Wall clock time and date at job start Sun Mar 29 2020 22:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76198 * 100.00017 * 2 1 4 4 N 1.32552 * 119.18639 * 359.97438 * 3 2 1 5 5 C 1.32469 * 120.92835 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.29912 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.75269 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47286 * 259.99700 * 7 6 5 9 9 C 1.46496 * 120.00095 * 270.00055 * 8 7 6 10 10 C 1.36943 * 119.99586 * 90.00094 * 8 7 6 11 11 H 1.07995 * 120.00196 * 22.08620 * 10 8 7 12 12 C 1.38814 * 119.99444 * 202.08920 * 10 8 7 13 13 N 1.31616 * 120.00296 * 14.99175 * 12 10 8 14 14 Si 1.86800 * 119.99621 * 194.99404 * 12 10 8 15 15 H 1.48503 * 109.47239 * 89.99896 * 14 12 10 16 16 H 1.48503 * 109.47005 * 209.99684 * 14 12 10 17 17 H 1.48494 * 109.47298 * 330.00017 * 14 12 10 18 18 C 1.39664 * 118.49941 * 0.26571 * 6 5 4 19 19 N 1.38526 * 120.48332 * 179.72671 * 18 6 5 20 20 N 1.32513 * 119.18259 * 179.97438 * 3 2 1 21 21 H 1.08991 * 109.46915 * 300.00266 * 1 2 3 22 22 H 1.09008 * 109.46731 * 60.00083 * 1 2 3 23 23 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.34867 * 179.97438 * 5 4 3 25 25 H 1.08999 * 109.47190 * 139.99776 * 7 6 5 26 26 H 1.09005 * 109.47183 * 20.00069 * 7 6 5 27 27 H 1.08995 * 109.47039 * 89.65023 * 9 8 7 28 28 H 1.09002 * 109.46955 * 209.65333 * 9 8 7 29 29 H 1.08997 * 109.46982 * 329.64857 * 9 8 7 30 30 H 0.97003 * 120.00094 * 180.02562 * 13 12 10 31 31 H 0.97002 * 120.00327 * 0.02562 * 19 18 6 32 32 H 0.96996 * 120.00358 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0886 2.5727 -0.0005 5 6 1.2788 3.8837 0.0000 6 6 2.5682 4.3797 0.0005 7 6 2.8224 5.8650 0.0005 8 7 3.1418 6.3058 -1.3596 9 6 4.5330 6.3154 -1.8188 10 6 2.1400 6.7088 -2.2018 11 1 1.1965 7.0441 -1.7971 12 6 2.3372 6.6862 -3.5756 13 7 3.3484 6.0148 -4.0844 14 14 1.1672 7.6089 -4.7023 15 1 1.6633 8.9940 -4.9039 16 1 1.0915 6.9146 -6.0129 17 1 -0.1831 7.6516 -4.0859 18 6 3.6308 3.4734 -0.0052 19 7 4.9401 3.9257 -0.0106 20 7 3.3675 2.1706 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 0.4349 4.5576 -0.0009 25 1 3.6593 6.0904 0.6614 26 1 1.9316 6.3861 0.3516 27 1 4.7752 5.3506 -2.2643 28 1 4.6649 7.1022 -2.5615 29 1 5.1937 6.5007 -0.9719 30 1 3.4864 5.9994 -5.0445 31 1 5.1243 4.8781 -0.0101 32 1 5.6728 3.2901 -0.0149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140251115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:48 Heat of formation + Delta-G solvation = 51.077551 kcal Electronic energy + Delta-G solvation = -16808.235753 eV Core-core repulsion = 14123.071197 eV Total energy + Delta-G solvation = -2685.164555 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.71528 -37.83846 -36.30097 -34.30842 -32.84336 -31.74055 -29.72255 -27.98215 -27.78986 -24.78529 -24.52987 -22.42849 -19.66913 -19.26883 -18.61424 -17.13916 -16.75207 -16.49060 -16.23109 -15.71971 -15.43484 -15.25374 -15.07273 -14.41265 -14.25434 -13.85999 -13.44255 -13.17825 -12.86609 -12.73705 -12.56031 -12.32400 -12.12807 -11.95884 -11.88838 -11.41586 -11.14718 -10.63276 -10.18866 -9.43953 -8.87765 -8.54790 -7.87350 -5.30450 0.03276 0.32967 0.48456 1.30867 1.45815 1.46826 1.54625 2.49018 2.51843 2.87807 3.30456 3.55296 3.81284 3.88473 4.10937 4.26478 4.39644 4.42448 4.52792 4.74391 4.92105 5.00742 5.08732 5.27529 5.40178 5.61069 5.71355 5.86707 6.27996 6.31551 6.69541 7.12066 7.21284 7.83290 8.25134 9.16993 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.006748 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.396992 B = 4148.610054 C = 4733.570270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.022 6.022 3 C 0.301 3.699 4 N -0.571 5.571 5 C 0.172 3.828 6 C -0.259 4.259 7 C 0.196 3.804 8 N -0.603 5.603 9 C 0.171 3.829 10 C -0.254 4.254 11 H 0.078 0.922 12 C -0.053 4.053 13 N -0.936 5.936 14 Si 0.963 3.037 15 H -0.284 1.284 16 H -0.304 1.304 17 H -0.266 1.266 18 C 0.445 3.555 19 N -0.819 5.819 20 N -0.586 5.586 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.135 0.865 24 H 0.177 0.823 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.000 1.000 28 H 0.024 0.976 29 H 0.038 0.962 30 H 0.245 0.755 31 H 0.416 0.584 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -6.432 10.486 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.209 5.791 3 C -0.077 4.077 4 N -0.294 5.294 5 C 0.009 3.991 6 C -0.274 4.274 7 C 0.069 3.931 8 N -0.324 5.324 9 C 0.026 3.974 10 C -0.385 4.385 11 H 0.096 0.904 12 C -0.248 4.248 13 N -0.582 5.582 14 Si 0.792 3.208 15 H -0.211 1.211 16 H -0.231 1.231 17 H -0.191 1.191 18 C 0.195 3.805 19 N -0.365 5.365 20 N -0.315 5.315 21 H 0.109 0.891 22 H 0.098 0.902 23 H 0.153 0.847 24 H 0.194 0.806 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.018 0.982 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.251 0.749 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.299 -8.312 10.331 13.323 hybrid contribution -0.605 2.434 -1.262 2.808 sum -1.904 -5.878 9.070 10.974 Atomic orbital electron populations 1.23548 0.91675 1.07672 1.06758 1.85367 1.09595 0.92880 1.91230 1.24873 0.86430 1.01320 0.95096 1.68661 1.33653 1.04580 1.22523 1.22957 0.96442 0.90877 0.88862 1.22184 0.93940 1.00953 1.10369 1.19824 1.00797 0.86093 0.86379 1.44350 1.03248 1.73857 1.10957 1.20665 0.83208 0.98448 0.95054 1.19582 0.96553 1.34798 0.87552 0.90387 1.25738 0.99932 1.00488 0.98681 1.70238 1.33408 1.43766 1.10825 0.85317 0.79384 0.78088 0.77995 1.21096 1.23108 1.19100 1.18506 0.87547 0.88110 0.86312 1.42260 1.02573 1.11412 1.80285 1.67893 1.22662 1.15114 1.25816 0.89128 0.90212 0.84713 0.80599 0.90945 0.90792 0.98190 0.95708 0.94357 0.94603 0.74860 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.62 113.37 1.09 -1.70 16 2 S -0.02 -0.66 22.89 -56.49 -1.29 -1.95 16 3 C 0.30 11.44 7.85 180.44 1.42 12.86 16 4 N -0.57 -21.54 9.13 -196.71 -1.80 -23.34 16 5 C 0.17 6.45 10.94 84.57 0.93 7.38 16 6 C -0.26 -9.95 5.51 -19.55 -0.11 -10.05 16 7 C 0.20 7.16 5.42 85.63 0.46 7.63 16 8 N -0.60 -27.66 2.91 -731.33 -2.13 -29.78 16 9 C 0.17 7.71 7.59 127.77 0.97 8.68 16 10 C -0.25 -13.17 9.65 84.03 0.81 -12.36 16 11 H 0.08 3.86 7.86 -2.91 -0.02 3.84 16 12 C -0.05 -2.90 5.02 84.86 0.43 -2.48 16 13 N -0.94 -54.80 10.81 21.65 0.23 -54.57 16 14 Si 0.96 44.46 29.58 68.60 2.03 46.49 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 C 0.45 17.07 7.80 133.20 1.04 18.11 16 19 N -0.82 -25.65 8.51 -55.12 -0.47 -26.12 16 20 N -0.59 -23.35 10.43 -194.02 -2.02 -25.37 16 21 H 0.09 1.97 8.11 -2.40 -0.02 1.95 16 22 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 23 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.18 5.80 8.06 -2.91 -0.02 5.78 16 25 H 0.07 2.23 6.96 -2.39 -0.02 2.21 16 26 H 0.07 2.50 7.93 -2.38 -0.02 2.49 16 27 H 0.00 -0.01 7.47 -2.39 -0.02 -0.03 16 28 H 0.02 1.24 6.96 -2.39 -0.02 1.22 16 29 H 0.04 1.35 6.72 -2.39 -0.02 1.34 16 30 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.42 12.20 4.61 -92.71 -0.43 11.77 16 32 H 0.41 11.14 8.95 -92.71 -0.83 10.31 16 Total: -1.00 -66.78 283.19 1.49 -65.29 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.10 Total: 21.28 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: 7.04 Total: 28.07 kcal Atomic # 7 Polarization: -153.00 SS G_CDS: -6.18 Total: -159.18 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -1.29 Total: -1.95 kcal Total: -66.78 1.49 -65.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140251115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.365 kcal (2) G-P(sol) polarization free energy of solvation -66.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds