Wall clock time and date at job start Sun Mar 29 2020 23:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00195 * 2 1 4 4 H 1.48499 * 109.46989 * 276.01210 * 3 2 1 5 5 H 1.48498 * 109.46819 * 36.00873 * 3 2 1 6 6 H 1.48495 * 109.47310 * 156.01162 * 3 2 1 7 7 C 1.38811 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00031 * 338.31193 * 7 2 1 9 9 N 1.36940 * 120.00075 * 158.32093 * 7 2 1 10 10 C 1.46496 * 119.99735 * 322.56775 * 9 7 2 11 11 C 1.50701 * 109.47818 * 263.60933 * 10 9 7 12 12 O 1.20823 * 119.99485 * 0.02562 * 11 10 9 13 13 O 1.34219 * 120.00279 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99978 * 142.57469 * 9 7 2 15 15 C 1.50699 * 109.47231 * 269.99396 * 14 9 7 16 16 C 1.38637 * 120.79896 * 105.00160 * 15 14 9 17 17 C 1.38183 * 119.19186 * 180.02562 * 16 15 14 18 18 N 1.31878 * 120.82130 * 0.02562 * 17 16 15 19 19 C 1.31837 * 121.75069 * 359.97438 * 18 17 16 20 20 C 1.38464 * 120.72860 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.44718 * 179.97438 * 20 19 18 22 22 H 0.97003 * 120.00189 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47480 * 23.61397 * 10 9 7 24 24 H 1.09003 * 109.47138 * 143.60626 * 10 9 7 25 25 H 0.96703 * 117.00439 * 179.97438 * 13 11 10 26 26 H 1.09003 * 109.46783 * 149.99503 * 14 9 7 27 27 H 1.08995 * 109.47204 * 29.99864 * 14 9 7 28 28 H 1.08001 * 120.39955 * 0.04732 * 16 15 14 29 29 H 1.08001 * 119.58859 * 179.72034 * 17 16 15 30 30 H 1.08008 * 119.63421 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3707 2.1197 -1.3924 5 1 1.5169 2.6127 0.8231 6 1 3.6055 1.4069 0.5692 7 6 2.0102 -1.2022 -0.0005 8 1 1.5275 -2.1045 0.3447 9 7 3.3069 -1.2439 -0.4386 10 6 3.7230 -0.4187 -1.5753 11 6 3.6802 -1.2423 -2.8366 12 8 3.3370 -2.3998 -2.7908 13 8 4.0235 -0.6900 -4.0107 14 6 4.2780 -2.1140 0.2292 15 6 4.9457 -1.3561 1.3476 16 6 4.6112 -1.6019 2.6704 17 6 5.2439 -0.8873 3.6696 18 7 6.1557 0.0198 3.3779 19 6 6.5004 0.2815 2.1326 20 6 5.9106 -0.3950 1.0782 21 9 6.2678 -0.1219 -0.1957 22 1 -0.4850 0.8401 0.0004 23 1 3.0479 0.4315 -1.6735 24 1 4.7386 -0.0588 -1.4106 25 1 3.9807 -1.2579 -4.7923 26 1 5.0304 -2.4380 -0.4899 27 1 3.7654 -2.9855 0.6362 28 1 3.8654 -2.3432 2.9168 29 1 4.9849 -1.0704 4.7020 30 1 7.2512 1.0318 1.9327 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:13 Heat of formation + Delta-G solvation = -92.244381 kcal Electronic energy + Delta-G solvation = -19215.119095 eV Core-core repulsion = 15925.233708 eV Total energy + Delta-G solvation = -3289.885388 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.04340 -41.16405 -40.85082 -37.99642 -36.77827 -34.51114 -33.31633 -31.76164 -29.73939 -28.21671 -24.82556 -24.46469 -23.25372 -21.99473 -19.15731 -19.07879 -18.57211 -18.28402 -17.80063 -17.32938 -17.08776 -16.72678 -16.41219 -15.77939 -15.05536 -14.95248 -14.82779 -14.71851 -14.36152 -14.21659 -13.65608 -13.49494 -13.05114 -12.77784 -12.54447 -12.32541 -12.16008 -11.85082 -11.54266 -10.88005 -10.65493 -10.51380 -9.89498 -9.13673 -8.32180 -5.76752 0.00720 0.13468 1.20770 1.28791 1.37528 1.45454 2.14830 2.28802 2.66633 2.97329 3.10381 3.23001 3.53973 3.74071 3.77677 3.98830 4.16265 4.32284 4.42309 4.55611 4.58780 4.78700 4.91156 4.94186 5.23476 5.68104 5.70490 5.76712 6.06997 6.66473 6.85276 7.13318 7.39333 7.77518 8.86011 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.010674 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.785615 B = 2622.579668 C = 3231.728685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.005 4.005 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.301 1.301 6 H -0.253 1.253 7 C -0.262 4.262 8 H 0.052 0.948 9 N -0.575 5.575 10 C 0.123 3.877 11 C 0.453 3.547 12 O -0.538 6.538 13 O -0.519 6.519 14 C 0.184 3.816 15 C -0.090 4.090 16 C -0.132 4.132 17 C 0.087 3.913 18 N -0.482 5.482 19 C 0.066 3.934 20 C 0.033 3.967 21 F -0.134 7.134 22 H 0.268 0.732 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.418 0.582 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.158 0.842 29 H 0.193 0.807 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.242 0.095 1.455 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.229 1.229 6 H -0.176 1.176 7 C -0.391 4.391 8 H 0.070 0.930 9 N -0.295 5.295 10 C -0.005 4.005 11 C 0.294 3.706 12 O -0.427 6.427 13 O -0.332 6.332 14 C 0.060 3.940 15 C -0.101 4.101 16 C -0.153 4.153 17 C -0.069 4.069 18 N -0.191 5.191 19 C -0.091 4.091 20 C 0.011 3.989 21 F -0.113 7.113 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.135 0.865 25 H 0.278 0.722 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.175 0.825 29 H 0.210 0.790 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 13.416 0.556 2.438 13.647 hybrid contribution -0.733 -0.037 -1.647 1.803 sum 12.682 0.519 0.791 12.717 Atomic orbital electron populations 1.69963 1.07540 1.27847 1.52183 1.26003 0.95574 1.00781 0.98030 0.86190 0.80121 0.80851 0.78029 1.19507 1.22874 1.17624 1.18626 0.86788 0.93464 1.40222 0.92990 1.43803 1.07210 1.50612 1.27864 1.21461 1.03185 0.93152 0.82737 1.25590 0.71585 0.87373 0.86092 1.90609 1.44569 1.20246 1.87258 1.84571 1.80712 1.49205 1.18673 1.19996 0.91019 0.92111 0.90919 1.21545 0.93657 0.96670 0.98247 1.22275 1.00207 1.01594 0.91198 1.23303 0.91329 0.90803 1.01471 1.67744 1.14790 1.16331 1.20194 1.23128 1.00004 0.99229 0.86778 1.18864 0.99669 1.00140 0.80207 1.91348 1.90546 1.92871 1.36499 0.92308 0.89989 0.86477 0.72159 0.91242 0.90231 0.82468 0.78984 0.79744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.97 21.65 0.30 -55.75 16 2 C -0.01 -0.31 5.28 84.86 0.45 0.14 16 3 Si 0.92 43.31 24.97 68.60 1.71 45.02 16 4 H -0.27 -11.99 6.71 99.48 0.67 -11.32 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.25 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.26 -14.13 9.92 84.03 0.83 -13.29 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 9 N -0.57 -26.02 1.58 -710.69 -1.12 -27.14 16 10 C 0.12 5.14 4.86 85.63 0.42 5.56 16 11 C 0.45 18.19 8.38 71.24 0.60 18.78 16 12 O -0.54 -24.75 17.13 21.97 0.38 -24.37 16 13 O -0.52 -16.04 13.42 -51.31 -0.69 -16.73 16 14 C 0.18 6.91 5.54 85.63 0.47 7.38 16 15 C -0.09 -3.03 5.51 -19.63 -0.11 -3.14 16 16 C -0.13 -3.85 9.77 22.35 0.22 -3.63 16 17 C 0.09 2.27 11.18 84.67 0.95 3.22 16 18 N -0.48 -13.86 10.36 -195.66 -2.03 -15.89 16 19 C 0.07 1.89 11.17 84.75 0.95 2.84 16 20 C 0.03 1.07 7.29 22.47 0.16 1.23 16 21 F -0.13 -4.29 14.04 44.97 0.63 -3.66 16 22 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 23 H 0.08 3.70 3.55 -2.38 -0.01 3.70 16 24 H 0.12 4.37 5.06 -2.39 -0.01 4.36 16 25 H 0.42 8.68 9.10 -74.06 -0.67 8.00 16 26 H 0.07 2.44 8.06 -2.39 -0.02 2.42 16 27 H 0.08 2.92 7.91 -2.39 -0.02 2.90 16 28 H 0.16 4.06 8.05 -2.91 -0.02 4.03 16 29 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -69.19 269.51 4.61 -64.58 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.48 Total: 14.85 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 4.94 Total: 19.09 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -2.84 Total: -98.78 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.31 Total: -41.10 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.63 Total: -3.66 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.71 Total: 45.02 kcal Total: -69.19 4.61 -64.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.667 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds