Wall clock time and date at job start Sun Mar 29 2020 23:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34647 * 116.99980 * 180.02562 * 3 2 1 5 5 O 1.21413 * 120.00122 * 359.71920 * 4 3 2 6 6 C 1.48236 * 119.99890 * 180.02562 * 4 3 2 7 7 C 1.42068 * 126.83414 * 179.43327 * 6 4 3 8 8 C 1.36861 * 103.78152 * 179.90968 * 7 6 4 9 9 C 1.47291 * 126.84053 * 180.02562 * 8 7 6 10 10 O 1.21650 * 120.00151 * 0.30467 * 9 8 7 11 11 N 1.34772 * 119.99758 * 180.29889 * 9 8 7 12 12 C 1.36670 * 120.00164 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99693 * 0.02562 * 12 11 9 14 14 C 1.39168 * 120.00126 * 180.02562 * 12 11 9 15 15 N 1.31282 * 120.00178 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00028 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46903 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47544 * 119.99870 * 16 14 12 19 19 H 1.48501 * 109.47259 * 239.99689 * 16 14 12 20 20 O 1.34644 * 106.31636 * 0.34710 * 8 7 6 21 21 N 1.20870 * 111.73961 * 359.76040 * 20 8 7 22 22 H 1.08997 * 109.47883 * 59.99233 * 1 2 3 23 23 H 1.09003 * 109.47482 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 25 25 H 1.09004 * 109.46536 * 240.00579 * 2 1 3 26 26 H 1.08997 * 109.47571 * 119.99860 * 2 1 3 27 27 H 1.07997 * 128.11133 * 0.03178 * 7 6 4 28 28 H 0.97006 * 120.00142 * 0.02562 * 11 9 8 29 29 H 0.97007 * 119.99883 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 -0.0005 5 8 4.0885 0.5825 0.0042 6 6 3.9154 2.9152 0.0000 7 6 5.2916 3.2676 0.0108 8 6 5.2778 4.6362 0.0042 9 6 6.4475 5.5312 0.0101 10 8 7.5708 5.0642 0.0163 11 7 6.2734 6.8677 0.0083 12 6 7.3587 7.6983 0.0143 13 1 8.3559 7.2836 0.0199 14 6 7.1788 9.0783 0.0131 15 7 5.9666 9.5823 0.0057 16 14 8.6623 10.2135 0.0205 17 1 9.9062 9.4024 0.0277 18 1 8.6363 11.0700 -1.1924 19 1 8.6236 11.0706 1.2325 20 8 3.9818 5.0013 -0.0014 21 7 3.2464 4.0420 -0.0037 22 1 -0.3635 0.5139 -0.8898 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 6.1481 2.6098 0.0198 28 1 5.3776 7.2401 0.0036 29 1 5.8413 10.5442 0.0052 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:49 Heat of formation + Delta-G solvation = -80.730476 kcal Electronic energy + Delta-G solvation = -17716.789401 eV Core-core repulsion = 14415.030504 eV Total energy + Delta-G solvation = -3301.758897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.29709 -41.62745 -40.19115 -37.98684 -36.36242 -35.32842 -33.72427 -33.06916 -32.52224 -27.63998 -26.98068 -24.77937 -24.04933 -23.18663 -21.53171 -20.42887 -19.34846 -19.12853 -18.73523 -17.71517 -17.57005 -17.10628 -16.53756 -15.93751 -15.52854 -15.23926 -15.09325 -14.74287 -14.69968 -13.71191 -13.64072 -13.11221 -13.07348 -12.99117 -12.60541 -12.53885 -12.21133 -12.06956 -11.92410 -11.70769 -11.64227 -10.95478 -10.93441 -10.25654 -8.65481 -6.08771 -0.52589 -0.05480 1.05840 1.41665 1.44736 1.52043 1.53359 1.63405 2.10461 2.24472 2.59033 2.85622 3.12494 3.49221 3.73638 3.93159 3.96363 3.98721 4.21015 4.29658 4.63625 4.69742 4.88530 4.96955 5.26606 5.28957 5.74212 6.20707 6.30726 6.61942 6.88176 7.22884 7.74520 8.50174 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.060520 B = 0.003905 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.548807 B = 7168.229748 C = 7610.322374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.347 6.347 4 C 0.565 3.435 5 O -0.500 6.500 6 C -0.021 4.021 7 C -0.130 4.130 8 C -0.037 4.037 9 C 0.490 3.510 10 O -0.605 6.605 11 N -0.519 5.519 12 C -0.335 4.335 13 H 0.099 0.901 14 C -0.001 4.001 15 N -0.892 5.892 16 Si 1.006 2.994 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.268 1.268 20 O 0.137 5.863 21 N -0.307 5.307 22 H 0.067 0.933 23 H 0.110 0.890 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.200 0.800 28 H 0.404 0.596 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 -11.298 -0.019 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.407 3.593 5 O -0.387 6.387 6 C -0.176 4.176 7 C -0.154 4.154 8 C -0.102 4.102 9 C 0.277 3.723 10 O -0.494 6.494 11 N -0.151 5.151 12 C -0.464 4.464 13 H 0.117 0.883 14 C -0.206 4.206 15 N -0.530 5.530 16 Si 0.828 3.172 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.193 1.193 20 O 0.055 5.945 21 N -0.006 5.006 22 H 0.086 0.914 23 H 0.128 0.872 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.217 0.783 28 H 0.239 0.761 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.278 -11.518 -0.020 15.437 hybrid contribution 0.823 0.286 0.002 0.871 sum -9.455 -11.232 -0.018 14.682 Atomic orbital electron populations 1.21862 0.90025 1.04816 1.03712 1.23584 0.97356 0.77575 1.03710 1.86618 1.21304 1.35404 1.83003 1.19193 0.81619 0.85830 0.72676 1.90856 1.61109 1.40740 1.45958 1.22326 0.91884 0.92422 1.11000 1.22711 0.96448 0.93204 1.03054 1.24433 0.84548 0.95413 1.05815 1.16209 0.85360 0.81952 0.88827 1.90687 1.22914 1.75423 1.60381 1.41890 1.10650 1.04110 1.58494 1.20025 0.88587 0.87956 1.49832 0.88286 1.26367 1.01317 0.98380 0.94521 1.69625 1.22730 1.15406 1.45222 0.84679 0.76810 0.77139 0.78595 1.18986 1.19265 1.19270 1.84991 1.14277 1.29762 1.65474 1.74175 1.18013 0.94788 1.13606 0.91417 0.87199 0.91430 0.90106 0.90113 0.78322 0.76122 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.29 71.98 0.74 -1.02 15 2 C 0.05 0.90 6.19 71.98 0.45 1.34 15 3 O -0.35 -9.14 10.23 -55.56 -0.57 -9.71 15 4 C 0.56 17.21 7.99 70.48 0.56 17.78 15 5 O -0.50 -16.21 16.73 20.12 0.34 -15.87 15 6 C -0.02 -0.69 7.22 42.87 0.31 -0.38 15 7 C -0.13 -4.60 10.77 22.90 0.25 -4.36 15 8 C -0.04 -1.45 7.28 24.33 0.18 -1.27 15 9 C 0.49 23.33 7.76 86.62 0.67 24.00 15 10 O -0.61 -32.40 16.48 -4.19 -0.07 -32.47 15 11 N -0.52 -25.65 5.27 -310.15 -1.63 -27.29 15 12 C -0.33 -17.53 9.68 84.16 0.81 -16.72 15 13 H 0.10 5.42 7.15 -2.91 -0.02 5.40 15 14 C 0.00 -0.07 5.50 85.00 0.47 0.40 15 15 N -0.89 -44.33 13.04 21.70 0.28 -44.05 15 16 Si 1.01 38.68 29.55 68.60 2.03 40.71 15 17 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 18 H -0.27 -9.87 7.11 99.48 0.71 -9.16 15 19 H -0.27 -9.87 7.11 99.48 0.71 -9.16 15 20 O 0.14 5.03 11.01 65.83 0.72 5.76 15 21 N -0.31 -10.75 12.09 -48.94 -0.59 -11.34 15 22 H 0.07 0.84 8.14 -2.39 -0.02 0.82 15 23 H 0.11 0.72 8.14 -2.39 -0.02 0.70 15 24 H 0.07 0.84 8.14 -2.38 -0.02 0.82 15 25 H 0.08 1.33 8.14 -2.38 -0.02 1.31 15 26 H 0.08 1.34 8.13 -2.39 -0.02 1.32 15 27 H 0.20 6.54 8.06 -2.91 -0.02 6.52 15 28 H 0.40 19.11 7.71 -92.70 -0.71 18.40 15 29 H 0.29 13.20 8.31 -92.70 -0.77 12.43 15 Total: -1.00 -60.09 280.34 5.44 -54.65 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.49 Total: 19.83 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 4.44 Total: 19.78 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.94 Total: -82.68 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: 0.42 Total: -52.29 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -60.09 5.44 -54.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.083 kcal (2) G-P(sol) polarization free energy of solvation -60.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds