Wall clock time and date at job start Sun Mar 29 2020 23:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99828 * 2 1 4 4 H 1.08995 * 109.47742 * 30.00299 * 3 2 1 5 5 C 1.53001 * 109.47098 * 269.99928 * 3 2 1 6 6 C 1.50707 * 109.46885 * 150.00298 * 3 2 1 7 7 O 1.20818 * 119.99963 * 4.99673 * 6 3 2 8 8 O 1.34231 * 119.99882 * 184.99406 * 6 3 2 9 9 C 1.45203 * 116.99784 * 179.97438 * 8 6 3 10 10 H 1.09004 * 109.46809 * 30.00746 * 9 8 6 11 11 C 1.50702 * 109.46511 * 150.00322 * 9 8 6 12 12 H 1.07999 * 119.99675 * 95.16127 * 11 9 8 13 13 C 1.37880 * 120.00158 * 275.14911 * 11 9 8 14 14 N 1.31513 * 120.00054 * 185.48143 * 13 11 9 15 15 Si 1.86797 * 119.99823 * 5.48515 * 13 11 9 16 16 H 1.48502 * 109.47132 * 84.88763 * 15 13 11 17 17 H 1.48497 * 109.47041 * 204.88888 * 15 13 11 18 18 H 1.48501 * 109.47281 * 324.89198 * 15 13 11 19 19 C 1.50693 * 109.47210 * 270.00274 * 9 8 6 20 20 C 1.34519 * 125.78662 * 145.12454 * 19 9 8 21 21 C 1.41390 * 106.83746 * 180.02562 * 20 19 9 22 22 C 1.34509 * 106.84194 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.79082 * 324.81756 * 19 9 8 24 24 H 1.08998 * 109.47235 * 59.99658 * 1 2 3 25 25 H 1.08994 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46734 * 299.99969 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47048 * 60.00534 * 5 3 2 29 29 H 1.09006 * 109.47326 * 300.00048 * 5 3 2 30 30 H 0.96998 * 119.99891 * 179.97438 * 14 13 11 31 31 H 1.07991 * 126.57959 * 0.03909 * 20 19 9 32 32 H 1.07999 * 126.57230 * 179.97438 * 21 20 19 33 33 H 1.07999 * 125.78814 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7880 0.2084 1.0899 8 8 4.0228 2.3993 0.9214 9 6 5.2947 2.2839 1.6123 10 1 5.7404 1.3136 1.3931 11 6 6.2201 3.3785 1.1470 12 1 6.2943 4.2979 1.7088 13 6 6.9721 3.2062 0.0043 14 7 7.8581 4.1139 -0.3430 15 14 6.7324 1.6834 -1.0507 16 1 5.6068 1.9064 -1.9933 17 1 7.9745 1.4124 -1.8181 18 1 6.4253 0.5208 -0.1793 19 6 5.0730 2.4109 3.0974 20 6 5.7572 1.7575 4.0536 21 6 5.2234 2.1726 5.2954 22 6 4.2455 3.0553 5.0237 23 8 4.1627 3.2002 3.6910 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 2.6614 2.7669 -1.4425 28 1 1.2569 1.8014 -1.9563 29 1 2.8830 1.0774 -1.9564 30 1 8.3874 3.9925 -1.1467 31 1 6.5601 1.0514 3.9020 32 1 5.5403 1.8440 6.2742 33 1 3.6339 3.5648 5.7535 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345980971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:18 Heat of formation + Delta-G solvation = -112.816554 kcal Electronic energy + Delta-G solvation = -19314.030497 eV Core-core repulsion = 16114.420586 eV Total energy + Delta-G solvation = -3199.609910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.84127 -39.74677 -37.76684 -35.57729 -33.18335 -32.29887 -31.63885 -30.32397 -27.14742 -26.79582 -24.35379 -22.74807 -21.13410 -20.40882 -19.47881 -17.59891 -17.34750 -16.69068 -16.40558 -16.00966 -15.21670 -15.19099 -14.88244 -14.43993 -13.88848 -13.27356 -13.01513 -12.68562 -12.37188 -12.35554 -12.12448 -12.04132 -11.77996 -11.66813 -11.32284 -11.03701 -10.99171 -10.10706 -9.95561 -9.74567 -9.73531 -9.47399 -9.24603 -8.97485 -7.74828 -6.52150 -4.61809 2.41567 2.87751 2.97410 3.16124 3.20827 3.27559 3.33928 3.73785 4.10027 4.19329 4.85627 5.01588 5.11385 5.27042 5.31104 5.35026 5.53741 5.58953 5.63795 5.76313 5.79757 5.94282 6.24620 6.28403 6.43307 6.55925 6.73415 7.05386 7.09831 7.13820 7.41051 7.88006 8.03799 8.56833 8.63428 9.03845 10.55945 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.010868 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.695768 B = 2575.865188 C = 4021.558128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.089 3.911 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.445 3.555 7 O -0.505 6.505 8 O -0.352 6.352 9 C 0.246 3.754 10 H 0.088 0.912 11 C -0.503 4.503 12 H 0.091 0.909 13 C 0.094 3.906 14 N -0.857 5.857 15 Si 0.862 3.138 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.251 1.251 19 C 0.031 3.969 20 C -0.225 4.225 21 C -0.210 4.210 22 C -0.072 4.072 23 O -0.169 6.169 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.276 0.724 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -3.868 1.968 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.030 3.970 4 H 0.112 0.888 5 C -0.227 4.227 6 C 0.286 3.714 7 O -0.393 6.393 8 O -0.270 6.270 9 C 0.195 3.805 10 H 0.105 0.895 11 C -0.538 4.538 12 H 0.109 0.891 13 C -0.115 4.115 14 N -0.491 5.491 15 Si 0.687 3.313 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.176 1.176 19 C -0.020 4.020 20 C -0.245 4.245 21 C -0.229 4.229 22 C -0.139 4.139 23 O -0.064 6.064 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.092 -4.073 1.821 11.956 hybrid contribution -0.068 -0.596 -0.274 0.660 sum -11.160 -4.669 1.547 12.196 Atomic orbital electron populations 1.22858 0.80787 1.02961 1.00063 1.88021 1.19549 1.25764 1.94979 1.21612 0.92202 0.86176 0.96988 0.88806 1.22208 1.02935 1.03350 0.94182 1.23390 0.86669 0.84059 0.77258 1.90591 1.68648 1.32032 1.48072 1.87147 1.36180 1.33917 1.69727 1.19910 0.79758 1.00981 0.79874 0.89490 1.20826 1.18053 1.03466 1.11469 0.89100 1.25078 0.93330 0.96715 0.96421 1.69858 1.20603 1.34192 1.24463 0.87037 0.78948 0.83735 0.81586 1.18745 1.20198 1.17555 1.23227 0.90672 0.91998 0.96126 1.21395 1.05138 1.06426 0.91506 1.21682 1.00091 1.02354 0.98823 1.23831 1.03351 1.03947 0.82791 1.84067 1.49528 1.53816 1.19033 0.93814 0.89313 0.93848 0.89539 0.91359 0.91424 0.91367 0.83899 0.84150 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.43 16 2 O -0.36 -6.15 9.89 -55.14 -0.55 -6.69 16 3 C 0.09 1.53 3.24 -27.88 -0.09 1.44 16 4 H 0.09 1.35 7.79 -51.93 -0.40 0.94 16 5 C -0.17 -2.55 9.50 37.16 0.35 -2.20 16 6 C 0.44 9.91 7.25 36.01 0.26 10.17 16 7 O -0.51 -12.62 15.72 -25.46 -0.40 -13.02 16 8 O -0.35 -8.47 9.44 -42.03 -0.40 -8.86 16 9 C 0.25 6.25 1.74 -29.04 -0.05 6.20 16 10 H 0.09 2.29 4.77 -51.93 -0.25 2.04 16 11 C -0.50 -14.00 9.23 -34.44 -0.32 -14.32 16 12 H 0.09 2.73 8.05 -52.49 -0.42 2.31 16 13 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 14 N -0.86 -24.38 13.96 55.43 0.77 -23.61 16 15 Si 0.86 20.88 27.34 -169.99 -4.65 16.23 16 16 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.25 -6.20 6.14 56.52 0.35 -5.86 16 19 C 0.03 0.73 6.17 -35.63 -0.22 0.51 16 20 C -0.23 -4.82 10.81 -39.70 -0.43 -5.25 16 21 C -0.21 -3.78 10.91 -39.70 -0.43 -4.21 16 22 C -0.07 -1.26 12.09 29.41 0.36 -0.91 16 23 O -0.17 -3.73 10.63 2.11 0.02 -3.70 16 24 H 0.04 0.40 7.87 -51.93 -0.41 -0.01 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 32 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 295.90 15.07 4.46 4.46 Total: -1.00 -32.52 295.90 -4.35 -36.87 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.04 Total: 2.98 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 0.42 Total: -4.65 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.77 Total: -23.61 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.32 Total: -32.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.65 Total: 16.23 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.52 -4.35 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345980971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.950 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds