Wall clock time and date at job start Sun Mar 29 2020 23:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47279 * 2 1 4 4 C 1.35604 * 124.93312 * 125.01469 * 3 2 1 5 5 C 1.35336 * 107.17117 * 179.72973 * 4 3 2 6 6 N 1.48014 * 127.23306 * 180.22081 * 5 4 3 7 7 O 1.31695 * 119.99742 * 0.16903 * 6 5 4 8 8 O 1.31698 * 119.99943 * 180.16453 * 6 5 4 9 9 C 1.41555 * 105.54097 * 0.36307 * 5 4 3 10 10 C 1.47550 * 126.47308 * 179.89799 * 9 5 4 11 11 O 1.21493 * 120.00070 * 359.71265 * 10 9 5 12 12 N 1.34777 * 119.99986 * 179.43293 * 10 9 5 13 13 C 1.33322 * 120.00114 * 180.27613 * 12 10 9 14 14 H 1.08001 * 119.99639 * 0.02562 * 13 12 10 15 15 C 1.46782 * 119.99814 * 180.02562 * 13 12 10 16 16 N 1.29324 * 119.99732 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00398 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47112 * 90.00128 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00239 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99860 * 17 15 13 21 21 N 1.28479 * 124.93412 * 304.98611 * 3 2 1 22 22 H 1.09000 * 109.46970 * 299.99269 * 1 2 3 23 23 H 1.08993 * 109.47721 * 59.99723 * 1 2 3 24 24 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46970 * 240.00731 * 2 1 3 26 26 H 1.08993 * 109.47721 * 120.00277 * 2 1 3 27 27 H 1.08005 * 126.41566 * 359.97380 * 4 3 2 28 28 H 0.97001 * 119.99727 * 0.28316 * 12 10 9 29 29 H 0.96996 * 119.99791 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8786 1.9007 0.9105 5 6 3.0896 3.1931 0.5689 6 7 3.9585 4.1718 1.2603 7 8 4.6330 3.8113 2.3324 8 8 4.0570 5.4030 0.8033 9 6 2.3023 3.4133 -0.5867 10 6 2.1884 4.6751 -1.3430 11 8 2.8051 5.6576 -0.9819 12 7 1.4045 4.7362 -2.4377 13 6 1.3059 5.8748 -3.1243 14 1 1.8544 6.7480 -2.8034 15 6 0.4518 5.9414 -4.3162 16 7 0.3557 7.0460 -4.9818 17 14 -0.4976 4.4312 -4.8706 18 1 -1.8322 4.4189 -4.2198 19 1 -0.6664 4.4666 -6.3456 20 1 0.2514 3.2075 -4.4875 21 7 1.6942 2.2762 -0.8629 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.3167 1.3794 1.7488 28 1 0.9121 3.9518 -2.7260 29 1 -0.2084 7.0899 -5.7697 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626566711.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:37 Heat of formation + Delta-G solvation = 85.433308 kcal Electronic energy + Delta-G solvation = -18544.838764 eV Core-core repulsion = 15282.578020 eV Total energy + Delta-G solvation = -3262.260743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.95819 -38.26963 -37.87268 -34.83816 -34.07828 -33.50752 -32.30693 -31.24479 -30.35395 -26.32504 -25.74960 -23.89081 -21.59895 -21.24610 -19.47525 -19.06904 -17.89337 -17.14130 -16.64841 -16.59252 -15.93042 -15.13968 -15.03510 -14.41246 -13.77118 -13.62408 -13.52106 -12.88179 -12.82194 -12.52119 -12.44301 -11.87388 -11.40530 -11.21285 -10.80732 -10.58476 -10.34093 -10.22661 -9.92232 -9.83999 -9.60378 -9.27121 -8.58026 -8.42637 -6.78855 -3.75271 0.08240 1.49635 1.56655 2.13989 2.36637 2.89198 2.92217 2.96584 3.80260 4.02096 4.06995 4.16742 4.40252 4.46271 4.69377 4.78499 4.95645 5.03179 5.15021 5.33859 5.41097 5.73561 5.92417 6.38553 6.51019 6.99635 7.47574 7.66090 7.98182 8.20497 8.79810 9.21927 9.87717 10.29096 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.008069 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.128329 B = 3469.118894 C = 4904.551993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.274 5.274 4 C 0.072 3.928 5 C -0.086 4.086 6 N 0.010 4.990 7 O -0.256 6.256 8 O -0.075 6.075 9 C 0.096 3.904 10 C 0.454 3.546 11 O -0.538 6.538 12 N -0.516 5.516 13 C -0.316 4.316 14 H 0.131 0.869 15 C 0.053 3.947 16 N -0.811 5.811 17 Si 0.881 3.119 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.258 1.258 21 N -0.282 5.282 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.203 0.797 28 H 0.375 0.625 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -17.798 6.076 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.059 5.059 4 C -0.079 4.079 5 C -0.187 4.187 6 N 0.484 4.516 7 O -0.423 6.423 8 O -0.285 6.285 9 C -0.066 4.066 10 C 0.241 3.759 11 O -0.419 6.419 12 N -0.150 5.150 13 C -0.449 4.449 14 H 0.149 0.851 15 C -0.163 4.163 16 N -0.444 5.444 17 Si 0.705 3.295 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.182 1.182 21 N -0.116 5.116 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.220 0.780 28 H 0.208 0.792 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.258 -18.211 5.258 19.233 hybrid contribution -0.010 -0.619 0.225 0.659 sum -3.268 -18.830 5.483 19.882 Atomic orbital electron populations 1.22105 0.92542 1.03650 1.04487 1.22178 0.97162 0.75521 1.05362 1.45786 1.31055 1.11170 1.17866 1.22555 0.95442 0.92867 0.97085 1.20061 1.06885 0.90250 1.01485 1.49238 0.99064 1.02963 1.00351 1.96190 1.47205 1.85519 1.13401 1.96506 1.68204 0.96666 1.67139 1.22874 0.94760 0.94563 0.94376 1.15989 0.89228 0.85708 0.84970 1.90857 1.48673 1.33770 1.68608 1.41048 1.38525 1.12415 1.23005 1.20625 1.26779 0.91438 1.06052 0.85140 1.26745 0.96768 0.97173 0.95601 1.68608 1.33240 1.26862 1.15716 0.86621 0.80953 0.82405 0.79558 1.18789 1.19418 1.18250 1.73941 1.24202 0.97277 1.16170 0.91568 0.90322 0.89854 0.88070 0.87374 0.78015 0.79216 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.02 37.16 0.37 -0.76 15 2 C 0.12 0.78 7.12 -4.04 -0.03 0.75 15 3 N -0.27 -3.42 3.42 -61.19 -0.21 -3.63 15 4 C 0.07 0.97 11.21 -16.92 -0.19 0.78 15 5 C -0.09 -1.65 7.31 -79.72 -0.58 -2.24 15 6 N 0.01 0.22 4.98 34.07 0.17 0.39 15 7 O -0.26 -5.35 19.81 -31.57 -0.63 -5.97 15 8 O -0.07 -1.90 16.13 -40.08 -0.65 -2.55 15 9 C 0.10 2.01 7.12 -82.79 -0.59 1.42 15 10 C 0.45 11.44 7.75 -12.46 -0.10 11.35 15 11 O -0.54 -15.49 12.73 -19.41 -0.25 -15.74 15 12 N -0.52 -12.73 5.02 -10.66 -0.05 -12.79 15 13 C -0.32 -8.65 10.43 -13.45 -0.14 -8.79 15 14 H 0.13 4.05 7.31 -52.49 -0.38 3.66 15 15 C 0.05 1.34 5.69 -15.16 -0.09 1.25 15 16 N -0.81 -21.38 13.88 56.00 0.78 -20.61 15 17 Si 0.88 17.90 27.87 -169.99 -4.74 13.17 15 18 H -0.26 -5.22 7.11 56.52 0.40 -4.81 15 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 20 H -0.26 -4.97 6.61 56.52 0.37 -4.60 15 21 N -0.28 -4.81 11.36 33.41 0.38 -4.43 15 22 H 0.07 0.49 8.14 -51.93 -0.42 0.06 15 23 H 0.08 0.70 8.09 -51.93 -0.42 0.28 15 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 15 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 15 26 H 0.11 0.34 8.04 -51.93 -0.42 -0.08 15 27 H 0.20 1.78 8.06 -52.48 -0.42 1.36 15 28 H 0.37 8.29 5.67 -40.82 -0.23 8.06 15 29 H 0.29 6.82 8.26 -40.82 -0.34 6.48 15 LS Contribution 272.54 15.07 4.11 4.11 Total: -1.00 -34.04 272.54 -4.73 -38.77 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -2.30 Total: 5.52 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.34 Total: 3.76 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 1.06 Total: -41.06 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.52 Total: -24.26 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.74 Total: 13.17 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.04 -4.73 -38.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626566711.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.200 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds