Wall clock time and date at job start Sun Mar 29 2020 23:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00195 * 2 1 4 4 H 1.48499 * 109.46989 * 276.01210 * 3 2 1 5 5 H 1.48498 * 109.46819 * 36.00873 * 3 2 1 6 6 H 1.48495 * 109.47310 * 156.01162 * 3 2 1 7 7 C 1.38811 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00031 * 338.31193 * 7 2 1 9 9 N 1.36940 * 120.00075 * 158.32093 * 7 2 1 10 10 C 1.46496 * 119.99735 * 322.56775 * 9 7 2 11 11 C 1.50701 * 109.47818 * 263.60933 * 10 9 7 12 12 O 1.20823 * 119.99485 * 0.02562 * 11 10 9 13 13 O 1.34219 * 120.00279 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99978 * 142.57469 * 9 7 2 15 15 C 1.50699 * 109.47231 * 269.99396 * 14 9 7 16 16 C 1.38637 * 120.79896 * 105.00160 * 15 14 9 17 17 C 1.38183 * 119.19186 * 180.02562 * 16 15 14 18 18 N 1.31878 * 120.82130 * 0.02562 * 17 16 15 19 19 C 1.31837 * 121.75069 * 359.97438 * 18 17 16 20 20 C 1.38464 * 120.72860 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.44718 * 179.97438 * 20 19 18 22 22 H 0.97003 * 120.00189 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47480 * 23.61397 * 10 9 7 24 24 H 1.09003 * 109.47138 * 143.60626 * 10 9 7 25 25 H 0.96703 * 117.00439 * 179.97438 * 13 11 10 26 26 H 1.09003 * 109.46783 * 149.99503 * 14 9 7 27 27 H 1.08995 * 109.47204 * 29.99864 * 14 9 7 28 28 H 1.08001 * 120.39955 * 0.04732 * 16 15 14 29 29 H 1.08001 * 119.58859 * 179.72034 * 17 16 15 30 30 H 1.08008 * 119.63421 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3707 2.1197 -1.3924 5 1 1.5169 2.6127 0.8231 6 1 3.6055 1.4069 0.5692 7 6 2.0102 -1.2022 -0.0005 8 1 1.5275 -2.1045 0.3447 9 7 3.3069 -1.2439 -0.4386 10 6 3.7230 -0.4187 -1.5753 11 6 3.6802 -1.2423 -2.8366 12 8 3.3370 -2.3998 -2.7908 13 8 4.0235 -0.6900 -4.0107 14 6 4.2780 -2.1140 0.2292 15 6 4.9457 -1.3561 1.3476 16 6 4.6112 -1.6019 2.6704 17 6 5.2439 -0.8873 3.6696 18 7 6.1557 0.0198 3.3779 19 6 6.5004 0.2815 2.1326 20 6 5.9106 -0.3950 1.0782 21 9 6.2678 -0.1219 -0.1957 22 1 -0.4850 0.8401 0.0004 23 1 3.0479 0.4315 -1.6735 24 1 4.7386 -0.0588 -1.4106 25 1 3.9807 -1.2579 -4.7923 26 1 5.0304 -2.4380 -0.4899 27 1 3.7654 -2.9855 0.6362 28 1 3.8654 -2.3432 2.9168 29 1 4.9849 -1.0704 4.7020 30 1 7.2512 1.0318 1.9327 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:14 Heat of formation + Delta-G solvation = -69.640641 kcal Electronic energy + Delta-G solvation = -19214.138924 eV Core-core repulsion = 15925.233708 eV Total energy + Delta-G solvation = -3288.905216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.74943 -39.75000 -39.39888 -36.35075 -35.17244 -32.87409 -31.53753 -30.55001 -28.10964 -26.48667 -23.23908 -23.16063 -21.76515 -20.36257 -17.51762 -17.32719 -17.27597 -16.81095 -16.34796 -15.87849 -15.65463 -15.16169 -14.63526 -14.14030 -13.89944 -13.60636 -13.13827 -13.06315 -12.96126 -12.49609 -12.12881 -12.06086 -11.41177 -11.03038 -10.89188 -10.72176 -10.35003 -9.91279 -9.78789 -9.39003 -9.30121 -8.79617 -8.65465 -7.27956 -6.23706 -3.69705 1.22531 1.40788 2.97407 3.13417 3.32987 3.34301 3.66650 3.92131 4.28101 4.34964 4.67454 4.78850 4.96181 4.98807 5.18417 5.25232 5.72439 5.76605 5.87219 6.01359 6.05501 6.08370 6.18833 6.35602 6.54302 6.92332 7.12334 7.69745 8.05033 8.11553 8.54147 8.72130 9.40265 9.73296 10.90054 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.010674 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.785615 B = 2622.579668 C = 3231.728685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.044 3.956 3 Si 0.862 3.138 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.276 4.276 8 H 0.088 0.912 9 N -0.562 5.562 10 C 0.127 3.873 11 C 0.446 3.554 12 O -0.506 6.506 13 O -0.533 6.533 14 C 0.182 3.818 15 C -0.073 4.073 16 C -0.128 4.128 17 C 0.081 3.919 18 N -0.473 5.473 19 C 0.065 3.935 20 C 0.049 3.951 21 F -0.131 7.131 22 H 0.268 0.732 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.391 0.609 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.158 0.842 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -0.720 1.171 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.159 4.159 3 Si 0.691 3.309 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.404 4.404 8 H 0.106 0.894 9 N -0.281 5.281 10 C -0.001 4.001 11 C 0.285 3.715 12 O -0.392 6.392 13 O -0.344 6.344 14 C 0.057 3.943 15 C -0.085 4.085 16 C -0.149 4.149 17 C -0.075 4.075 18 N -0.182 5.182 19 C -0.093 4.093 20 C 0.026 3.974 21 F -0.110 7.110 22 H 0.078 0.922 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.248 0.752 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.162 0.838 29 H 0.175 0.825 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.331 -0.257 2.183 11.542 hybrid contribution -0.194 0.332 -1.523 1.571 sum 11.137 0.075 0.659 11.157 Atomic orbital electron populations 1.69847 1.05929 1.27222 1.49140 1.25492 0.95154 0.97809 0.97457 0.87139 0.81227 0.84883 0.77668 1.20707 1.21935 1.18708 1.18829 0.85213 0.94788 1.41554 0.89445 1.43809 1.07704 1.50065 1.26531 1.21476 1.02511 0.93690 0.82443 1.25990 0.72184 0.88155 0.85164 1.90609 1.43016 1.19007 1.86584 1.84675 1.81773 1.49243 1.18734 1.20025 0.91501 0.92599 0.90217 1.21660 0.92599 0.96214 0.97994 1.22021 1.00008 1.01174 0.91657 1.22743 0.92618 0.92113 1.00072 1.67632 1.14430 1.15962 1.20144 1.22696 1.00052 0.99293 0.87308 1.18692 0.99139 0.99673 0.79847 1.91373 1.90522 1.92810 1.36302 0.92171 0.88529 0.88637 0.75150 0.92071 0.90175 0.83780 0.82467 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.97 55.49 0.78 -25.08 16 2 C 0.04 1.20 5.28 -17.43 -0.09 1.11 16 3 Si 0.86 21.01 24.97 -169.99 -4.24 16.76 16 4 H -0.28 -6.61 6.71 56.52 0.38 -6.23 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.28 -7.33 9.92 -15.06 -0.15 -7.48 16 8 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 9 N -0.56 -12.87 1.58 -175.99 -0.28 -13.15 16 10 C 0.13 2.76 4.86 -5.20 -0.03 2.74 16 11 C 0.45 9.29 8.38 36.01 0.30 9.59 16 12 O -0.51 -11.83 17.13 -18.75 -0.32 -12.15 16 13 O -0.53 -8.97 13.42 -39.23 -0.53 -9.50 16 14 C 0.18 3.48 5.54 -5.20 -0.03 3.46 16 15 C -0.07 -1.29 5.51 -104.25 -0.57 -1.86 16 16 C -0.13 -1.99 9.77 -39.45 -0.39 -2.38 16 17 C 0.08 1.18 11.18 -17.55 -0.20 0.99 16 18 N -0.47 -7.56 10.36 -13.20 -0.14 -7.70 16 19 C 0.06 1.02 11.17 -17.47 -0.20 0.82 16 20 C 0.05 0.84 7.29 -39.28 -0.29 0.55 16 21 F -0.13 -2.26 14.04 2.25 0.03 -2.23 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.10 2.26 3.55 -51.93 -0.18 2.07 16 24 H 0.10 1.89 5.06 -51.93 -0.26 1.63 16 25 H 0.39 4.67 9.10 45.56 0.41 5.09 16 26 H 0.06 1.10 8.06 -51.93 -0.42 0.69 16 27 H 0.08 1.47 7.91 -51.93 -0.41 1.06 16 28 H 0.14 1.98 8.05 -52.49 -0.42 1.55 16 29 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 269.51 15.07 4.06 4.06 Total: -1.00 -32.21 269.51 -3.98 -36.19 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -1.71 Total: 5.25 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.63 Total: 7.54 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.36 Total: -45.92 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.85 Total: -21.65 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.03 Total: -2.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.24 Total: 16.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.21 -3.98 -36.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.449 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds