Wall clock time and date at job start Sun Mar 29 2020 23:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47319 * 270.00332 * 3 2 1 5 5 H 1.48504 * 109.47023 * 30.00494 * 3 2 1 6 6 H 1.48498 * 109.47281 * 150.00227 * 3 2 1 7 7 C 1.37883 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00506 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99641 * 179.97438 * 7 2 1 10 10 O 1.42903 * 112.93967 * 309.66332 * 9 7 2 11 11 C 1.53939 * 113.74425 * 81.25316 * 9 7 2 12 12 N 1.47935 * 85.99585 * 138.00446 * 11 9 7 13 13 C 1.34770 * 134.50020 * 155.33740 * 12 11 9 14 14 O 1.21560 * 119.99772 * 180.02562 * 13 12 11 15 15 C 1.47846 * 120.00110 * 0.03493 * 13 12 11 16 16 N 1.31556 * 125.60671 * 359.68666 * 15 13 12 17 17 N 1.40428 * 106.83026 * 179.86224 * 16 15 13 18 18 H 0.96994 * 126.74163 * 180.15853 * 17 16 15 19 19 C 1.35145 * 106.51933 * 0.40446 * 17 16 15 20 20 O 1.35427 * 125.91649 * 179.75784 * 19 17 16 21 21 N 1.31048 * 108.16792 * 359.75115 * 19 17 16 22 22 C 1.47583 * 91.00485 * 335.36053 * 12 11 9 23 23 H 0.96997 * 120.00163 * 359.97438 * 1 2 3 24 24 H 0.96700 * 114.00311 * 50.33748 * 10 9 7 25 25 H 1.08997 * 113.77317 * 252.35938 * 11 9 7 26 26 H 1.09004 * 113.76958 * 23.76220 * 11 9 7 27 27 H 0.96697 * 113.99745 * 270.02505 * 20 19 17 28 28 H 1.08996 * 113.76772 * 270.33752 * 22 12 11 29 29 H 1.08991 * 113.86922 * 138.95154 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 8 4.0681 -0.3539 -1.0142 11 6 4.1319 -0.9801 1.3914 12 7 5.0941 -2.0375 1.0110 13 6 6.3468 -2.3563 1.3923 14 8 6.9103 -3.3100 0.8917 15 6 7.0356 -1.5464 2.4197 16 7 6.5343 -0.4928 3.0274 17 7 7.5151 -0.0343 3.9217 18 1 7.4459 0.7274 4.5182 19 6 8.5764 -0.8595 3.7842 20 8 9.7456 -0.7697 4.4617 21 7 8.2782 -1.7618 2.8818 22 6 4.1314 -2.6025 0.0456 23 1 -0.4850 0.8400 0.0004 24 1 3.7022 0.5411 -1.0279 25 1 4.5856 0.0020 1.5241 26 1 3.4734 -1.2606 2.2135 27 1 10.4108 -0.2190 4.0268 28 1 3.4727 -3.3583 0.4733 29 1 4.5829 -2.9153 -0.8958 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558966773.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:26 Heat of formation + Delta-G solvation = 32.227786 kcal Electronic energy + Delta-G solvation = -18678.072304 eV Core-core repulsion = 15413.504396 eV Total energy + Delta-G solvation = -3264.567908 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.37411 -39.70928 -38.06750 -37.48097 -34.50985 -32.84226 -32.56146 -31.12667 -28.86749 -26.04573 -25.40713 -23.87082 -22.56745 -20.23967 -19.74318 -18.65842 -17.75546 -17.49576 -16.74867 -16.43195 -16.13525 -15.37105 -15.09683 -14.32518 -13.74828 -13.62693 -13.51428 -13.10144 -12.74454 -12.36925 -12.20131 -11.82992 -11.23891 -10.95520 -10.63748 -10.51819 -10.46491 -10.14357 -10.03128 -9.87482 -9.38808 -9.05531 -8.72631 -8.13906 -6.43178 -4.49580 0.96563 1.78004 2.06917 2.74380 2.98866 3.03486 3.14064 3.50601 3.68071 4.02730 4.29614 4.55151 4.70377 5.08162 5.53418 5.65955 5.72137 5.95420 6.09451 6.16692 6.28450 6.35155 6.41173 6.59540 7.04151 7.17821 7.58436 8.00883 8.07044 8.42278 8.50325 8.60875 9.14136 10.68844 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.006416 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.634665 B = 4362.745023 C = 4929.342869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.081 3.919 3 Si 0.855 3.145 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.193 3.807 10 O -0.553 6.553 11 C 0.070 3.930 12 N -0.617 5.617 13 C 0.619 3.381 14 O -0.523 6.523 15 C 0.221 3.779 16 N -0.244 5.244 17 N -0.479 5.479 18 H 0.443 0.557 19 C 0.450 3.550 20 O -0.439 6.439 21 N -0.490 5.490 22 C 0.134 3.866 23 H 0.271 0.729 24 H 0.353 0.647 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.415 0.585 28 H 0.101 0.899 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.865 4.526 7.925 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.124 4.124 3 Si 0.683 3.317 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.573 4.573 8 H 0.111 0.889 9 C 0.152 3.848 10 O -0.364 6.364 11 C -0.053 4.053 12 N -0.351 5.351 13 C 0.402 3.598 14 O -0.396 6.396 15 C -0.063 4.063 16 N -0.081 5.081 17 N -0.212 5.212 18 H 0.290 0.710 19 C 0.134 3.866 20 O -0.239 6.239 21 N -0.228 5.228 22 C 0.013 3.987 23 H 0.081 0.919 24 H 0.205 0.795 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.274 0.726 28 H 0.119 0.881 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.929 3.097 7.746 15.387 hybrid contribution 0.612 2.482 0.688 2.647 sum 13.541 5.579 8.435 16.901 Atomic orbital electron populations 1.69852 1.06076 1.27638 1.47542 1.24992 0.94897 0.98984 0.93560 0.87384 0.80703 0.84392 0.79203 1.19329 1.20971 1.17816 1.21200 0.87447 0.95778 1.52874 0.88919 1.20576 0.92698 0.87858 0.83654 1.86463 1.67570 1.25618 1.56699 1.24822 0.87840 0.90573 1.02023 1.50039 1.11111 1.32807 1.41167 1.15914 0.80895 0.82720 0.80232 1.90802 1.65634 1.28126 1.55074 1.23837 0.90259 0.93770 0.98453 1.78637 1.10577 1.14111 1.04812 1.48609 1.12086 1.26849 1.33669 0.70968 1.21229 0.85556 0.88517 0.91296 1.84873 1.20072 1.73043 1.45959 1.70802 1.14842 1.25117 1.12069 1.23404 0.86576 0.97313 0.91405 0.91885 0.79542 0.90311 0.88429 0.72584 0.88084 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.14 13.96 55.43 0.77 -23.37 15 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.85 18.50 24.31 -169.99 -4.13 14.37 15 4 H -0.27 -5.64 7.05 56.52 0.40 -5.24 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.25 -5.15 5.16 56.52 0.29 -4.85 15 7 C -0.54 -13.51 9.20 -34.44 -0.32 -13.82 15 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 15 9 C 0.19 4.32 1.05 -90.85 -0.10 4.23 15 10 O -0.55 -12.78 13.35 -35.23 -0.47 -13.25 15 11 C 0.07 1.42 6.36 -2.77 -0.02 1.40 15 12 N -0.62 -12.65 3.62 -179.14 -0.65 -13.30 15 13 C 0.62 12.96 8.06 -12.33 -0.10 12.86 15 14 O -0.52 -12.15 17.81 5.31 0.09 -12.06 15 15 C 0.22 4.08 7.91 -156.53 -1.24 2.84 15 16 N -0.24 -3.92 11.13 32.04 0.36 -3.57 15 17 N -0.48 -5.40 7.47 29.39 0.22 -5.18 15 18 H 0.44 3.05 8.96 -182.35 -1.63 1.42 15 19 C 0.45 5.49 9.54 -89.82 -0.86 4.63 15 20 O -0.44 -3.51 13.63 -17.97 -0.25 -3.76 15 21 N -0.49 -8.32 11.22 -12.62 -0.14 -8.46 15 22 C 0.13 2.72 8.23 -2.97 -0.02 2.70 15 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 24 H 0.35 7.77 3.57 45.56 0.16 7.93 15 25 H 0.08 1.58 6.16 -51.93 -0.32 1.26 15 26 H 0.10 1.89 8.09 -51.93 -0.42 1.47 15 27 H 0.42 0.91 9.06 45.56 0.41 1.32 15 28 H 0.10 1.88 8.09 -51.93 -0.42 1.46 15 29 H 0.08 1.64 8.14 -51.93 -0.42 1.22 15 LS Contribution 260.07 15.07 3.92 3.92 Total: -1.00 -33.56 260.07 -5.33 -38.89 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -2.31 Total: 8.94 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: -2.75 Total: 16.83 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.56 Total: -53.88 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.62 Total: -29.06 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.13 Total: 14.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.56 -5.33 -38.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558966773.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.118 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds