Wall clock time and date at job start Sun Mar 29 2020 23:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46786 * 2 1 4 4 H 1.09006 * 109.47107 * 54.26070 * 3 2 1 5 5 C 1.50703 * 109.46874 * 174.25444 * 3 2 1 6 6 H 1.08006 * 119.99609 * 119.99882 * 5 3 2 7 7 C 1.37878 * 120.00148 * 300.00449 * 5 3 2 8 8 N 1.31509 * 119.99841 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99792 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47065 * 89.99932 * 9 7 5 11 11 H 1.48505 * 109.46962 * 209.99850 * 9 7 5 12 12 H 1.48497 * 109.47634 * 329.99687 * 9 7 5 13 13 N 1.46898 * 109.47510 * 294.25542 * 3 2 1 14 14 C 1.46898 * 111.00013 * 150.59767 * 13 3 2 15 15 H 1.09000 * 109.47652 * 327.23913 * 14 13 3 16 16 C 1.53005 * 109.47242 * 87.23839 * 14 13 3 17 17 C 1.50698 * 109.47069 * 207.23592 * 14 13 3 18 18 N 1.29035 * 124.91554 * 134.72627 * 17 14 13 19 19 C 1.31782 * 117.12294 * 179.81592 * 18 17 14 20 20 C 1.50697 * 122.74906 * 180.22525 * 19 18 17 21 21 C 1.33638 * 114.50002 * 0.46578 * 19 18 17 22 22 S 1.70978 * 124.91684 * 315.02648 * 17 14 13 23 23 H 1.08998 * 109.46875 * 176.51776 * 1 2 3 24 24 H 1.09002 * 109.47120 * 296.52210 * 1 2 3 25 25 H 1.09001 * 109.47080 * 56.51691 * 1 2 3 26 26 H 1.09001 * 109.46866 * 240.00598 * 2 1 3 27 27 H 1.08990 * 109.47051 * 120.00074 * 2 1 3 28 28 H 0.97007 * 120.00221 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99956 * 26.64799 * 13 3 2 30 30 H 1.08996 * 109.47643 * 179.97438 * 16 14 13 31 31 H 1.08999 * 109.46702 * 299.99991 * 16 14 13 32 32 H 1.08997 * 109.47229 * 59.99536 * 16 14 13 33 33 H 1.09002 * 109.46747 * 270.24175 * 20 19 18 34 34 H 1.08999 * 109.47369 * 30.23373 * 20 19 18 35 35 H 1.08997 * 109.47409 * 150.24113 * 20 19 18 36 36 H 1.07999 * 126.03540 * 179.79630 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5951 1.9852 0.8342 5 6 3.5403 1.4449 0.1422 6 1 4.1550 1.8862 -0.6284 7 6 4.1281 0.8837 1.2561 8 7 3.3794 0.3468 2.1946 9 14 5.9877 0.8861 1.4319 10 1 6.4169 2.1220 2.1345 11 1 6.4123 -0.3016 2.2157 12 1 6.6124 0.8398 0.0856 13 7 1.6668 2.0939 -1.2627 14 6 1.4840 3.5394 -1.0754 15 1 1.0951 3.7299 -0.0751 16 6 2.8287 4.2496 -1.2437 17 6 0.5096 4.0594 -2.1006 18 7 -0.4649 4.8674 -1.8503 19 6 -1.2229 5.2275 -2.8663 20 6 -2.3908 6.1684 -2.7188 21 6 -0.8742 4.6860 -4.0372 22 16 0.5308 3.6586 -3.7627 23 1 -0.3633 -1.0258 -0.0624 24 1 -0.3633 0.4589 0.9195 25 1 -0.3633 0.5670 -0.8571 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.7929 -0.0477 2.9784 29 1 0.8384 1.6726 -1.6558 30 1 2.6931 5.3221 -1.1052 31 1 3.5335 3.8734 -0.5021 32 1 3.2176 4.0590 -2.2439 33 1 -3.2924 5.5966 -2.4990 34 1 -2.1951 6.8656 -1.9042 35 1 -2.5297 6.7233 -3.6466 36 1 -1.3662 4.8497 -4.9846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070634621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:02 Heat of formation + Delta-G solvation = 33.538275 kcal Electronic energy + Delta-G solvation = -16887.512753 eV Core-core repulsion = 14305.127981 eV Total energy + Delta-G solvation = -2582.384772 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70269 -36.90066 -33.70637 -31.81450 -31.04038 -28.51592 -27.50864 -26.59920 -24.47123 -22.78617 -20.66641 -19.93634 -19.09240 -17.39369 -16.31976 -15.54448 -14.89727 -14.75396 -14.42441 -13.79025 -13.56676 -12.97235 -12.74843 -12.67969 -12.53290 -12.27270 -12.12927 -11.43325 -11.23271 -11.17020 -11.07530 -10.94310 -10.78923 -10.57394 -9.90479 -9.76964 -9.67166 -9.34826 -9.16925 -9.08600 -8.48749 -8.34605 -7.41472 -5.97355 -4.00923 0.91059 1.61687 2.04864 2.95205 3.32594 3.39735 3.43698 4.19422 4.44865 5.09766 5.19299 5.22100 5.33110 5.33782 5.54257 5.68866 5.89296 5.97973 5.98579 6.14094 6.16620 6.34943 6.37707 6.39507 6.60744 6.82078 6.97301 7.04495 7.12258 7.41311 7.73490 7.89708 7.96442 8.20363 8.35029 8.64742 9.05812 9.63397 11.08284 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.005732 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.848366 B = 4884.003646 C = 5244.425888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.009 0.991 5 C -0.491 4.491 6 H 0.066 0.934 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.165 3.835 15 H 0.069 0.931 16 C -0.133 4.133 17 C 0.065 3.935 18 N -0.482 5.482 19 C 0.065 3.935 20 C -0.076 4.076 21 C -0.291 4.291 22 S 0.151 5.849 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.102 0.898 28 H 0.259 0.741 29 H 0.320 0.680 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 7.089 -10.127 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.026 0.974 5 C -0.530 4.530 6 H 0.084 0.916 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.310 5.310 14 C 0.051 3.949 15 H 0.086 0.914 16 C -0.192 4.192 17 C -0.213 4.213 18 N -0.197 5.197 19 C -0.068 4.068 20 C -0.136 4.136 21 C -0.430 4.430 22 S 0.407 5.593 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.762 6.576 -10.256 13.934 hybrid contribution -0.683 0.520 0.687 1.100 sum -7.445 7.096 -9.569 14.048 Atomic orbital electron populations 1.21890 0.99634 0.99526 0.99766 1.21812 0.91186 1.00308 1.03276 1.19291 0.95865 0.90029 0.83624 0.97376 1.21224 0.90948 1.36513 1.04290 0.91565 1.24961 0.98019 0.95617 0.95925 1.69868 1.34699 1.39461 1.09521 0.86566 0.85831 0.77358 0.78063 1.20875 1.21445 1.19867 1.61064 1.38595 0.99447 1.31921 1.20161 0.91334 0.90400 0.92958 0.91369 1.21885 0.96254 0.97592 1.03455 1.27682 0.97758 0.97863 0.97994 1.66197 1.05364 1.14281 1.33841 1.20281 0.98650 1.00274 0.87593 1.20316 0.93527 0.96938 1.02785 1.26860 1.04943 1.07856 1.03386 1.84137 1.25344 1.43212 1.06643 0.94301 0.93755 0.94912 0.93948 0.87974 0.93065 0.86175 0.93860 0.89021 0.92677 0.90920 0.90763 0.91066 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.81 37.16 0.36 -2.58 16 2 C -0.13 -2.94 5.33 -26.73 -0.14 -3.08 16 3 C 0.22 5.27 2.03 -68.87 -0.14 5.13 16 4 H 0.01 0.23 7.32 -51.93 -0.38 -0.15 16 5 C -0.49 -12.89 7.43 -34.44 -0.26 -13.15 16 6 H 0.07 1.75 7.02 -52.48 -0.37 1.38 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -14.00 5.98 -102.17 -0.61 -14.61 16 14 C 0.16 3.18 3.13 -68.86 -0.22 2.97 16 15 H 0.07 1.45 7.34 -51.93 -0.38 1.07 16 16 C -0.13 -2.45 9.11 37.16 0.34 -2.11 16 17 C 0.07 1.14 5.98 -13.45 -0.08 1.06 16 18 N -0.48 -8.37 10.53 -8.06 -0.08 -8.46 16 19 C 0.06 0.93 6.74 -84.23 -0.57 0.36 16 20 C -0.08 -0.80 10.31 36.00 0.37 -0.43 16 21 C -0.29 -3.76 11.13 29.12 0.32 -3.44 16 22 S 0.15 2.20 22.82 -107.50 -2.45 -0.25 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.59 6.41 -51.93 -0.33 0.26 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 29 H 0.32 6.27 5.91 -39.29 -0.23 6.04 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.88 6.22 -51.93 -0.32 1.55 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -27.97 305.40 -8.30 -36.27 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.26 Total: 4.65 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.10 Total: -13.87 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.07 Total: -47.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.45 Total: -0.25 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.97 -8.30 -36.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.812 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds