Wall clock time and date at job start Sun Mar 29 2020 23:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48507 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46907 * 299.99683 * 3 2 1 6 6 H 1.48492 * 109.47086 * 59.99942 * 3 2 1 7 7 C 1.40051 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00303 * 179.97438 * 7 2 1 9 9 C 1.46383 * 119.99473 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00011 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99772 * 179.97438 * 9 7 2 12 12 C 1.47670 * 134.45662 * 179.97438 * 11 9 7 13 13 C 1.53497 * 85.97651 * 155.71911 * 12 11 9 14 14 C 1.47669 * 134.45725 * 0.03174 * 11 9 7 15 15 C 1.52818 * 113.50095 * 269.05404 * 13 12 11 16 16 C 1.53354 * 107.98838 * 273.84562 * 15 13 12 17 17 H 1.09002 * 109.54997 * 54.98026 * 16 15 13 18 18 O 1.42896 * 109.50282 * 175.25506 * 16 15 13 19 19 C 1.52796 * 109.01996 * 295.10376 * 16 15 13 20 20 N 1.45678 * 111.10884 * 52.49431 * 19 16 15 21 21 C 1.33783 * 123.77421 * 338.40496 * 20 19 16 22 22 O 1.21285 * 118.92723 * 182.45041 * 21 20 19 23 23 H 0.97001 * 119.99419 * 0.02562 * 1 2 3 24 24 H 1.09000 * 113.78791 * 41.44943 * 12 11 9 25 25 H 1.09007 * 113.89634 * 269.99766 * 12 11 9 26 26 H 1.09008 * 113.78929 * 90.01846 * 14 11 9 27 27 H 1.08997 * 113.79293 * 318.55747 * 14 11 9 28 28 H 1.09004 * 109.75281 * 33.46369 * 15 13 12 29 29 H 1.08996 * 109.75146 * 154.15333 * 15 13 12 30 30 H 0.96698 * 114.00923 * 179.51593 * 18 16 15 31 31 H 1.09002 * 109.14158 * 292.08980 * 19 16 15 32 32 H 1.09002 * 109.14434 * 172.89469 * 19 16 15 33 33 H 0.96997 * 118.11237 * 158.38886 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3963 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4804 -0.0004 11 7 1.9489 -3.6477 0.0005 12 6 1.5531 -5.0704 0.0010 13 6 2.9264 -5.3408 -0.6291 14 6 3.3788 -4.0164 0.0011 15 6 2.9113 -5.3167 -2.1570 16 6 2.5209 -6.7158 -2.6489 17 1 1.5742 -7.0106 -2.1961 18 8 2.3889 -6.7016 -4.0717 19 6 3.6113 -7.7074 -2.2462 20 7 3.9005 -7.6191 -0.8212 21 6 3.6219 -6.5472 -0.0708 22 8 3.9417 -6.5509 1.0992 23 1 -0.4849 0.8401 -0.0004 24 1 0.7148 -5.2938 -0.6588 25 1 1.4352 -5.4956 0.9978 26 1 3.8040 -4.1268 0.9988 27 1 3.9916 -3.4021 -0.6585 28 1 2.1816 -4.5863 -2.5067 29 1 3.9013 -5.0564 -2.5311 30 1 2.1502 -7.5575 -4.4532 31 1 4.5187 -7.4890 -2.8093 32 1 3.2795 -8.7187 -2.4816 33 1 4.3189 -8.3815 -0.3916 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651761852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:31 Heat of formation + Delta-G solvation = -83.767977 kcal Electronic energy + Delta-G solvation = -19227.594365 eV Core-core repulsion = 16061.536847 eV Total energy + Delta-G solvation = -3166.057518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06440 -38.12576 -37.72721 -35.74592 -35.03331 -32.49902 -31.16192 -28.75007 -27.00810 -25.83491 -25.16117 -22.98203 -21.98726 -19.24073 -18.09971 -17.80423 -17.17710 -16.85711 -16.11996 -15.48035 -15.19419 -14.87181 -14.30929 -14.21799 -13.96360 -13.60453 -13.21933 -12.56791 -12.54921 -12.18716 -11.95585 -11.52498 -11.37061 -11.10264 -11.04183 -10.88028 -10.56062 -10.39729 -10.27879 -10.07818 -9.65985 -9.20170 -8.87974 -7.67821 -7.32114 -6.21946 -4.66458 2.58181 3.10059 3.13293 3.21097 3.25998 3.84292 4.01065 4.26095 4.36924 4.45234 4.54551 4.77064 4.86655 4.93389 5.15217 5.27039 5.43205 5.61816 5.76772 5.98705 6.06957 6.08158 6.15024 6.22956 6.51539 6.65746 6.71856 7.14036 7.39107 7.42421 8.07104 8.18308 8.42299 9.00036 9.51403 10.54187 10.73390 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.030112 B = 0.005789 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.630965 B = 4835.691183 C = 5101.101866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.579 3.421 10 O -0.573 6.573 11 N -0.657 5.657 12 C 0.134 3.866 13 C -0.125 4.125 14 C 0.144 3.856 15 C -0.088 4.088 16 C 0.092 3.908 17 H 0.068 0.932 18 O -0.553 6.553 19 C 0.082 3.918 20 N -0.721 5.721 21 C 0.536 3.464 22 O -0.539 6.539 23 H 0.269 0.731 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.378 0.622 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -14.634 -6.625 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.088 0.912 9 C 0.387 3.613 10 O -0.455 6.455 11 N -0.399 5.399 12 C 0.009 3.991 13 C -0.129 4.129 14 C 0.019 3.981 15 C -0.125 4.125 16 C 0.033 3.967 17 H 0.086 0.914 18 O -0.357 6.357 19 C -0.043 4.043 20 N -0.375 5.375 21 C 0.322 3.678 22 O -0.415 6.415 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.225 0.775 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.360 -13.457 -6.050 16.489 hybrid contribution 0.571 -0.338 0.030 0.665 sum 7.932 -13.796 -6.020 17.014 Atomic orbital electron populations 1.70029 1.07098 1.27336 1.35230 1.25734 0.94660 1.00362 0.92578 0.86272 0.80507 0.81504 0.78260 1.18686 1.20082 1.20081 1.20842 0.93665 0.88672 1.53936 0.91231 1.18082 0.86528 0.80708 0.75990 1.90621 1.13786 1.85425 1.55658 1.50258 1.05371 1.03641 1.80591 1.22596 0.92584 0.84986 0.98932 1.22481 0.99905 0.94238 0.96253 1.22635 0.87258 0.88622 0.99610 1.21340 1.04089 0.95733 0.91341 1.21984 0.96860 0.96106 0.81787 0.91442 1.86627 1.92839 1.36940 1.19315 1.22039 1.00014 1.00390 0.81836 1.45424 1.63891 1.18524 1.09702 1.20057 0.77968 0.83782 0.85958 1.90742 1.52649 1.81424 1.16678 0.92035 0.90889 0.91144 0.90075 0.90445 0.88560 0.90173 0.77534 0.90926 0.90590 0.76625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.25 11.83 55.55 0.66 -22.59 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.34 29.56 -169.99 -5.02 15.31 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.53 -15.37 9.33 -35.63 -0.33 -15.70 16 8 H 0.07 1.85 7.67 -52.49 -0.40 1.45 16 9 C 0.58 16.99 7.98 -12.98 -0.10 16.89 16 10 O -0.57 -19.06 15.75 5.20 0.08 -18.98 16 11 N -0.66 -15.45 3.49 -182.02 -0.63 -16.08 16 12 C 0.13 2.57 7.88 -3.15 -0.02 2.55 16 13 C -0.12 -1.99 0.96 -155.66 -0.15 -2.14 16 14 C 0.14 2.72 7.50 -3.16 -0.02 2.70 16 15 C -0.09 -1.23 4.79 -26.64 -0.13 -1.36 16 16 C 0.09 0.97 3.54 -26.65 -0.09 0.87 16 17 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 18 O -0.55 -5.51 13.33 -35.23 -0.47 -5.98 16 19 C 0.08 0.65 6.74 -4.59 -0.03 0.62 16 20 N -0.72 -7.50 5.47 -61.45 -0.34 -7.84 16 21 C 0.54 7.88 7.06 -11.75 -0.08 7.80 16 22 O -0.54 -9.77 16.91 5.55 0.09 -9.68 16 23 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 24 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 25 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 26 H 0.08 1.56 7.44 -51.92 -0.39 1.17 16 27 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 28 H 0.10 1.64 7.98 -51.93 -0.41 1.22 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.38 1.81 9.08 45.56 0.41 2.23 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 3.46 8.83 -40.82 -0.36 3.10 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -37.83 285.04 -5.64 -43.46 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.23 Total: 3.50 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -1.07 Total: 14.57 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.31 Total: -46.51 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.29 Total: -34.64 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -37.83 -5.64 -43.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651761852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.305 kcal (2) G-P(sol) polarization free energy of solvation -37.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds