 7.05 -62.09 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.18 Total: 18.05 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 7.44 Total: -2.97 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -3.53 Total: -82.60 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.07 Total: -37.32 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.04 Total: 42.74 kcal Total: -69.15 7.05 -62.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530063367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.866 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds