Wall clock time and date at job start Sun Mar 29 2020 23:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47279 * 2 1 4 4 C 1.35604 * 124.93312 * 125.01469 * 3 2 1 5 5 C 1.35336 * 107.17117 * 179.72973 * 4 3 2 6 6 N 1.48014 * 127.23306 * 180.22081 * 5 4 3 7 7 O 1.31695 * 119.99742 * 0.16903 * 6 5 4 8 8 O 1.31698 * 119.99943 * 180.16453 * 6 5 4 9 9 C 1.41555 * 105.54097 * 0.36307 * 5 4 3 10 10 C 1.47550 * 126.47308 * 179.89799 * 9 5 4 11 11 O 1.21493 * 120.00070 * 359.71265 * 10 9 5 12 12 N 1.34777 * 119.99986 * 179.43293 * 10 9 5 13 13 C 1.33322 * 120.00114 * 180.27613 * 12 10 9 14 14 H 1.08001 * 119.99639 * 0.02562 * 13 12 10 15 15 C 1.46782 * 119.99814 * 180.02562 * 13 12 10 16 16 N 1.29324 * 119.99732 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00398 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47112 * 90.00128 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00239 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99860 * 17 15 13 21 21 N 1.28479 * 124.93412 * 304.98611 * 3 2 1 22 22 H 1.09000 * 109.46970 * 299.99269 * 1 2 3 23 23 H 1.08993 * 109.47721 * 59.99723 * 1 2 3 24 24 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46970 * 240.00731 * 2 1 3 26 26 H 1.08993 * 109.47721 * 120.00277 * 2 1 3 27 27 H 1.08005 * 126.41566 * 359.97380 * 4 3 2 28 28 H 0.97001 * 119.99727 * 0.28316 * 12 10 9 29 29 H 0.96996 * 119.99791 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8786 1.9007 0.9105 5 6 3.0896 3.1931 0.5689 6 7 3.9585 4.1718 1.2603 7 8 4.6330 3.8113 2.3324 8 8 4.0570 5.4030 0.8033 9 6 2.3023 3.4133 -0.5867 10 6 2.1884 4.6751 -1.3430 11 8 2.8051 5.6576 -0.9819 12 7 1.4045 4.7362 -2.4377 13 6 1.3059 5.8748 -3.1243 14 1 1.8544 6.7480 -2.8034 15 6 0.4518 5.9414 -4.3162 16 7 0.3557 7.0460 -4.9818 17 14 -0.4976 4.4312 -4.8706 18 1 -1.8322 4.4189 -4.2198 19 1 -0.6664 4.4666 -6.3456 20 1 0.2514 3.2075 -4.4875 21 7 1.6942 2.2762 -0.8629 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.3167 1.3794 1.7488 28 1 0.9121 3.9518 -2.7260 29 1 -0.2084 7.0899 -5.7697 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626566711.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:36 Heat of formation + Delta-G solvation = 58.819466 kcal Electronic energy + Delta-G solvation = -18545.992827 eV Core-core repulsion = 15282.578020 eV Total energy + Delta-G solvation = -3263.414806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.30562 -40.16407 -39.61772 -36.16659 -35.70168 -35.19820 -34.26186 -32.68964 -31.42486 -28.01173 -27.24454 -25.23328 -22.94225 -22.54291 -21.26798 -20.87901 -19.37387 -18.77908 -18.15095 -17.87233 -17.24167 -16.89751 -16.48090 -15.60838 -15.49915 -15.15245 -14.93221 -14.63239 -14.25339 -13.61365 -13.08041 -13.02657 -12.84678 -12.58239 -12.35879 -12.16172 -12.03027 -12.00695 -11.68268 -11.60989 -11.00190 -10.64745 -10.55633 -10.46743 -8.69664 -5.87821 -1.53915 0.06770 0.19542 0.62357 1.23604 1.25242 1.30556 1.39310 2.08866 2.19379 2.53645 2.94139 3.04578 3.23094 3.58407 3.93712 3.95423 4.01297 4.25822 4.34402 4.73705 4.81241 4.88235 5.13705 5.26570 5.34144 5.76365 5.87022 6.19589 6.31221 6.83355 7.24145 7.93408 8.43805 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.008069 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.128329 B = 3469.118894 C = 4904.551993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.252 5.252 4 C 0.128 3.872 5 C -0.122 4.122 6 N 0.019 4.981 7 O -0.172 6.172 8 O -0.214 6.214 9 C 0.066 3.934 10 C 0.452 3.548 11 O -0.582 6.582 12 N -0.516 5.516 13 C -0.376 4.376 14 H 0.064 0.936 15 C 0.013 3.987 16 N -0.864 5.864 17 Si 0.960 3.040 18 H -0.248 1.248 19 H -0.255 1.255 20 H -0.238 1.238 21 N -0.262 5.262 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.164 0.836 27 H 0.268 0.732 28 H 0.389 0.611 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -24.627 8.041 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 N -0.038 5.038 4 C -0.024 4.024 5 C -0.224 4.224 6 N 0.488 4.512 7 O -0.368 6.368 8 O -0.390 6.390 9 C -0.097 4.097 10 C 0.240 3.760 11 O -0.465 6.465 12 N -0.152 5.152 13 C -0.507 4.507 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.497 5.497 17 Si 0.778 3.222 18 H -0.172 1.172 19 H -0.178 1.178 20 H -0.162 1.162 21 N -0.096 5.096 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.136 0.864 25 H 0.141 0.859 26 H 0.182 0.818 27 H 0.284 0.716 28 H 0.224 0.776 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.179 -24.780 6.966 26.077 hybrid contribution 0.398 0.969 0.102 1.052 sum -3.780 -23.811 7.068 25.124 Atomic orbital electron populations 1.22155 0.92576 1.05417 1.02846 1.23019 0.97177 0.71943 1.09268 1.46644 1.29171 1.12198 1.15760 1.23479 0.92331 0.89848 0.96771 1.20490 1.07925 0.91917 1.02093 1.49587 0.98491 1.03309 0.99847 1.96106 1.44067 1.84736 1.11842 1.96593 1.73801 0.98459 1.70145 1.22154 0.97637 0.94202 0.95701 1.16757 0.87619 0.86973 0.84629 1.90842 1.49677 1.36410 1.69619 1.40713 1.39438 1.11987 1.23078 1.20027 1.30192 0.91119 1.09317 0.91784 1.27706 0.96687 1.01206 0.94223 1.68715 1.34645 1.29625 1.16695 0.85464 0.79416 0.77683 0.79661 1.17213 1.17828 1.16188 1.73887 1.22369 0.96669 1.16722 0.92219 0.93006 0.86442 0.85915 0.81810 0.71608 0.77597 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.02 71.98 0.72 -0.56 15 2 C 0.10 0.56 7.12 86.38 0.62 1.17 15 3 N -0.25 -4.73 3.42 -347.51 -1.19 -5.92 15 4 C 0.13 2.55 11.21 83.44 0.94 3.49 15 5 C -0.12 -4.43 7.31 36.52 0.27 -4.17 15 6 N 0.02 0.83 4.98 -46.11 -0.23 0.60 15 7 O -0.17 -6.51 19.81 3.52 0.07 -6.44 15 8 O -0.21 -11.86 16.13 11.66 0.19 -11.68 15 9 C 0.07 2.72 7.12 42.41 0.30 3.02 15 10 C 0.45 24.51 7.75 86.70 0.67 25.18 15 11 O -0.58 -37.34 12.73 20.00 0.25 -37.09 15 12 N -0.52 -27.21 5.02 -305.93 -1.54 -28.74 15 13 C -0.38 -22.70 10.43 86.70 0.90 -21.79 15 14 H 0.06 4.58 7.31 -2.91 -0.02 4.56 15 15 C 0.01 0.70 5.69 87.30 0.50 1.20 15 16 N -0.86 -48.82 13.88 23.26 0.32 -48.50 15 17 Si 0.96 37.23 27.87 68.60 1.91 39.14 15 18 H -0.25 -9.02 7.11 99.48 0.71 -8.31 15 19 H -0.25 -9.21 7.11 99.48 0.71 -8.50 15 20 H -0.24 -8.37 6.61 99.48 0.66 -7.71 15 21 N -0.26 -8.08 11.36 -48.23 -0.55 -8.62 15 22 H 0.06 0.55 8.14 -2.39 -0.02 0.53 15 23 H 0.05 0.70 8.09 -2.39 -0.02 0.68 15 24 H 0.12 0.14 8.14 -2.39 -0.02 0.12 15 25 H 0.12 0.37 8.14 -2.39 -0.02 0.35 15 26 H 0.16 -0.69 8.04 -2.39 -0.02 -0.71 15 27 H 0.27 1.87 8.06 -2.91 -0.02 1.84 15 28 H 0.39 17.55 5.67 -92.71 -0.53 17.03 15 29 H 0.30 14.87 8.26 -92.71 -0.77 14.10 15 Total: -1.00 -90.50 272.54 4.80 -85.71 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.64 Total: 13.98 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.91 Total: 7.55 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -3.18 Total: -91.19 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: 0.51 Total: -55.20 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 1.91 Total: 39.14 kcal Total: -90.50 4.80 -85.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626566711.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.525 kcal (2) G-P(sol) polarization free energy of solvation -90.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds