Wall clock time and date at job start Sun Mar 29 2020 23:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 119.99982 * 2 1 4 4 H 1.48504 * 109.46919 * 239.99761 * 3 2 1 5 5 H 1.48496 * 109.47105 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46877 * 120.00057 * 3 2 1 7 7 C 1.38957 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99888 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99935 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00030 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00262 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47550 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 N 1.46491 * 109.46957 * 179.72354 * 16 14 13 18 18 C 1.34595 * 126.44002 * 125.00057 * 17 16 14 19 19 N 1.31073 * 106.68189 * 179.97438 * 18 17 16 20 20 N 1.28841 * 107.99106 * 359.97438 * 19 18 17 21 21 N 1.28739 * 109.39430 * 359.73676 * 20 19 18 22 22 H 0.97003 * 120.00258 * 0.02562 * 1 2 3 23 23 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 24 24 H 1.08998 * 109.47333 * 59.99721 * 12 10 9 25 25 H 1.09002 * 109.47271 * 300.00155 * 12 10 9 26 26 H 0.97000 * 119.99484 * 359.97438 * 13 12 10 27 27 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 28 28 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 29 29 H 1.08003 * 126.66266 * 359.95789 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1957 -5.9765 0.0007 14 6 1.7465 -7.2472 -0.0002 15 8 0.5540 -7.4688 -0.0011 16 6 2.7258 -8.3926 0.0068 17 7 1.9933 -9.6612 0.0110 18 6 2.1331 -10.6681 -0.8712 19 7 1.2959 -11.6079 -0.5054 20 7 0.6746 -11.1998 0.5470 21 7 1.0978 -10.0263 0.8652 22 1 -0.4851 0.8400 -0.0004 23 1 0.3534 -2.3906 0.0005 24 1 0.6174 -4.9205 -0.8902 25 1 0.6167 -4.9209 0.8897 26 1 3.1494 -5.7992 0.0011 27 1 3.3542 -8.3388 -0.8822 28 1 3.3507 -8.3309 0.8977 29 1 2.8046 -10.6961 -1.7166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544135418.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:44 Heat of formation + Delta-G solvation = 23.776596 kcal Electronic energy + Delta-G solvation = -17626.068480 eV Core-core repulsion = 14393.426852 eV Total energy + Delta-G solvation = -3232.641628 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.14629 -41.12409 -39.95661 -36.53770 -36.22579 -35.40563 -33.45360 -33.37608 -30.94975 -28.72789 -26.42317 -24.82559 -24.31639 -21.79321 -21.41662 -20.11768 -19.14450 -18.72655 -17.80222 -17.21759 -16.97958 -16.93981 -16.57961 -16.25291 -15.82641 -15.59950 -14.88970 -14.47210 -13.97916 -13.79184 -13.54056 -13.40877 -13.11838 -12.89159 -12.46972 -12.20172 -12.14535 -12.12038 -11.55553 -11.48875 -11.08794 -10.56771 -10.31859 -10.09860 -8.51307 -6.01735 0.28750 0.96496 1.27665 1.35173 1.39181 1.43917 1.54472 1.90604 1.93538 2.30186 3.08553 3.16233 3.28669 3.51115 3.60230 4.02874 4.05793 4.18529 4.39198 4.41458 4.42556 4.73571 5.13037 5.22063 5.37992 5.90811 6.34385 6.47233 7.00201 7.03129 7.43921 7.59891 7.92660 8.65089 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.078525 B = 0.003374 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.490725 B = 8295.640225 C = 8539.022971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.090 0.910 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.620 6.620 12 C 0.122 3.878 13 N -0.693 5.693 14 C 0.499 3.501 15 O -0.571 6.571 16 C 0.101 3.899 17 N -0.299 5.299 18 C 0.186 3.814 19 N -0.347 5.347 20 N -0.119 5.119 21 N -0.099 5.099 22 H 0.279 0.721 23 H 0.398 0.602 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.423 0.577 27 H 0.207 0.793 28 H 0.170 0.830 29 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.572 -13.078 -3.274 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.108 0.892 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.508 6.508 12 C -0.006 4.006 13 N -0.348 5.348 14 C 0.284 3.716 15 O -0.450 6.450 16 C -0.022 4.022 17 N -0.101 5.101 18 C -0.111 4.111 19 N -0.195 5.195 20 N -0.113 5.113 21 N -0.086 5.086 22 H 0.089 0.911 23 H 0.232 0.768 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.263 0.737 27 H 0.224 0.776 28 H 0.187 0.813 29 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 7.373 -13.619 -2.445 15.678 hybrid contribution 0.473 1.634 -0.394 1.746 sum 7.846 -11.985 -2.840 14.603 Atomic orbital electron populations 1.69673 1.07086 1.29690 1.49254 1.26142 0.96497 1.02796 0.95804 0.84922 0.77683 0.76216 0.79157 1.19338 1.19968 1.19451 1.19716 0.93047 0.83460 1.50392 0.89228 1.41875 1.09625 1.04780 1.63369 1.20358 0.88148 0.85776 0.83614 1.90475 1.14843 1.87494 1.58021 1.20748 0.91693 0.83925 1.04215 1.45454 1.11843 1.03786 1.73766 1.20906 0.89714 0.84461 0.76507 1.90846 1.18513 1.84900 1.50700 1.22456 0.91822 0.74620 1.13322 1.48400 1.26696 1.16431 1.18606 1.28829 1.00826 0.82887 0.98599 1.74875 1.08987 1.26721 1.08881 1.78637 1.20052 1.03294 1.09308 1.78954 1.03859 1.09590 1.16203 0.91131 0.76826 0.88764 0.89141 0.73745 0.77606 0.81294 0.68762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.48 13.05 21.66 0.28 -47.20 15 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 15 3 Si 1.00 40.16 29.55 68.60 2.03 42.18 15 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 15 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 7 C -0.34 -17.65 9.68 84.04 0.81 -16.84 15 8 H 0.09 4.89 7.16 -2.91 -0.02 4.87 15 9 N -0.56 -26.51 5.29 -306.98 -1.62 -28.14 15 10 C 0.43 18.02 7.85 87.66 0.69 18.71 15 11 O -0.62 -28.48 15.24 -3.08 -0.05 -28.53 15 12 C 0.12 3.84 6.15 85.63 0.53 4.37 15 13 N -0.69 -16.53 5.53 -466.79 -2.58 -19.11 15 14 C 0.50 10.99 7.85 87.66 0.69 11.68 15 15 O -0.57 -18.94 15.71 -3.04 -0.05 -18.99 15 16 C 0.10 0.94 6.96 85.64 0.60 1.53 15 17 N -0.30 -5.31 3.19 -355.58 -1.13 -6.45 15 18 C 0.19 2.56 12.79 180.27 2.31 4.86 15 19 N -0.35 -8.63 12.36 -60.29 -0.74 -9.38 15 20 N -0.12 -3.70 13.43 37.01 0.50 -3.20 15 21 N -0.10 -2.84 12.31 37.02 0.46 -2.39 15 22 H 0.28 13.63 8.31 -92.71 -0.77 12.86 15 23 H 0.40 18.29 7.90 -92.71 -0.73 17.56 15 24 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 25 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 26 H 0.42 8.82 7.44 -92.71 -0.69 8.14 15 27 H 0.21 -0.60 8.08 -2.38 -0.02 -0.62 15 28 H 0.17 0.63 8.14 -2.39 -0.02 0.61 15 29 H 0.30 -0.37 8.06 -2.91 -0.02 -0.39 15 Total: -1.00 -81.04 275.12 2.98 -78.06 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -0.19 Total: 18.93 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 6.09 Total: 24.19 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.85 Total: -115.86 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.09 Total: -47.51 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Total: -81.04 2.98 -78.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544135418.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.841 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds