Wall clock time and date at job start Sun Mar 29 2020 23:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33636 * 126.03963 * 2 1 4 4 N 1.31780 * 114.50501 * 179.71601 * 3 2 1 5 5 C 1.29027 * 117.11982 * 0.46435 * 4 3 2 6 6 C 1.50709 * 124.91584 * 179.81440 * 5 4 3 7 7 N 1.46901 * 109.46798 * 89.70108 * 6 5 4 8 8 C 1.47962 * 110.99645 * 170.00157 * 7 6 5 9 9 C 1.53939 * 86.17954 * 222.41370 * 8 7 6 10 10 O 1.42901 * 113.73443 * 269.25769 * 9 8 7 11 11 C 1.50699 * 113.73181 * 138.07765 * 9 8 7 12 12 H 1.07999 * 120.00015 * 4.91121 * 11 9 8 13 13 C 1.37879 * 119.99686 * 184.90847 * 11 9 8 14 14 N 1.31521 * 119.99972 * 13.82310 * 13 11 9 15 15 Si 1.86792 * 119.99875 * 193.81760 * 13 11 9 16 16 H 1.48504 * 109.47216 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47601 * 300.00327 * 15 13 11 18 18 H 1.48506 * 109.47155 * 60.00602 * 15 13 11 19 19 C 1.47957 * 111.00157 * 70.64161 * 7 6 5 20 20 S 1.70975 * 110.17055 * 359.55376 * 5 4 3 21 21 H 1.09001 * 109.47656 * 270.04968 * 1 2 3 22 22 H 1.09007 * 109.46663 * 30.05125 * 1 2 3 23 23 H 1.09000 * 109.46790 * 150.04670 * 1 2 3 24 24 H 1.08006 * 122.74998 * 359.95117 * 3 2 1 25 25 H 1.08996 * 109.47024 * 329.69707 * 6 5 4 26 26 H 1.08995 * 109.46678 * 209.69791 * 6 5 4 27 27 H 1.08999 * 113.76019 * 108.09949 * 8 7 6 28 28 H 1.09000 * 113.75802 * 336.73263 * 8 7 6 29 29 H 0.96693 * 113.99776 * 171.47023 * 10 9 8 30 30 H 0.97001 * 119.99982 * 5.87544 * 14 13 11 31 31 H 1.08994 * 113.76072 * 23.25977 * 19 7 6 32 32 H 1.09001 * 113.75391 * 251.89917 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8171 0.0059 5 6 3.9311 -0.4257 0.0016 6 6 5.3532 -0.9246 0.0031 7 7 5.8141 -1.0856 1.3887 8 6 7.1118 -1.7949 1.4367 9 6 6.5235 -2.5767 2.6251 10 8 6.7817 -1.9738 3.8946 11 6 6.8410 -4.0496 2.5989 12 1 7.4970 -4.4472 1.8386 13 6 6.2942 -4.8897 3.5457 14 7 5.2968 -4.4744 4.2957 15 14 6.9698 -6.6175 3.7629 16 1 6.2149 -7.3129 4.8362 17 1 6.8257 -7.3692 2.4903 18 1 8.4057 -6.5444 4.1348 19 6 5.1417 -2.2304 2.0416 20 16 2.5436 -1.4248 0.0013 21 1 -0.3634 0.0009 1.0276 22 1 -0.3633 0.8896 -0.5147 23 1 -0.3633 -0.8904 -0.5131 24 1 1.9025 2.0875 -0.0008 25 1 5.9910 -0.2055 -0.5108 26 1 5.4018 -1.8850 -0.5099 27 1 7.9524 -1.1550 1.7050 28 1 7.3080 -2.4113 0.5594 29 1 6.3074 -2.3860 4.6295 30 1 4.8898 -3.6103 4.1265 31 1 4.7617 -2.9742 1.3413 32 1 4.4082 -1.9384 2.7931 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642834276.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:09 Heat of formation + Delta-G solvation = 4.782255 kcal Electronic energy + Delta-G solvation = -16620.280682 eV Core-core repulsion = 13900.815861 eV Total energy + Delta-G solvation = -2719.464821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28456 -40.46912 -36.76171 -34.29456 -33.95087 -31.42682 -28.30776 -27.25082 -26.61330 -25.11140 -23.62952 -20.93755 -20.27790 -19.76930 -19.04132 -17.34635 -16.75146 -16.49897 -16.25550 -15.64095 -15.44863 -15.28864 -14.96266 -14.14818 -14.06013 -13.85076 -13.61238 -13.58623 -13.09801 -12.83176 -12.74859 -12.52400 -12.16809 -12.11920 -11.92883 -11.11665 -10.72980 -10.65962 -10.37553 -10.22121 -9.77470 -9.66518 -8.67051 -6.47203 -0.36643 0.30465 0.72350 1.56972 1.61965 1.77333 1.83159 2.53782 2.89442 2.96757 3.10399 3.69476 3.89394 3.94814 4.00841 4.13413 4.21027 4.27130 4.36014 4.49758 4.67466 4.68639 4.82744 4.84924 4.98862 5.11491 5.18457 5.28179 5.78844 6.01439 6.07766 6.45205 6.72568 6.98125 7.30648 8.64189 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.030585 B = 0.005919 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.268979 B = 4729.784200 C = 5177.853106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.217 4.217 3 C 0.010 3.990 4 N -0.486 5.486 5 C 0.038 3.962 6 C 0.094 3.906 7 N -0.477 5.477 8 C 0.030 3.970 9 C 0.197 3.803 10 O -0.575 6.575 11 C -0.635 4.635 12 H 0.059 0.941 13 C -0.007 4.007 14 N -0.919 5.919 15 Si 1.110 2.890 16 H -0.284 1.284 17 H -0.269 1.269 18 H -0.275 1.275 19 C -0.004 4.004 20 S 0.118 5.882 21 H 0.085 0.915 22 H 0.104 0.896 23 H 0.079 0.921 24 H 0.199 0.801 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.368 0.632 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 5.117 -10.086 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.338 4.338 3 C -0.140 4.140 4 N -0.201 5.201 5 C -0.240 4.240 6 C -0.037 4.037 7 N -0.200 5.200 8 C -0.098 4.098 9 C 0.157 3.843 10 O -0.381 6.381 11 C -0.673 4.673 12 H 0.077 0.923 13 C -0.208 4.208 14 N -0.556 5.556 15 Si 0.932 3.068 16 H -0.209 1.209 17 H -0.194 1.194 18 H -0.201 1.201 19 C -0.134 4.134 20 S 0.372 5.628 21 H 0.103 0.897 22 H 0.122 0.878 23 H 0.098 0.902 24 H 0.216 0.784 25 H 0.127 0.873 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.216 0.784 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.959 4.172 -9.296 12.929 hybrid contribution -0.431 1.302 -0.829 1.602 sum -8.390 5.473 -10.125 14.243 Atomic orbital electron populations 1.20399 0.83930 1.04922 1.03985 1.26529 1.03272 0.93929 1.10078 1.22132 0.86306 1.01508 1.04068 1.66215 1.19230 1.19120 1.15511 1.26729 1.00747 0.91671 1.04807 1.21250 0.88736 1.01002 0.92761 1.68644 1.04080 1.34412 1.12894 1.24003 0.93121 0.95168 0.97506 1.20353 0.90870 0.91193 0.81886 1.86222 1.72616 1.61182 1.18109 1.22602 1.33237 0.92928 1.18534 0.92286 1.27179 0.93525 1.08163 0.91897 1.70982 1.21526 1.22522 1.40566 0.83021 0.75842 0.70839 0.77085 1.20926 1.19387 1.20096 1.24574 0.99381 0.91068 0.98349 1.84130 0.98841 1.12180 1.67632 0.89686 0.87788 0.90171 0.78413 0.87262 0.91197 0.89808 0.89274 0.78429 0.92684 0.91786 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.42 71.24 0.74 -0.39 16 2 C -0.22 -5.32 6.60 24.64 0.16 -5.16 16 3 C 0.01 0.27 11.25 83.66 0.94 1.21 16 4 N -0.49 -16.62 10.54 -191.44 -2.02 -18.64 16 5 C 0.04 1.30 6.48 88.52 0.57 1.87 16 6 C 0.09 3.24 5.40 85.56 0.46 3.71 16 7 N -0.48 -19.93 6.25 -915.44 -5.72 -25.65 16 8 C 0.03 1.29 7.36 86.41 0.64 1.92 16 9 C 0.20 9.87 1.08 -10.89 -0.01 9.86 16 10 O -0.57 -30.67 13.45 -148.98 -2.00 -32.67 16 11 C -0.64 -33.71 8.56 25.60 0.22 -33.49 16 12 H 0.06 3.07 7.85 -2.91 -0.02 3.04 16 13 C -0.01 -0.35 5.26 84.65 0.45 0.09 16 14 N -0.92 -51.34 12.80 21.45 0.27 -51.07 16 15 Si 1.11 46.97 29.93 68.60 2.05 49.02 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 19 C 0.00 -0.18 5.57 86.41 0.48 0.30 16 20 S 0.12 3.51 22.81 -56.49 -1.29 2.22 16 21 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.20 4.02 8.06 -2.91 -0.02 3.99 16 25 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 26 H 0.07 2.24 7.69 -2.39 -0.02 2.22 16 27 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.09 3.42 7.74 -2.39 -0.02 3.40 16 29 H 0.37 19.61 6.95 -74.06 -0.52 19.10 16 30 H 0.26 14.69 5.52 -92.71 -0.51 14.18 16 31 H 0.06 2.91 7.73 -2.39 -0.02 2.89 16 32 H 0.05 2.48 7.79 -2.39 -0.02 2.46 16 Total: -1.00 -63.75 285.14 -3.18 -66.93 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.88 Total: 29.94 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.65 Total: -20.08 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -7.47 Total: -95.35 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -2.00 Total: -32.67 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.05 Total: 49.02 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.29 Total: 2.22 kcal Total: -63.75 -3.18 -66.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642834276.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.716 kcal (2) G-P(sol) polarization free energy of solvation -63.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds