Wall clock time and date at job start Sun Mar 29 2020 23:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99891 * 2 1 4 4 H 1.48503 * 109.46742 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47273 * 300.00499 * 3 2 1 6 6 H 1.48503 * 109.46732 * 60.00352 * 3 2 1 7 7 C 1.37878 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00128 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47093 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99774 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99679 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.46576 * 179.97438 * 13 11 10 15 15 C 1.34784 * 126.58671 * 125.00421 * 14 13 11 16 16 C 1.36668 * 106.83741 * 180.23977 * 15 14 13 17 17 C 1.47378 * 125.78024 * 179.73707 * 16 15 14 18 18 O 1.21518 * 120.00371 * 359.97438 * 17 16 15 19 19 O 1.34755 * 119.99812 * 179.97438 * 17 16 15 20 20 N 1.34445 * 108.43336 * 359.59971 * 16 15 14 21 21 N 1.28756 * 109.51685 * 0.40680 * 20 16 15 22 22 H 0.96999 * 120.00029 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46870 * 60.00082 * 9 7 2 24 24 H 1.08997 * 109.47202 * 299.99942 * 9 7 2 25 25 H 0.97002 * 120.00008 * 359.97438 * 10 9 7 26 26 H 1.08994 * 109.47229 * 59.99942 * 13 11 10 27 27 H 1.08997 * 109.47055 * 299.99538 * 13 11 10 28 28 H 1.08002 * 126.57778 * 359.96682 * 15 14 13 29 29 H 0.96698 * 116.99714 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5614 -5.1049 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 7 2.0006 -7.2975 -0.0015 15 6 2.1362 -8.3035 -0.8882 16 6 1.2599 -9.2828 -0.5129 17 6 1.0611 -10.5711 -1.2005 18 8 1.7083 -10.8355 -2.1944 19 8 0.1617 -11.4558 -0.7271 20 7 0.6120 -8.8731 0.5917 21 7 1.0240 -7.6985 0.9211 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0009 26 1 3.3598 -5.9714 0.8883 27 1 3.3596 -5.9706 -0.8917 28 1 2.8054 -8.3288 -1.7355 29 1 0.0662 -12.2869 -1.2120 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068243.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:16 Heat of formation + Delta-G solvation = -60.323606 kcal Electronic energy + Delta-G solvation = -17548.469823 eV Core-core repulsion = 14279.888585 eV Total energy + Delta-G solvation = -3268.581237 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.35827 -40.92987 -40.50084 -37.12403 -36.29724 -35.60944 -34.40502 -32.24388 -30.57817 -28.61990 -25.62106 -24.97303 -23.46836 -22.32928 -21.54386 -19.63033 -18.94602 -18.59392 -17.86951 -17.38885 -17.03868 -16.80193 -16.46735 -16.11707 -15.89720 -15.45435 -14.72716 -14.59045 -14.33741 -14.03619 -13.54698 -13.09210 -12.91006 -12.76377 -12.61023 -12.41269 -12.21650 -11.90703 -11.82750 -11.46519 -10.86797 -10.83464 -10.47832 -9.91902 -8.29975 -6.46690 -0.00351 0.41636 0.89987 1.44978 1.45434 1.57284 1.58860 1.92874 1.99794 2.24153 2.44998 3.06074 3.19712 3.53348 3.73781 3.84438 4.05017 4.09716 4.39145 4.70772 5.07536 5.21489 5.25251 5.42918 5.46881 5.64038 5.82537 6.64362 6.76654 6.77568 7.02463 7.22178 7.39842 8.82280 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.064294 B = 0.003451 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.395371 B = 8111.917410 C = 8241.538124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.985 3.015 4 H -0.248 1.248 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.267 3.733 10 N -0.695 5.695 11 C 0.480 3.520 12 O -0.588 6.588 13 C 0.108 3.892 14 N -0.343 5.343 15 C 0.131 3.869 16 C -0.125 4.125 17 C 0.589 3.411 18 O -0.530 6.530 19 O -0.500 6.500 20 N -0.217 5.217 21 N -0.073 5.073 22 H 0.268 0.732 23 H -0.012 1.012 24 H -0.015 1.015 25 H 0.416 0.584 26 H 0.167 0.833 27 H 0.196 0.804 28 H 0.259 0.741 29 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.932 -16.555 -3.241 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.808 3.192 4 H -0.171 1.171 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.109 0.891 9 C 0.144 3.856 10 N -0.346 5.346 11 C 0.266 3.734 12 O -0.468 6.468 13 C -0.015 4.015 14 N -0.126 5.126 15 C -0.026 4.026 16 C -0.262 4.262 17 C 0.431 3.569 18 O -0.419 6.419 19 O -0.313 6.313 20 N -0.092 5.092 21 N -0.054 5.054 22 H 0.076 0.924 23 H 0.006 0.994 24 H 0.003 0.997 25 H 0.254 0.746 26 H 0.185 0.815 27 H 0.213 0.787 28 H 0.275 0.725 29 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 10.395 -15.867 -2.033 19.078 hybrid contribution 0.333 0.414 -0.995 1.128 sum 10.728 -15.454 -3.028 19.055 Atomic orbital electron populations 1.70150 1.08418 1.28486 1.50142 1.26090 0.95713 1.04072 0.93980 0.85105 0.79329 0.77320 0.77417 1.17099 1.20768 1.20889 1.21671 0.94581 0.90249 1.52534 0.89064 1.18548 0.88680 0.84254 0.94133 1.46009 1.11682 1.04723 1.72215 1.21234 0.89802 0.85336 0.77076 1.90790 1.19330 1.85176 1.51529 1.22339 0.91676 0.75163 1.12309 1.50183 1.28046 1.14558 1.19803 1.24077 0.98091 0.85358 0.95105 1.20599 1.06118 0.98739 1.00738 1.18874 0.75982 0.81999 0.79997 1.90918 1.47614 1.77711 1.25672 1.84620 1.56308 1.32041 1.58351 1.74784 1.18479 1.04628 1.11293 1.82237 1.03669 1.06110 1.13426 0.92362 0.99406 0.99686 0.74631 0.81537 0.78659 0.72488 0.70025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.89 15 2 C 0.00 0.05 5.46 84.66 0.46 0.51 15 3 Si 0.98 40.56 29.54 68.60 2.03 42.58 15 4 H -0.25 -9.18 7.11 99.48 0.71 -8.48 15 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.55 -28.09 9.28 25.60 0.24 -27.85 15 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 15 9 C 0.27 13.68 5.43 85.63 0.46 14.15 15 10 N -0.70 -24.68 5.55 -466.79 -2.59 -27.27 15 11 C 0.48 16.12 7.86 87.66 0.69 16.81 15 12 O -0.59 -27.69 15.73 -3.03 -0.05 -27.73 15 13 C 0.11 1.83 7.02 85.63 0.60 2.44 15 14 N -0.34 -8.20 3.41 -350.79 -1.20 -9.39 15 15 C 0.13 2.47 11.27 83.87 0.95 3.41 15 16 C -0.12 -3.20 7.02 40.78 0.29 -2.91 15 17 C 0.59 13.24 8.33 70.23 0.59 13.82 15 18 O -0.53 -12.59 17.65 19.78 0.35 -12.24 15 19 O -0.50 -9.23 13.44 -56.66 -0.76 -9.99 15 20 N -0.22 -7.15 12.39 -50.04 -0.62 -7.77 15 21 N -0.07 -2.51 12.88 37.02 0.48 -2.03 15 22 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 15 25 H 0.42 10.74 8.32 -92.71 -0.77 9.97 15 26 H 0.17 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.20 0.94 8.08 -2.39 -0.02 0.92 15 28 H 0.26 1.92 8.06 -2.91 -0.02 1.89 15 29 H 0.44 2.95 9.11 -74.06 -0.67 2.28 15 Total: -1.00 -87.42 280.77 1.98 -85.44 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -0.22 Total: 2.92 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 4.27 Total: 20.38 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -3.64 Total: -101.36 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.46 Total: -49.97 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -87.42 1.98 -85.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068243.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.116 kcal (2) G-P(sol) polarization free energy of solvation -87.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds