Wall clock time and date at job start Sun Mar 29 2020 23:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34647 * 116.99980 * 180.02562 * 3 2 1 5 5 O 1.21413 * 120.00122 * 359.71920 * 4 3 2 6 6 C 1.48236 * 119.99890 * 180.02562 * 4 3 2 7 7 C 1.42068 * 126.83414 * 179.43327 * 6 4 3 8 8 C 1.36861 * 103.78152 * 179.90968 * 7 6 4 9 9 C 1.47291 * 126.84053 * 180.02562 * 8 7 6 10 10 O 1.21650 * 120.00151 * 0.30467 * 9 8 7 11 11 N 1.34772 * 119.99758 * 180.29889 * 9 8 7 12 12 C 1.36670 * 120.00164 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99693 * 0.02562 * 12 11 9 14 14 C 1.39168 * 120.00126 * 180.02562 * 12 11 9 15 15 N 1.31282 * 120.00178 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46903 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47544 * 119.99870 * 16 14 12 19 19 H 1.48501 * 109.47259 * 239.99689 * 16 14 12 20 20 O 1.34644 * 106.31636 * 0.34710 * 8 7 6 21 21 N 1.20870 * 111.73961 * 359.76040 * 20 8 7 22 22 H 1.08997 * 109.47883 * 59.99233 * 1 2 3 23 23 H 1.09003 * 109.47482 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 25 25 H 1.09004 * 109.46536 * 240.00579 * 2 1 3 26 26 H 1.08997 * 109.47571 * 119.99860 * 2 1 3 27 27 H 1.07997 * 128.11133 * 0.03178 * 7 6 4 28 28 H 0.97006 * 120.00142 * 0.02562 * 11 9 8 29 29 H 0.97007 * 119.99883 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 -0.0005 5 8 4.0885 0.5825 0.0042 6 6 3.9154 2.9152 0.0000 7 6 5.2916 3.2676 0.0108 8 6 5.2778 4.6362 0.0042 9 6 6.4475 5.5312 0.0101 10 8 7.5708 5.0642 0.0163 11 7 6.2734 6.8677 0.0083 12 6 7.3587 7.6983 0.0143 13 1 8.3559 7.2836 0.0199 14 6 7.1788 9.0783 0.0131 15 7 5.9666 9.5823 0.0057 16 14 8.6623 10.2135 0.0205 17 1 9.9062 9.4024 0.0277 18 1 8.6363 11.0700 -1.1924 19 1 8.6236 11.0706 1.2325 20 8 3.9818 5.0013 -0.0014 21 7 3.2464 4.0420 -0.0037 22 1 -0.3635 0.5139 -0.8898 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 6.1481 2.6098 0.0198 28 1 5.3776 7.2401 0.0036 29 1 5.8413 10.5442 0.0052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:49 Heat of formation + Delta-G solvation = -62.150535 kcal Electronic energy + Delta-G solvation = -17715.983714 eV Core-core repulsion = 14415.030504 eV Total energy + Delta-G solvation = -3300.953210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.77053 -40.42586 -38.29201 -36.81880 -34.51474 -33.79713 -32.03308 -31.82409 -31.20030 -25.79126 -25.70191 -23.21531 -22.99279 -21.77762 -20.10133 -18.56123 -17.64403 -17.62995 -17.48047 -16.62577 -16.24667 -15.32367 -14.81989 -14.31499 -14.22261 -13.76961 -13.59774 -13.32249 -13.14965 -12.93328 -12.23725 -11.89695 -11.86113 -11.53656 -11.33049 -10.94779 -10.77145 -10.60644 -10.48207 -10.43493 -9.92250 -9.31279 -9.00578 -8.37639 -6.81764 -4.12468 0.95744 1.45588 2.24121 2.86872 3.03510 3.09286 3.14568 3.20938 3.90251 3.90655 3.97539 4.46487 4.66931 4.70186 4.96592 4.99511 5.01256 5.12557 5.44478 5.49802 5.50849 5.70459 5.95738 6.13162 6.15815 7.18790 7.46393 7.64206 8.06816 8.25160 8.77068 9.09815 9.62359 10.32853 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.060520 B = 0.003905 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.548807 B = 7168.229748 C = 7610.322374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.343 6.343 4 C 0.560 3.440 5 O -0.489 6.489 6 C -0.025 4.025 7 C -0.148 4.148 8 C -0.025 4.025 9 C 0.484 3.516 10 O -0.574 6.574 11 N -0.513 5.513 12 C -0.295 4.295 13 H 0.116 0.884 14 C 0.029 3.971 15 N -0.867 5.867 16 Si 0.941 3.059 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.276 1.276 20 O 0.135 5.865 21 N -0.312 5.312 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.187 0.813 28 H 0.401 0.599 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -10.522 -0.018 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.259 6.259 4 C 0.401 3.599 5 O -0.375 6.375 6 C -0.180 4.180 7 C -0.173 4.173 8 C -0.090 4.090 9 C 0.270 3.730 10 O -0.460 6.460 11 N -0.145 5.145 12 C -0.426 4.426 13 H 0.134 0.866 14 C -0.177 4.177 15 N -0.505 5.505 16 Si 0.766 3.234 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.202 1.202 20 O 0.053 5.947 21 N -0.012 5.012 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.205 0.795 28 H 0.236 0.764 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.327 -10.744 -0.019 14.228 hybrid contribution 0.712 0.250 0.002 0.754 sum -8.616 -10.494 -0.017 13.578 Atomic orbital electron populations 1.21812 0.92283 1.03003 1.03857 1.23137 0.95631 0.79542 1.02923 1.86620 1.22839 1.32713 1.83706 1.19458 0.80841 0.86813 0.72745 1.90857 1.60608 1.40719 1.45294 1.22104 0.92247 0.91689 1.11949 1.22493 0.95562 0.93837 1.05450 1.25093 0.84723 0.95559 1.03671 1.15949 0.84829 0.81952 0.90283 1.90721 1.21158 1.74701 1.59464 1.41901 1.10789 1.03880 1.57929 1.20023 0.88812 0.86919 1.46799 0.86588 1.25569 0.98620 0.97773 0.95774 1.69579 1.21292 1.14661 1.44986 0.85617 0.80357 0.79241 0.78166 1.18609 1.20191 1.20197 1.84976 1.14885 1.29489 1.65303 1.74177 1.18266 0.94622 1.14103 0.91284 0.90037 0.91292 0.90862 0.90856 0.79545 0.76412 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.73 15 2 C 0.06 0.62 6.19 37.16 0.23 0.85 15 3 O -0.34 -4.85 10.23 -40.35 -0.41 -5.27 15 4 C 0.56 9.05 7.99 34.84 0.28 9.33 15 5 O -0.49 -8.40 16.73 -19.20 -0.32 -8.72 15 6 C -0.02 -0.44 7.22 -82.62 -0.60 -1.04 15 7 C -0.15 -2.72 10.77 -38.61 -0.42 -3.13 15 8 C -0.02 -0.50 7.28 -36.40 -0.26 -0.76 15 9 C 0.48 11.34 7.76 -12.58 -0.10 11.25 15 10 O -0.57 -15.08 16.48 5.23 0.09 -14.99 15 11 N -0.51 -12.37 5.27 -12.01 -0.06 -12.44 15 12 C -0.30 -7.56 9.68 -15.05 -0.15 -7.70 15 13 H 0.12 3.06 7.15 -52.49 -0.38 2.69 15 14 C 0.03 0.72 5.50 -17.44 -0.10 0.62 15 15 N -0.87 -21.52 13.04 55.51 0.72 -20.79 15 16 Si 0.94 18.95 29.55 -169.99 -5.02 13.93 15 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 18 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 19 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 20 O 0.13 2.52 11.01 15.55 0.17 2.69 15 21 N -0.31 -5.68 12.09 33.36 0.40 -5.28 15 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 15 24 H 0.07 0.51 8.14 -51.92 -0.42 0.09 15 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.07 0.69 8.13 -51.93 -0.42 0.27 15 27 H 0.19 3.20 8.06 -52.49 -0.42 2.78 15 28 H 0.40 9.28 7.71 -40.82 -0.31 8.97 15 29 H 0.28 6.50 8.31 -40.82 -0.34 6.16 15 LS Contribution 280.34 15.07 4.22 4.22 Total: -1.00 -28.42 280.34 -3.30 -31.72 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -2.36 Total: 6.24 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.73 Total: 8.68 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 1.06 Total: -38.51 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.48 Total: -26.29 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.42 -3.30 -31.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.429 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds