Wall clock time and date at job start Sun Mar 29 2020 23:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99828 * 2 1 4 4 H 1.08995 * 109.47742 * 30.00299 * 3 2 1 5 5 C 1.53001 * 109.47098 * 269.99928 * 3 2 1 6 6 C 1.50707 * 109.46885 * 150.00298 * 3 2 1 7 7 O 1.20818 * 119.99963 * 4.99673 * 6 3 2 8 8 O 1.34231 * 119.99882 * 184.99406 * 6 3 2 9 9 C 1.45203 * 116.99784 * 179.97438 * 8 6 3 10 10 H 1.09004 * 109.46809 * 30.00746 * 9 8 6 11 11 C 1.50702 * 109.46511 * 150.00322 * 9 8 6 12 12 H 1.07999 * 119.99675 * 95.16127 * 11 9 8 13 13 C 1.37880 * 120.00158 * 275.14911 * 11 9 8 14 14 N 1.31513 * 120.00054 * 185.48143 * 13 11 9 15 15 Si 1.86797 * 119.99823 * 5.48515 * 13 11 9 16 16 H 1.48502 * 109.47132 * 84.88763 * 15 13 11 17 17 H 1.48497 * 109.47041 * 204.88888 * 15 13 11 18 18 H 1.48501 * 109.47281 * 324.89198 * 15 13 11 19 19 C 1.50693 * 109.47210 * 270.00274 * 9 8 6 20 20 C 1.34519 * 125.78662 * 145.12454 * 19 9 8 21 21 C 1.41390 * 106.83746 * 180.02562 * 20 19 9 22 22 C 1.34509 * 106.84194 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.79082 * 324.81756 * 19 9 8 24 24 H 1.08998 * 109.47235 * 59.99658 * 1 2 3 25 25 H 1.08994 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46734 * 299.99969 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47048 * 60.00534 * 5 3 2 29 29 H 1.09006 * 109.47326 * 300.00048 * 5 3 2 30 30 H 0.96998 * 119.99891 * 179.97438 * 14 13 11 31 31 H 1.07991 * 126.57959 * 0.03909 * 20 19 9 32 32 H 1.07999 * 126.57230 * 179.97438 * 21 20 19 33 33 H 1.07999 * 125.78814 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7880 0.2084 1.0899 8 8 4.0228 2.3993 0.9214 9 6 5.2947 2.2839 1.6123 10 1 5.7404 1.3136 1.3931 11 6 6.2201 3.3785 1.1470 12 1 6.2943 4.2979 1.7088 13 6 6.9721 3.2062 0.0043 14 7 7.8581 4.1139 -0.3430 15 14 6.7324 1.6834 -1.0507 16 1 5.6068 1.9064 -1.9933 17 1 7.9745 1.4124 -1.8181 18 1 6.4253 0.5208 -0.1793 19 6 5.0730 2.4109 3.0974 20 6 5.7572 1.7575 4.0536 21 6 5.2234 2.1726 5.2954 22 6 4.2455 3.0553 5.0237 23 8 4.1627 3.2002 3.6910 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 2.6614 2.7669 -1.4425 28 1 1.2569 1.8014 -1.9563 29 1 2.8830 1.0774 -1.9564 30 1 8.3874 3.9925 -1.1467 31 1 6.5601 1.0514 3.9020 32 1 5.5403 1.8440 6.2742 33 1 3.6339 3.5648 5.7535 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345980971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:17 Heat of formation + Delta-G solvation = -134.327102 kcal Electronic energy + Delta-G solvation = -19314.963264 eV Core-core repulsion = 16114.420586 eV Total energy + Delta-G solvation = -3200.542678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.44134 -41.46794 -39.09564 -37.42064 -35.22098 -33.93626 -33.04872 -31.97290 -28.94573 -27.75025 -25.89046 -24.51083 -22.69403 -21.99927 -21.14996 -19.61348 -18.95526 -18.34732 -17.90983 -17.57900 -16.82848 -16.67652 -16.47610 -16.01582 -15.35132 -15.05348 -14.47740 -14.22476 -14.02936 -13.70697 -13.64573 -13.43708 -13.32255 -13.27612 -12.90841 -12.80013 -12.24020 -12.03220 -11.83340 -11.63316 -11.45154 -11.08576 -10.82157 -10.75551 -9.35860 -8.63789 -6.78946 0.81621 1.14302 1.17357 1.22718 1.31279 1.51813 1.77812 2.07877 2.19578 2.74008 3.04452 3.63684 3.81385 3.88114 4.04332 4.14359 4.23505 4.35584 4.45362 4.53135 4.61839 4.72821 4.82700 4.89808 4.99319 5.04029 5.11554 5.19391 5.56195 5.68092 5.95797 5.98568 6.27689 6.33737 6.84378 6.90467 8.49347 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.010868 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.695768 B = 2575.865188 C = 4021.558128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.395 6.395 3 C 0.097 3.903 4 H 0.125 0.875 5 C -0.166 4.166 6 C 0.435 3.565 7 O -0.539 6.539 8 O -0.359 6.359 9 C 0.255 3.745 10 H 0.071 0.929 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.911 3.089 16 H -0.248 1.248 17 H -0.258 1.258 18 H -0.264 1.264 19 C -0.020 4.020 20 C -0.230 4.230 21 C -0.216 4.216 22 C -0.055 4.055 23 O -0.189 6.189 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.284 0.716 31 H 0.146 0.854 32 H 0.181 0.819 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.624 -4.484 2.401 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.314 6.314 3 C 0.038 3.962 4 H 0.143 0.857 5 C -0.224 4.224 6 C 0.279 3.721 7 O -0.429 6.429 8 O -0.276 6.276 9 C 0.203 3.797 10 H 0.089 0.911 11 C -0.555 4.555 12 H 0.072 0.928 13 C -0.149 4.149 14 N -0.531 5.531 15 Si 0.734 3.266 16 H -0.172 1.172 17 H -0.182 1.182 18 H -0.189 1.189 19 C -0.070 4.070 20 C -0.249 4.249 21 C -0.234 4.234 22 C -0.121 4.121 23 O -0.086 6.086 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.198 0.802 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.391 -4.680 2.242 14.361 hybrid contribution 0.513 -0.425 -0.240 0.708 sum -12.878 -5.105 2.002 13.997 Atomic orbital electron populations 1.23195 0.77754 1.04687 1.01882 1.87984 1.22773 1.25492 1.95168 1.21667 0.89478 0.87401 0.97620 0.85740 1.22236 1.04967 1.02224 0.92927 1.24531 0.88174 0.82732 0.76664 1.90561 1.69861 1.32915 1.49568 1.87017 1.35696 1.35013 1.69850 1.19426 0.79872 0.98891 0.81463 0.91121 1.20789 1.20028 1.02935 1.11705 0.92805 1.25677 0.92897 0.99121 0.97195 1.69925 1.21717 1.35947 1.25520 0.86278 0.80071 0.80034 0.80258 1.17235 1.18208 1.18922 1.22979 0.93364 0.94921 0.95754 1.21780 1.04547 1.05687 0.92933 1.22113 0.99883 1.02306 0.99133 1.24974 1.02865 1.02693 0.81607 1.84024 1.49444 1.53894 1.21222 0.91269 0.87773 0.92681 0.90221 0.87037 0.93037 0.90657 0.83599 0.80158 0.73630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.39 -12.46 9.89 -129.95 -1.28 -13.75 16 3 C 0.10 3.14 3.24 29.85 0.10 3.24 16 4 H 0.13 3.21 7.79 -2.39 -0.02 3.19 16 5 C -0.17 -4.62 9.50 71.98 0.68 -3.94 16 6 C 0.44 19.40 7.25 71.24 0.52 19.91 16 7 O -0.54 -27.34 15.72 28.41 0.45 -26.89 16 8 O -0.36 -17.57 9.44 -48.78 -0.46 -18.03 16 9 C 0.26 13.47 1.74 29.10 0.05 13.52 16 10 H 0.07 3.90 4.77 -2.38 -0.01 3.89 16 11 C -0.52 -30.32 9.23 25.60 0.24 -30.08 16 12 H 0.05 3.45 8.05 -2.91 -0.02 3.43 16 13 C 0.06 3.25 5.47 84.66 0.46 3.72 16 14 N -0.90 -52.54 13.96 21.45 0.30 -52.24 16 15 Si 0.91 43.89 27.34 68.60 1.88 45.76 16 16 H -0.25 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.26 -13.21 6.14 99.48 0.61 -12.60 16 19 C -0.02 -0.95 6.17 24.83 0.15 -0.80 16 20 C -0.23 -9.86 10.81 22.19 0.24 -9.62 16 21 C -0.22 -7.24 10.91 22.19 0.24 -7.00 16 22 C -0.05 -1.79 12.09 66.97 0.81 -0.98 16 23 O -0.19 -8.29 10.63 0.85 0.01 -8.28 16 24 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 0.92 8.09 -2.38 -0.02 0.90 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.11 2.12 7.87 -2.39 -0.02 2.10 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.15 5.95 8.06 -2.92 -0.02 5.92 16 32 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.25 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -74.78 295.90 6.62 -68.16 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.01 Total: 15.69 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.72 Total: -10.43 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.30 Total: -52.24 kcal Atomic # 8 Polarization: -65.66 SS G_CDS: -1.29 Total: -66.95 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.76 kcal Total: -74.78 6.62 -68.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345980971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.165 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds