Wall clock time and date at job start Sun Mar 29 2020 23:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48496 * 109.47320 * 270.26985 * 3 2 1 5 5 H 1.48499 * 109.46770 * 30.26696 * 3 2 1 6 6 H 1.48502 * 109.47346 * 150.26559 * 3 2 1 7 7 C 1.37878 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00359 * 351.31622 * 7 2 1 9 9 C 1.50713 * 119.99646 * 171.31239 * 7 2 1 10 10 H 1.09000 * 109.46842 * 355.46620 * 9 7 2 11 11 O 1.42900 * 109.46938 * 235.46432 * 9 7 2 12 12 C 1.35895 * 117.00259 * 84.68803 * 11 9 7 13 13 C 1.38729 * 120.05869 * 174.73273 * 12 11 9 14 14 C 1.38144 * 119.94426 * 179.74298 * 13 12 11 15 15 C 1.38266 * 120.05530 * 0.50664 * 14 13 12 16 16 C 1.38267 * 120.11113 * 359.76631 * 15 14 13 17 17 C 1.38145 * 120.05605 * 359.97438 * 16 15 14 18 18 C 1.50700 * 109.46743 * 115.46187 * 9 7 2 19 19 C 1.38235 * 119.99817 * 82.91859 * 18 9 7 20 20 C 1.38233 * 119.99876 * 179.78684 * 19 18 9 21 21 C 1.38234 * 120.00143 * 0.43621 * 20 19 18 22 22 C 1.38237 * 119.99760 * 359.82090 * 21 20 19 23 23 C 1.38229 * 120.00280 * 263.19268 * 18 9 7 24 24 H 0.96995 * 119.99658 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.02832 * 359.97438 * 13 12 11 26 26 H 1.08003 * 119.97167 * 180.23033 * 14 13 12 27 27 H 1.08002 * 119.94295 * 179.74786 * 15 14 13 28 28 H 1.08000 * 119.96682 * 179.97438 * 16 15 14 29 29 H 1.07994 * 120.02438 * 179.97438 * 17 16 15 30 30 H 1.08004 * 120.00242 * 359.97438 * 19 18 9 31 31 H 1.08000 * 119.99937 * 180.27566 * 20 19 18 32 32 H 1.07997 * 120.00089 * 179.83242 * 21 20 19 33 33 H 1.07999 * 119.99979 * 179.97438 * 22 21 20 34 34 H 1.08006 * 119.99649 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4910 2.0497 -1.4000 5 1 1.4495 2.6510 0.7057 6 1 3.5496 1.4385 0.6944 7 6 2.0045 -1.1941 -0.0005 8 1 1.4737 -2.1241 0.1403 9 6 3.4986 -1.2015 -0.1977 10 1 3.8431 -0.1878 -0.4024 11 8 3.8294 -2.0488 -1.2998 12 6 3.7692 -1.4985 -2.5409 13 6 4.1817 -2.2292 -3.6457 14 6 4.1145 -1.6694 -4.9069 15 6 3.6464 -0.3783 -5.0674 16 6 3.2400 0.3540 -3.9673 17 6 3.3003 -0.2031 -2.7046 18 6 4.1674 -1.7168 1.0506 19 6 4.2806 -3.0781 1.2624 20 6 4.8979 -3.5507 2.4054 21 6 5.3941 -2.6621 3.3408 22 6 5.2762 -1.3008 3.1315 23 6 4.6626 -0.8282 1.9865 24 1 -0.4849 0.8400 0.0004 25 1 4.5515 -3.2361 -3.5204 26 1 4.4320 -2.2391 -5.7677 27 1 3.5985 0.0590 -6.0538 28 1 2.8752 1.3624 -4.0953 29 1 2.9831 0.3694 -1.8456 30 1 3.8894 -3.7724 0.5335 31 1 4.9903 -4.6143 2.5687 32 1 5.8740 -3.0314 4.2350 33 1 5.6634 -0.6065 3.8625 34 1 4.5705 0.2354 1.8229 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000404992.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:07 Heat of formation + Delta-G solvation = 17.710254 kcal Electronic energy + Delta-G solvation = -18132.346707 eV Core-core repulsion = 15381.538879 eV Total energy + Delta-G solvation = -2750.807829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51620 -38.41809 -36.51188 -33.15703 -31.44446 -30.39094 -30.31707 -28.96915 -27.39276 -23.36512 -22.22045 -22.09057 -21.40796 -20.00877 -17.73109 -17.18408 -16.43497 -15.46162 -15.12766 -14.98683 -14.33866 -13.99756 -13.72972 -13.42454 -13.10996 -12.94865 -12.80477 -12.67508 -12.26705 -11.73554 -11.48654 -11.32348 -11.16184 -10.71657 -10.58681 -10.20390 -9.97704 -9.80284 -9.44867 -8.91651 -8.42062 -8.34042 -8.02297 -7.38262 -6.42822 -4.45216 1.92337 1.96508 2.00377 2.10807 2.98572 3.05773 3.11873 4.04364 4.09998 4.41244 4.47250 4.95364 5.41166 5.43262 5.45365 5.46847 5.57818 5.67351 5.86797 5.95619 6.00089 6.09048 6.16584 6.24185 6.31582 6.55937 6.59236 6.66251 6.92176 7.01607 7.03414 7.07181 7.13649 7.20972 7.29849 7.47498 7.60251 8.09174 8.38202 8.72328 9.16664 10.68949 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.009011 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.814823 B = 3106.395118 C = 4069.302599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.087 3.913 3 Si 0.850 3.150 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.529 4.529 8 H 0.087 0.913 9 C 0.208 3.792 10 H 0.045 0.955 11 O -0.320 6.320 12 C 0.168 3.832 13 C -0.173 4.173 14 C -0.088 4.088 15 C -0.179 4.179 16 C -0.085 4.085 17 C -0.206 4.206 18 C -0.035 4.035 19 C -0.102 4.102 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.127 4.127 24 H 0.271 0.729 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -0.857 -1.831 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.120 4.120 3 Si 0.676 3.324 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.566 4.566 8 H 0.105 0.895 9 C 0.154 3.846 10 H 0.062 0.938 11 O -0.234 6.234 12 C 0.120 3.880 13 C -0.192 4.192 14 C -0.107 4.107 15 C -0.198 4.198 16 C -0.103 4.103 17 C -0.224 4.224 18 C -0.036 4.036 19 C -0.120 4.120 20 C -0.143 4.143 21 C -0.161 4.161 22 C -0.140 4.140 23 C -0.145 4.145 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.211 -0.942 -1.740 9.421 hybrid contribution -0.025 1.189 0.175 1.202 sum 9.186 0.247 -1.565 9.322 Atomic orbital electron populations 1.69869 1.06176 1.27665 1.46551 1.25046 0.94798 0.98693 0.93431 0.87485 0.81094 0.84429 0.79355 1.18597 1.20423 1.17949 1.21185 0.88528 0.95905 1.50972 0.89497 1.19419 0.95496 0.89390 0.80317 0.93753 1.86043 1.82570 1.42394 1.12350 1.18971 0.91998 0.91190 0.85812 1.20395 1.07182 1.00737 0.90866 1.20773 0.98794 0.95148 0.95943 1.20830 1.05301 0.95542 0.98100 1.20893 0.97821 0.99252 0.92323 1.21737 1.05158 0.96478 0.99060 1.19990 0.93441 0.93689 0.96472 1.20964 0.98537 0.95369 0.97123 1.21059 0.99496 0.98997 0.94721 1.20928 1.02347 0.93485 0.99356 1.20939 1.00355 0.95440 0.97282 1.21003 0.99125 0.99593 0.94763 0.91834 0.85960 0.86356 0.86893 0.86849 0.84912 0.85922 0.86820 0.87016 0.86812 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.13 13.96 55.43 0.77 -24.36 16 2 C 0.09 2.37 5.22 -17.82 -0.09 2.27 16 3 Si 0.85 19.70 24.71 -169.99 -4.20 15.50 16 4 H -0.26 -5.76 6.41 56.52 0.36 -5.40 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.25 -5.52 4.99 56.52 0.28 -5.24 16 7 C -0.53 -14.48 8.66 -34.43 -0.30 -14.78 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 C 0.21 4.97 1.89 -29.03 -0.05 4.92 16 10 H 0.04 1.06 3.61 -51.93 -0.19 0.87 16 11 O -0.32 -7.48 9.01 -19.41 -0.17 -7.65 16 12 C 0.17 3.67 6.59 -39.22 -0.26 3.41 16 13 C -0.17 -3.20 9.99 -39.43 -0.39 -3.59 16 14 C -0.09 -1.42 10.04 -39.61 -0.40 -1.82 16 15 C -0.18 -2.94 10.04 -39.56 -0.40 -3.34 16 16 C -0.08 -1.60 10.04 -39.61 -0.40 -2.00 16 17 C -0.21 -4.55 8.71 -39.43 -0.34 -4.90 16 18 C -0.04 -0.77 4.97 -104.63 -0.52 -1.29 16 19 C -0.10 -2.03 9.35 -39.58 -0.37 -2.40 16 20 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 21 C -0.14 -2.27 10.05 -39.58 -0.40 -2.66 16 22 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 23 C -0.13 -2.52 9.67 -39.59 -0.38 -2.91 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 26 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.13 3.12 1.34 -52.49 -0.07 3.05 16 30 H 0.12 2.44 7.69 -52.48 -0.40 2.03 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.12 2.30 6.32 -52.48 -0.33 1.97 16 LS Contribution 283.25 15.07 4.27 4.27 Total: -1.00 -29.18 283.25 -8.10 -37.29 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.67 Total: 8.99 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: -5.10 Total: -34.04 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.77 Total: -24.36 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.17 Total: -7.65 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.20 Total: 15.50 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.18 -8.10 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000404992.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.998 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds