Wall clock time and date at job start Sun Mar 29 2020 23:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99891 * 2 1 4 4 H 1.48503 * 109.46742 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47273 * 300.00499 * 3 2 1 6 6 H 1.48503 * 109.46732 * 60.00352 * 3 2 1 7 7 C 1.37878 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00128 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47093 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99774 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99679 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.46576 * 179.97438 * 13 11 10 15 15 C 1.34784 * 126.58671 * 125.00421 * 14 13 11 16 16 C 1.36668 * 106.83741 * 180.23977 * 15 14 13 17 17 C 1.47378 * 125.78024 * 179.73707 * 16 15 14 18 18 O 1.21518 * 120.00371 * 359.97438 * 17 16 15 19 19 O 1.34755 * 119.99812 * 179.97438 * 17 16 15 20 20 N 1.34445 * 108.43336 * 359.59971 * 16 15 14 21 21 N 1.28756 * 109.51685 * 0.40680 * 20 16 15 22 22 H 0.96999 * 120.00029 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46870 * 60.00082 * 9 7 2 24 24 H 1.08997 * 109.47202 * 299.99942 * 9 7 2 25 25 H 0.97002 * 120.00008 * 359.97438 * 10 9 7 26 26 H 1.08994 * 109.47229 * 59.99942 * 13 11 10 27 27 H 1.08997 * 109.47055 * 299.99538 * 13 11 10 28 28 H 1.08002 * 126.57778 * 359.96682 * 15 14 13 29 29 H 0.96698 * 116.99714 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 7 2.0006 -7.2975 -0.0015 15 6 2.1362 -8.3035 -0.8882 16 6 1.2599 -9.2828 -0.5129 17 6 1.0611 -10.5711 -1.2005 18 8 1.7083 -10.8355 -2.1944 19 8 0.1617 -11.4558 -0.7271 20 7 0.6120 -8.8731 0.5917 21 7 1.0240 -7.6985 0.9211 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0009 26 1 3.3598 -5.9714 0.8883 27 1 3.3596 -5.9706 -0.8917 28 1 2.8054 -8.3288 -1.7355 29 1 0.0662 -12.2869 -1.2120 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068243.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:16 Heat of formation + Delta-G solvation = -27.860406 kcal Electronic energy + Delta-G solvation = -17547.062113 eV Core-core repulsion = 14279.888585 eV Total energy + Delta-G solvation = -3267.173527 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.35697 -40.01291 -39.06179 -36.27572 -34.75613 -34.31696 -32.51715 -31.25738 -29.24793 -26.97417 -24.66384 -23.31283 -22.16734 -21.34016 -20.12738 -18.50966 -17.81790 -17.48231 -16.36313 -16.35969 -15.81364 -15.31068 -15.23877 -14.78583 -14.72966 -14.10119 -13.77745 -13.09138 -13.00868 -12.17292 -12.11916 -11.83600 -11.76436 -11.38162 -11.07279 -11.00248 -10.97317 -10.76897 -10.42649 -9.55154 -9.52082 -9.32339 -8.88731 -8.13988 -6.27367 -4.35783 0.88331 1.47449 1.77676 2.79128 2.88861 2.91422 3.16860 3.23764 3.26537 3.58284 4.09280 4.23937 4.37213 4.54953 4.78473 4.90786 5.04144 5.09228 5.25999 5.64826 6.09181 6.20110 7.10024 7.13405 7.34934 7.49101 7.60867 7.82569 7.93847 8.31869 8.56631 8.80117 9.31094 10.82648 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.064294 B = 0.003451 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.395371 B = 8111.917410 C = 8241.538124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.703 5.703 11 C 0.485 3.515 12 O -0.525 6.525 13 C 0.096 3.904 14 N -0.340 5.340 15 C 0.105 3.895 16 C -0.101 4.101 17 C 0.582 3.418 18 O -0.518 6.518 19 O -0.497 6.497 20 N -0.191 5.191 21 N -0.018 5.018 22 H 0.267 0.733 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.393 0.607 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.209 0.791 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -16.250 -2.272 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.352 5.352 11 C 0.266 3.734 12 O -0.402 6.402 13 C -0.029 4.029 14 N -0.123 5.123 15 C -0.053 4.053 16 C -0.237 4.237 17 C 0.424 3.576 18 O -0.406 6.406 19 O -0.307 6.307 20 N -0.066 5.066 21 N 0.001 4.999 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.226 0.774 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.225 0.775 29 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 6.895 -15.518 -1.079 17.015 hybrid contribution 1.439 0.434 -1.260 1.962 sum 8.334 -15.083 -2.339 17.391 Atomic orbital electron populations 1.69977 1.06156 1.27436 1.48422 1.24965 0.94935 0.99580 0.94521 0.86328 0.79747 0.82783 0.77851 1.19596 1.20748 1.20711 1.21212 0.93316 0.90231 1.53818 0.91687 1.19202 0.88130 0.81528 0.98107 1.46411 1.11556 1.05417 1.71864 1.20084 0.89361 0.84371 0.79599 1.90804 1.15898 1.84172 1.49293 1.22048 0.94025 0.79462 1.07373 1.50017 1.28590 1.13572 1.20098 1.23278 0.99235 0.87215 0.95561 1.20064 1.05452 0.97336 1.00852 1.19072 0.75967 0.82139 0.80404 1.90926 1.47000 1.77423 1.25293 1.84660 1.57113 1.30942 1.57934 1.74836 1.17607 1.04375 1.09820 1.82301 1.01191 1.05396 1.11061 0.92328 0.95286 0.95138 0.77358 0.85366 0.84906 0.77463 0.72699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.26 13.29 55.43 0.74 -24.52 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.55 -13.99 9.28 -34.44 -0.32 -14.31 15 8 H 0.07 1.53 7.60 -52.48 -0.40 1.13 15 9 C 0.25 6.21 5.43 -5.20 -0.03 6.18 15 10 N -0.70 -12.81 5.55 -61.47 -0.34 -13.15 15 11 C 0.48 8.37 7.86 -10.98 -0.09 8.28 15 12 O -0.53 -11.98 15.73 5.56 0.09 -11.89 15 13 C 0.10 1.01 7.02 -5.19 -0.04 0.97 15 14 N -0.34 -4.49 3.41 -62.23 -0.21 -4.70 15 15 C 0.10 1.16 11.27 -16.82 -0.19 0.97 15 16 C -0.10 -1.36 7.02 -83.57 -0.59 -1.95 15 17 C 0.58 6.99 8.33 34.45 0.29 7.28 15 18 O -0.52 -6.75 17.65 -19.28 -0.34 -7.09 15 19 O -0.50 -4.87 13.44 -40.64 -0.55 -5.41 15 20 N -0.19 -3.13 12.39 32.83 0.41 -2.72 15 21 N -0.02 -0.30 12.88 60.35 0.78 0.47 15 22 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.39 5.66 8.32 -40.82 -0.34 5.32 15 26 H 0.13 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.13 0.78 8.08 -51.93 -0.42 0.36 15 28 H 0.21 1.36 8.06 -52.49 -0.42 0.94 15 29 H 0.41 1.73 9.11 45.56 0.42 2.14 15 LS Contribution 280.77 15.07 4.23 4.23 Total: -1.00 -36.82 280.77 -2.85 -39.66 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -1.57 Total: 1.08 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.06 Total: 9.03 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 1.37 Total: -44.62 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.80 Total: -24.39 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -36.82 -2.85 -39.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068243.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.803 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds