Wall clock time and date at job start Sun Mar 29 2020 22:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76198 * 100.00017 * 2 1 4 4 N 1.32552 * 119.18639 * 359.97438 * 3 2 1 5 5 C 1.32469 * 120.92835 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.29912 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.75269 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47286 * 259.99700 * 7 6 5 9 9 C 1.46496 * 120.00095 * 270.00055 * 8 7 6 10 10 C 1.36943 * 119.99586 * 90.00094 * 8 7 6 11 11 H 1.07995 * 120.00196 * 22.08620 * 10 8 7 12 12 C 1.38814 * 119.99444 * 202.08920 * 10 8 7 13 13 N 1.31616 * 120.00296 * 14.99175 * 12 10 8 14 14 Si 1.86800 * 119.99621 * 194.99404 * 12 10 8 15 15 H 1.48503 * 109.47239 * 89.99896 * 14 12 10 16 16 H 1.48503 * 109.47005 * 209.99684 * 14 12 10 17 17 H 1.48494 * 109.47298 * 330.00017 * 14 12 10 18 18 C 1.39664 * 118.49941 * 0.26571 * 6 5 4 19 19 N 1.38526 * 120.48332 * 179.72671 * 18 6 5 20 20 N 1.32513 * 119.18259 * 179.97438 * 3 2 1 21 21 H 1.08991 * 109.46915 * 300.00266 * 1 2 3 22 22 H 1.09008 * 109.46731 * 60.00083 * 1 2 3 23 23 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.34867 * 179.97438 * 5 4 3 25 25 H 1.08999 * 109.47190 * 139.99776 * 7 6 5 26 26 H 1.09005 * 109.47183 * 20.00069 * 7 6 5 27 27 H 1.08995 * 109.47039 * 89.65023 * 9 8 7 28 28 H 1.09002 * 109.46955 * 209.65333 * 9 8 7 29 29 H 1.08997 * 109.46982 * 329.64857 * 9 8 7 30 30 H 0.97003 * 120.00094 * 180.02562 * 13 12 10 31 31 H 0.97002 * 120.00327 * 0.02562 * 19 18 6 32 32 H 0.96996 * 120.00358 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0886 2.5727 -0.0005 5 6 1.2788 3.8837 0.0000 6 6 2.5682 4.3797 0.0005 7 6 2.8224 5.8650 0.0005 8 7 3.1418 6.3058 -1.3596 9 6 4.5330 6.3154 -1.8188 10 6 2.1400 6.7088 -2.2018 11 1 1.1965 7.0441 -1.7971 12 6 2.3372 6.6862 -3.5756 13 7 3.3484 6.0148 -4.0844 14 14 1.1672 7.6089 -4.7023 15 1 1.6633 8.9940 -4.9039 16 1 1.0915 6.9146 -6.0129 17 1 -0.1831 7.6516 -4.0859 18 6 3.6308 3.4734 -0.0052 19 7 4.9401 3.9257 -0.0106 20 7 3.3675 2.1706 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 0.4349 4.5576 -0.0009 25 1 3.6593 6.0904 0.6614 26 1 1.9316 6.3861 0.3516 27 1 4.7752 5.3506 -2.2643 28 1 4.6649 7.1022 -2.5615 29 1 5.1937 6.5007 -0.9719 30 1 3.4864 5.9994 -5.0445 31 1 5.1243 4.8781 -0.0101 32 1 5.6728 3.2901 -0.0149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140251115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:49 Heat of formation + Delta-G solvation = 71.400171 kcal Electronic energy + Delta-G solvation = -16807.354498 eV Core-core repulsion = 14123.071197 eV Total energy + Delta-G solvation = -2684.283300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24646 -36.15815 -34.78066 -32.64733 -31.15960 -30.17865 -28.66025 -26.33608 -25.95653 -23.20662 -22.97070 -20.72036 -18.27007 -17.79665 -16.72714 -15.68889 -15.13019 -14.99109 -14.70297 -14.24016 -13.92764 -13.61212 -13.37194 -13.10689 -12.97897 -12.44897 -12.06305 -11.42905 -11.29780 -10.98807 -10.80326 -10.66603 -10.55819 -10.20149 -10.11638 -9.93131 -9.63889 -8.69835 -8.64333 -8.07274 -7.31122 -6.87933 -5.86696 -3.28195 1.52374 1.61793 1.97430 2.43805 3.32591 3.39102 3.40621 3.90046 4.32621 4.46597 4.96957 5.26900 5.31665 5.36151 5.38365 5.53643 5.57999 5.76771 5.95614 5.99899 6.38233 6.46555 6.58259 6.83074 7.14847 7.31886 7.53136 7.68309 7.70399 8.05682 8.25655 8.65441 9.08658 9.71117 10.18810 11.19367 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.006748 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.396992 B = 4148.610054 C = 4733.570270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.030 6.030 3 C 0.318 3.682 4 N -0.565 5.565 5 C 0.179 3.821 6 C -0.241 4.241 7 C 0.194 3.806 8 N -0.588 5.588 9 C 0.157 3.843 10 C -0.257 4.257 11 H 0.072 0.928 12 C 0.004 3.996 13 N -0.901 5.901 14 Si 0.907 3.093 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.457 3.543 19 N -0.833 5.833 20 N -0.567 5.567 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.160 0.840 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.056 0.944 29 H -0.005 1.005 30 H 0.254 0.746 31 H 0.412 0.588 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 -6.089 9.228 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.201 5.799 3 C -0.060 4.060 4 N -0.287 5.287 5 C 0.015 3.985 6 C -0.257 4.257 7 C 0.065 3.935 8 N -0.309 5.309 9 C 0.013 3.987 10 C -0.386 4.386 11 H 0.090 0.910 12 C -0.195 4.195 13 N -0.544 5.544 14 Si 0.736 3.264 15 H -0.213 1.213 16 H -0.218 1.218 17 H -0.203 1.203 18 C 0.208 3.792 19 N -0.379 5.379 20 N -0.295 5.295 21 H 0.106 0.894 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.178 0.822 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.013 0.987 30 H 0.064 0.936 31 H 0.247 0.753 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.461 -7.968 9.024 12.048 hybrid contribution -0.841 2.448 -1.019 2.782 sum -1.303 -5.520 8.005 9.811 Atomic orbital electron populations 1.23435 0.94478 1.05420 1.07153 1.85404 1.06563 0.95795 1.92092 1.24045 0.86473 0.99326 0.96197 1.68576 1.33761 1.04558 1.21802 1.22556 0.95829 0.90339 0.89736 1.22162 0.93596 1.00861 1.09039 1.19707 0.99110 0.86355 0.88300 1.44213 1.03588 1.73050 1.10069 1.20917 0.82387 1.01103 0.94327 1.19239 0.96110 1.36173 0.87128 0.90979 1.25063 0.98255 0.99031 0.97180 1.70072 1.31365 1.41523 1.11464 0.86221 0.80498 0.79414 0.80229 1.21319 1.21754 1.20323 1.18206 0.86493 0.87954 0.86575 1.42325 1.03216 1.10938 1.81426 1.67781 1.22138 1.14812 1.24739 0.89403 0.89260 0.88378 0.82237 0.93666 0.92052 0.95387 0.92573 0.98691 0.93565 0.75316 0.77209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.62 101.05 0.97 -0.68 16 2 S -0.03 -0.47 22.89 -107.50 -2.46 -2.93 16 3 C 0.32 6.22 7.85 -90.88 -0.71 5.51 16 4 N -0.56 -10.98 9.13 -13.53 -0.12 -11.10 16 5 C 0.18 3.48 10.94 -17.31 -0.19 3.29 16 6 C -0.24 -4.79 5.51 -104.13 -0.57 -5.37 16 7 C 0.19 3.74 5.42 -5.20 -0.03 3.71 16 8 N -0.59 -13.83 2.91 -182.51 -0.53 -14.36 16 9 C 0.16 3.58 7.59 59.84 0.45 4.04 16 10 C -0.26 -6.74 9.65 -15.06 -0.15 -6.89 16 11 H 0.07 1.84 7.86 -52.49 -0.41 1.42 16 12 C 0.00 0.11 5.02 -17.43 -0.09 0.02 16 13 N -0.90 -25.84 10.81 55.49 0.60 -25.24 16 14 Si 0.91 21.50 29.58 -169.99 -5.03 16.48 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.46 9.01 7.80 -154.85 -1.21 7.80 16 19 N -0.83 -13.63 8.51 31.23 0.27 -13.36 16 20 N -0.57 -11.52 10.43 -12.68 -0.13 -11.66 16 21 H 0.09 1.06 8.11 -51.92 -0.42 0.64 16 22 H 0.09 1.18 8.11 -51.91 -0.42 0.76 16 23 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 24 H 0.16 2.76 8.06 -52.49 -0.42 2.33 16 25 H 0.05 0.76 6.96 -51.93 -0.36 0.40 16 26 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 27 H 0.03 0.70 7.47 -51.93 -0.39 0.31 16 28 H 0.06 1.41 6.96 -51.93 -0.36 1.05 16 29 H -0.01 -0.10 6.72 -51.93 -0.35 -0.45 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.41 6.45 4.61 -40.82 -0.19 6.26 16 32 H 0.40 5.69 8.95 -40.82 -0.37 5.33 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -31.15 283.19 -8.32 -39.47 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -3.66 Total: 7.00 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -1.52 Total: 11.43 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: 0.08 Total: -75.72 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.46 Total: -2.93 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.15 -8.32 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140251115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.868 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds