Wall clock time and date at job start Sun Mar 29 2020 23:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47319 * 270.00332 * 3 2 1 5 5 H 1.48504 * 109.47023 * 30.00494 * 3 2 1 6 6 H 1.48498 * 109.47281 * 150.00227 * 3 2 1 7 7 C 1.37883 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00506 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99641 * 179.97438 * 7 2 1 10 10 O 1.42903 * 112.93967 * 309.66332 * 9 7 2 11 11 C 1.53939 * 113.74425 * 81.25316 * 9 7 2 12 12 N 1.47935 * 85.99585 * 138.00446 * 11 9 7 13 13 C 1.34770 * 134.50020 * 155.33740 * 12 11 9 14 14 O 1.21560 * 119.99772 * 180.02562 * 13 12 11 15 15 C 1.47846 * 120.00110 * 0.03493 * 13 12 11 16 16 N 1.31556 * 125.60671 * 359.68666 * 15 13 12 17 17 N 1.40428 * 106.83026 * 179.86224 * 16 15 13 18 18 H 0.96994 * 126.74163 * 180.15853 * 17 16 15 19 19 C 1.35145 * 106.51933 * 0.40446 * 17 16 15 20 20 O 1.35427 * 125.91649 * 179.75784 * 19 17 16 21 21 N 1.31048 * 108.16792 * 359.75115 * 19 17 16 22 22 C 1.47583 * 91.00485 * 335.36053 * 12 11 9 23 23 H 0.96997 * 120.00163 * 359.97438 * 1 2 3 24 24 H 0.96700 * 114.00311 * 50.33748 * 10 9 7 25 25 H 1.08997 * 113.77317 * 252.35938 * 11 9 7 26 26 H 1.09004 * 113.76958 * 23.76220 * 11 9 7 27 27 H 0.96697 * 113.99745 * 270.02505 * 20 19 17 28 28 H 1.08996 * 113.76772 * 270.33752 * 22 12 11 29 29 H 1.08991 * 113.86922 * 138.95154 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 8 4.0681 -0.3539 -1.0142 11 6 4.1319 -0.9801 1.3914 12 7 5.0941 -2.0375 1.0110 13 6 6.3468 -2.3563 1.3923 14 8 6.9103 -3.3100 0.8917 15 6 7.0356 -1.5464 2.4197 16 7 6.5343 -0.4928 3.0274 17 7 7.5151 -0.0343 3.9217 18 1 7.4459 0.7274 4.5182 19 6 8.5764 -0.8595 3.7842 20 8 9.7456 -0.7697 4.4617 21 7 8.2782 -1.7618 2.8818 22 6 4.1314 -2.6025 0.0456 23 1 -0.4850 0.8400 0.0004 24 1 3.7022 0.5411 -1.0279 25 1 4.5856 0.0020 1.5241 26 1 3.4734 -1.2606 2.2135 27 1 10.4108 -0.2190 4.0268 28 1 3.4727 -3.3583 0.4733 29 1 4.5829 -2.9153 -0.8958 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558966773.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:26 Heat of formation + Delta-G solvation = -1.163721 kcal Electronic energy + Delta-G solvation = -18679.520269 eV Core-core repulsion = 15413.504396 eV Total energy + Delta-G solvation = -3266.015872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.48577 -41.34709 -39.33718 -38.65268 -36.27062 -34.52652 -33.95468 -32.36818 -30.48988 -27.76190 -27.11599 -25.23363 -23.62204 -21.87712 -20.79504 -20.08297 -19.34957 -18.79013 -18.25551 -18.02694 -17.42366 -16.91693 -16.52482 -15.59232 -15.52547 -15.19239 -14.80293 -14.61829 -14.37170 -14.11448 -13.84769 -13.00826 -12.74399 -12.59365 -12.43617 -11.92869 -11.83768 -11.63978 -11.50875 -11.13677 -10.98374 -10.95503 -10.53557 -9.79903 -8.40010 -6.52351 -0.18463 0.72918 1.02110 1.27044 1.31205 1.36118 1.42551 2.06626 2.20753 2.47340 2.79872 3.16847 3.27347 3.49296 3.84193 4.27935 4.41311 4.47520 4.58338 4.67146 4.72753 4.82326 4.93171 5.29689 5.61509 6.06569 6.35133 6.44688 6.51342 6.57017 6.69967 6.88451 7.15775 8.75080 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.006416 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.634665 B = 4362.745023 C = 4929.342869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.030 3.970 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.230 1.230 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.559 6.559 11 C 0.085 3.915 12 N -0.617 5.617 13 C 0.617 3.383 14 O -0.556 6.556 15 C 0.201 3.799 16 N -0.252 5.252 17 N -0.452 5.452 18 H 0.465 0.535 19 C 0.475 3.525 20 O -0.429 6.429 21 N -0.531 5.531 22 C 0.132 3.868 23 H 0.273 0.727 24 H 0.357 0.643 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.443 0.557 28 H 0.114 0.886 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.943 6.346 9.327 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.171 4.171 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.154 1.154 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.144 3.856 10 O -0.371 6.371 11 C -0.037 4.037 12 N -0.351 5.351 13 C 0.403 3.597 14 O -0.432 6.432 15 C -0.083 4.083 16 N -0.091 5.091 17 N -0.189 5.189 18 H 0.317 0.683 19 C 0.159 3.841 20 O -0.234 6.234 21 N -0.271 5.271 22 C 0.011 3.989 23 H 0.083 0.917 24 H 0.209 0.791 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.308 0.692 28 H 0.132 0.868 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.053 4.958 9.176 18.314 hybrid contribution 0.028 1.893 0.327 1.921 sum 15.082 6.851 9.503 19.097 Atomic orbital electron populations 1.69989 1.07964 1.28781 1.49276 1.25787 0.95573 1.02770 0.93005 0.86412 0.80256 0.79539 0.79984 1.18235 1.20827 1.15388 1.21305 0.89134 0.94807 1.52577 0.92035 1.20587 0.91071 0.89132 0.84821 1.86461 1.67418 1.26018 1.57159 1.24634 0.87532 0.91022 1.00554 1.49975 1.11243 1.32780 1.41091 1.16214 0.80583 0.82586 0.80350 1.90767 1.66271 1.29667 1.56487 1.23190 0.91134 0.94792 0.99208 1.78491 1.11896 1.13384 1.05379 1.48402 1.10856 1.26912 1.32693 0.68333 1.21048 0.86563 0.86995 0.89481 1.84886 1.19223 1.73824 1.45418 1.70685 1.14711 1.27484 1.14214 1.23438 0.86836 0.96709 0.91917 0.91723 0.79071 0.89428 0.87640 0.69223 0.86816 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.74 13.96 21.45 0.30 -51.44 15 2 C 0.03 1.54 5.47 84.66 0.46 2.01 15 3 Si 0.91 37.11 24.31 68.60 1.67 38.78 15 4 H -0.26 -9.99 7.05 99.48 0.70 -9.29 15 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 15 6 H -0.23 -8.41 5.16 99.48 0.51 -7.90 15 7 C -0.54 -27.54 9.20 25.60 0.24 -27.30 15 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 15 9 C 0.18 8.12 1.05 -10.88 -0.01 8.11 15 10 O -0.56 -24.98 13.35 -148.98 -1.99 -26.97 15 11 C 0.08 3.30 6.36 86.41 0.55 3.85 15 12 N -0.62 -24.77 3.62 -842.78 -3.05 -27.82 15 13 C 0.62 25.51 8.06 86.79 0.70 26.21 15 14 O -0.56 -25.95 17.81 -3.90 -0.07 -26.02 15 15 C 0.20 7.10 7.91 137.18 1.08 8.18 15 16 N -0.25 -7.45 11.13 -52.56 -0.58 -8.04 15 17 N -0.45 -8.58 7.47 -172.41 -1.29 -9.86 15 18 H 0.47 4.41 8.96 -213.12 -1.91 2.50 15 19 C 0.47 10.02 9.54 180.07 1.72 11.74 15 20 O -0.43 -5.11 13.63 -87.22 -1.19 -6.29 15 21 N -0.53 -17.05 11.22 -307.45 -3.45 -20.50 15 22 C 0.13 5.34 8.23 86.49 0.71 6.06 15 23 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 24 H 0.36 14.89 3.57 -74.06 -0.26 14.63 15 25 H 0.09 3.26 6.16 -2.39 -0.01 3.25 15 26 H 0.11 3.93 8.09 -2.39 -0.02 3.91 15 27 H 0.44 -0.09 9.06 -74.06 -0.67 -0.76 15 28 H 0.11 4.25 8.09 -2.39 -0.02 4.23 15 29 H 0.08 3.30 8.14 -2.39 -0.02 3.28 15 Total: -1.00 -73.25 260.07 -5.99 -79.24 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -1.79 Total: 20.09 kcal Atomic # 6 Polarization: 33.40 SS G_CDS: 5.45 Total: 38.85 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -8.07 Total: -117.66 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -3.25 Total: -59.29 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 1.67 Total: 38.78 kcal Total: -73.25 -5.99 -79.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558966773.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.073 kcal (2) G-P(sol) polarization free energy of solvation -73.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds