Wall clock time and date at job start Sun Mar 29 2020 23:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33636 * 126.03963 * 2 1 4 4 N 1.31780 * 114.50501 * 179.71601 * 3 2 1 5 5 C 1.29027 * 117.11982 * 0.46435 * 4 3 2 6 6 C 1.50709 * 124.91584 * 179.81440 * 5 4 3 7 7 N 1.46901 * 109.46798 * 89.70108 * 6 5 4 8 8 C 1.47962 * 110.99645 * 170.00157 * 7 6 5 9 9 C 1.53939 * 86.17954 * 222.41370 * 8 7 6 10 10 O 1.42901 * 113.73443 * 269.25769 * 9 8 7 11 11 C 1.50699 * 113.73181 * 138.07765 * 9 8 7 12 12 H 1.07999 * 120.00015 * 4.91121 * 11 9 8 13 13 C 1.37879 * 119.99686 * 184.90847 * 11 9 8 14 14 N 1.31521 * 119.99972 * 13.82310 * 13 11 9 15 15 Si 1.86792 * 119.99875 * 193.81760 * 13 11 9 16 16 H 1.48504 * 109.47216 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47601 * 300.00327 * 15 13 11 18 18 H 1.48506 * 109.47155 * 60.00602 * 15 13 11 19 19 C 1.47957 * 111.00157 * 70.64161 * 7 6 5 20 20 S 1.70975 * 110.17055 * 359.55376 * 5 4 3 21 21 H 1.09001 * 109.47656 * 270.04968 * 1 2 3 22 22 H 1.09007 * 109.46663 * 30.05125 * 1 2 3 23 23 H 1.09000 * 109.46790 * 150.04670 * 1 2 3 24 24 H 1.08006 * 122.74998 * 359.95117 * 3 2 1 25 25 H 1.08996 * 109.47024 * 329.69707 * 6 5 4 26 26 H 1.08995 * 109.46678 * 209.69791 * 6 5 4 27 27 H 1.08999 * 113.76019 * 108.09949 * 8 7 6 28 28 H 1.09000 * 113.75802 * 336.73263 * 8 7 6 29 29 H 0.96693 * 113.99776 * 171.47023 * 10 9 8 30 30 H 0.97001 * 119.99982 * 5.87544 * 14 13 11 31 31 H 1.08994 * 113.76072 * 23.25977 * 19 7 6 32 32 H 1.09001 * 113.75391 * 251.89917 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8171 0.0059 5 6 3.9311 -0.4257 0.0016 6 6 5.3532 -0.9246 0.0031 7 7 5.8141 -1.0856 1.3887 8 6 7.1118 -1.7949 1.4367 9 6 6.5235 -2.5767 2.6251 10 8 6.7817 -1.9738 3.8946 11 6 6.8410 -4.0496 2.5989 12 1 7.4970 -4.4472 1.8386 13 6 6.2942 -4.8897 3.5457 14 7 5.2968 -4.4744 4.2957 15 14 6.9698 -6.6175 3.7629 16 1 6.2149 -7.3129 4.8362 17 1 6.8257 -7.3692 2.4903 18 1 8.4057 -6.5444 4.1348 19 6 5.1417 -2.2304 2.0416 20 16 2.5436 -1.4248 0.0013 21 1 -0.3634 0.0009 1.0276 22 1 -0.3633 0.8896 -0.5147 23 1 -0.3633 -0.8904 -0.5131 24 1 1.9025 2.0875 -0.0008 25 1 5.9910 -0.2055 -0.5108 26 1 5.4018 -1.8850 -0.5099 27 1 7.9524 -1.1550 1.7050 28 1 7.3080 -2.4113 0.5594 29 1 6.3074 -2.3860 4.6295 30 1 4.8898 -3.6103 4.1265 31 1 4.7617 -2.9742 1.3413 32 1 4.4082 -1.9384 2.7931 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642834276.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:09 Heat of formation + Delta-G solvation = 28.264192 kcal Electronic energy + Delta-G solvation = -16619.262429 eV Core-core repulsion = 13900.815861 eV Total energy + Delta-G solvation = -2718.446568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77272 -39.02820 -34.90504 -32.81434 -32.25119 -30.03871 -26.74233 -25.51640 -25.12583 -23.71902 -22.11022 -19.32676 -18.75073 -18.06352 -17.66542 -15.60517 -15.22548 -15.00432 -14.55079 -14.24567 -13.89204 -13.83289 -13.47497 -12.93634 -12.86869 -12.61562 -12.20004 -12.01015 -11.32404 -11.13516 -11.06340 -10.97586 -10.77401 -10.33819 -10.17355 -9.42098 -9.25917 -9.06990 -8.79268 -8.67036 -8.38588 -7.86386 -6.58743 -4.37360 0.81337 1.45875 1.89535 2.96013 3.33341 3.37629 3.55531 4.26067 4.36637 4.64711 4.90645 4.94702 5.07863 5.17103 5.36876 5.44946 5.62675 5.63915 5.72662 5.80501 5.85628 5.96522 6.15687 6.28867 6.45279 6.65509 6.89286 7.00250 7.66269 7.80363 7.91897 8.17016 8.55016 9.01427 9.33559 10.72653 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.030585 B = 0.005919 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.268979 B = 4729.784200 C = 5177.853106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.238 4.238 3 C 0.032 3.968 4 N -0.465 5.465 5 C 0.069 3.931 6 C 0.091 3.909 7 N -0.468 5.468 8 C 0.021 3.979 9 C 0.225 3.775 10 O -0.564 6.564 11 C -0.620 4.620 12 H 0.060 0.940 13 C 0.036 3.964 14 N -0.899 5.899 15 Si 1.064 2.936 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.025 4.025 20 S 0.127 5.873 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.171 0.829 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.372 0.628 30 H 0.270 0.730 31 H 0.066 0.934 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 5.123 -9.026 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.360 4.360 3 C -0.120 4.120 4 N -0.179 5.179 5 C -0.209 4.209 6 C -0.040 4.040 7 N -0.192 5.192 8 C -0.107 4.107 9 C 0.184 3.816 10 O -0.371 6.371 11 C -0.658 4.658 12 H 0.078 0.922 13 C -0.170 4.170 14 N -0.536 5.536 15 Si 0.891 3.109 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.154 4.154 20 S 0.382 5.618 21 H 0.093 0.907 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.188 0.812 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.220 0.780 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.067 4.152 -8.213 11.603 hybrid contribution -0.621 1.217 -1.130 1.773 sum -7.688 5.368 -9.343 13.237 Atomic orbital electron populations 1.20181 0.87019 1.03027 1.02837 1.26000 1.01537 0.95541 1.12886 1.21667 0.87127 0.99832 1.03329 1.66233 1.17364 1.18787 1.15552 1.26863 1.00476 0.91132 1.02446 1.21271 0.87858 1.00063 0.94834 1.68745 1.04632 1.35469 1.10364 1.24043 0.92830 0.95406 0.98430 1.19992 0.88778 0.91239 0.81612 1.86238 1.72382 1.60960 1.17475 1.22327 1.33377 0.91789 1.18327 0.92175 1.25927 0.93894 1.04944 0.92232 1.70894 1.20451 1.22602 1.39618 0.83630 0.76147 0.74566 0.76527 1.20577 1.21278 1.21065 1.24940 1.01030 0.90568 0.98877 1.84155 0.98806 1.11124 1.67757 0.90665 0.90494 0.91283 0.81220 0.88346 0.92279 0.90018 0.91015 0.77999 0.91789 0.91598 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 36.00 0.38 -0.29 16 2 C -0.24 -3.19 6.60 -35.92 -0.24 -3.42 16 3 C 0.03 0.46 11.25 -19.19 -0.22 0.25 16 4 N -0.47 -8.18 10.54 -11.86 -0.13 -8.31 16 5 C 0.07 1.20 6.48 -13.45 -0.09 1.11 16 6 C 0.09 1.61 5.40 -4.97 -0.03 1.58 16 7 N -0.47 -9.84 6.25 -239.69 -1.50 -11.34 16 8 C 0.02 0.46 7.36 -2.76 -0.02 0.44 16 9 C 0.22 5.58 1.08 -90.84 -0.10 5.48 16 10 O -0.56 -14.77 13.45 -35.23 -0.47 -15.25 16 11 C -0.62 -16.48 8.56 -34.44 -0.29 -16.77 16 12 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 13 C 0.04 0.95 5.26 -17.82 -0.09 0.86 16 14 N -0.90 -24.88 12.80 55.43 0.71 -24.17 16 15 Si 1.06 23.59 29.93 -169.99 -5.09 18.50 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.02 -0.56 5.57 -2.77 -0.02 -0.58 16 20 S 0.13 1.94 22.81 -107.50 -2.45 -0.51 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 25 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 27 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.07 1.42 7.74 -51.93 -0.40 1.01 16 29 H 0.37 9.60 6.95 45.56 0.32 9.92 16 30 H 0.27 7.40 5.52 -40.82 -0.23 7.17 16 31 H 0.07 1.49 7.73 -51.93 -0.40 1.08 16 32 H 0.07 1.65 7.79 -51.93 -0.40 1.25 16 LS Contribution 285.14 15.07 4.30 4.30 Total: -1.00 -30.02 285.14 -8.60 -38.62 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.26 Total: 9.50 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -0.71 Total: -11.34 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.91 Total: -43.82 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.47 Total: -15.25 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.09 Total: 18.50 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.45 Total: -0.51 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.02 -8.60 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642834276.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.886 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds