Wall clock time and date at job start Sun Mar 29 2020 23:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.47163 * 2 1 4 4 N 1.29023 * 124.91372 * 89.99896 * 3 2 1 5 5 C 1.31784 * 117.12236 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.74831 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47126 * 275.03016 * 6 5 4 8 8 C 1.46908 * 110.99949 * 293.95138 * 7 6 5 9 9 C 1.46898 * 111.00395 * 170.00081 * 7 6 5 10 10 H 1.09005 * 109.46806 * 59.99754 * 9 7 6 11 11 C 1.52998 * 109.47197 * 299.99915 * 9 7 6 12 12 C 1.50702 * 109.47315 * 179.97438 * 9 7 6 13 13 H 1.08000 * 119.99999 * 0.02562 * 12 9 7 14 14 C 1.37872 * 119.99934 * 179.97438 * 12 9 7 15 15 N 1.31519 * 119.99964 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00073 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47148 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47254 * 120.00015 * 16 14 12 19 19 H 1.48500 * 109.47104 * 240.00250 * 16 14 12 20 20 C 1.33639 * 114.50230 * 0.02562 * 5 4 3 21 21 S 1.70979 * 124.91513 * 270.00245 * 3 2 1 22 22 H 1.09000 * 109.47493 * 59.99685 * 1 2 3 23 23 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47107 * 299.99656 * 1 2 3 25 25 H 1.09004 * 109.46922 * 240.00567 * 2 1 3 26 26 H 1.09000 * 109.47493 * 120.00315 * 2 1 3 27 27 H 1.09000 * 109.47299 * 35.02234 * 6 5 4 28 28 H 1.08996 * 109.47276 * 155.03046 * 6 5 4 29 29 H 1.09005 * 109.46527 * 59.99800 * 8 7 6 30 30 H 1.08992 * 109.47255 * 179.97438 * 8 7 6 31 31 H 1.09005 * 109.47030 * 300.00776 * 8 7 6 32 32 H 1.08995 * 109.47568 * 180.02562 * 11 9 7 33 33 H 1.09005 * 109.46756 * 300.00063 * 11 9 7 34 34 H 1.08995 * 109.47349 * 59.99329 * 11 9 7 35 35 H 0.97000 * 119.99539 * 180.02562 * 15 14 12 36 36 H 1.07997 * 126.03698 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7142 3.3479 0.8794 6 6 3.0402 4.2716 2.0246 7 7 1.8147 4.9450 2.4747 8 6 1.2970 5.8456 1.4358 9 6 2.0431 5.6686 3.7325 10 1 2.8199 6.4189 3.5841 11 6 2.4867 4.6825 4.8149 12 6 0.7669 6.3456 4.1615 13 1 -0.1248 6.2477 3.5602 14 6 0.7374 7.0890 5.3223 15 7 1.8233 7.2078 6.0548 16 14 -0.8447 7.9276 5.8545 17 1 -1.9138 7.6415 4.8644 18 1 -1.2529 7.4145 7.1869 19 1 -0.6248 9.3940 5.9349 20 6 2.8422 3.7103 -0.4006 21 16 2.3585 2.3436 -1.4020 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.4611 3.6948 2.8482 28 1 3.7644 5.0168 1.6955 29 1 1.0706 5.2716 0.5373 30 1 0.3895 6.3308 1.7949 31 1 2.0468 6.6022 1.2043 32 1 2.6557 5.2192 5.7483 33 1 1.7099 3.9322 4.9632 34 1 3.4098 4.1931 4.5044 35 1 1.8024 7.7305 6.8717 36 1 3.1819 4.6711 -0.7580 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070698304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:34 Heat of formation + Delta-G solvation = 25.801720 kcal Electronic energy + Delta-G solvation = -16763.681073 eV Core-core repulsion = 14180.960819 eV Total energy + Delta-G solvation = -2582.720254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99749 -38.54783 -35.29733 -34.46680 -31.59995 -30.50032 -28.87363 -26.90179 -26.11917 -25.01600 -22.69790 -21.34242 -20.63152 -18.61180 -18.27717 -17.09310 -16.48930 -16.13355 -15.76586 -15.45533 -15.21731 -14.94398 -14.31941 -14.27248 -13.92870 -13.56786 -13.14564 -12.98615 -12.94483 -12.79540 -12.58407 -12.49188 -12.23506 -12.11162 -12.00047 -11.94276 -11.62555 -10.91913 -10.53967 -10.48273 -10.29322 -9.63661 -8.95614 -8.12269 -6.24050 -0.20146 0.48629 0.78002 1.40553 1.42408 1.54225 1.82767 2.42332 3.14320 3.15900 3.48291 3.90775 4.22780 4.24835 4.33108 4.36756 4.45858 4.60494 4.66276 4.70655 4.74625 4.93391 5.00154 5.00751 5.03652 5.11396 5.19776 5.22567 5.36844 5.46930 5.70416 5.75031 6.22891 6.36400 6.67220 6.89369 6.94546 7.44776 8.94090 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.004980 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.509800 B = 5620.999729 C = 5791.386931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.040 3.960 4 N -0.494 5.494 5 C 0.073 3.927 6 C 0.123 3.877 7 N -0.540 5.540 8 C 0.044 3.956 9 C 0.218 3.782 10 H -0.031 1.031 11 C -0.120 4.120 12 C -0.518 4.518 13 H 0.057 0.943 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.279 1.279 20 C -0.264 4.264 21 S 0.158 5.842 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.036 0.964 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 -11.714 -16.038 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.238 4.238 4 N -0.210 5.210 5 C -0.059 4.059 6 C -0.008 4.008 7 N -0.264 5.264 8 C -0.105 4.105 9 C 0.112 3.888 10 H -0.013 1.013 11 C -0.178 4.178 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.404 4.404 21 S 0.413 5.587 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.056 0.944 25 H 0.132 0.868 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.405 -12.408 -16.353 20.532 hybrid contribution 0.262 2.017 1.371 2.453 sum 0.667 -10.392 -14.983 18.246 Atomic orbital electron populations 1.21746 0.93138 1.03566 1.01745 1.20397 0.96980 0.85961 1.05354 1.27697 1.02287 1.02902 0.90950 1.66036 1.15154 1.06575 1.33191 1.20059 1.00426 0.91193 0.94198 1.20568 0.91709 0.94308 0.94174 1.61986 1.28240 1.31789 1.04416 1.22180 0.99712 0.94509 0.94075 1.19058 0.94593 0.89727 0.85464 1.01342 1.21658 0.97095 0.97848 1.01163 1.21411 0.96659 1.29810 1.07772 0.92466 1.25709 0.99514 0.97087 0.96361 1.70025 1.29099 1.41403 1.15423 0.85452 0.79711 0.78048 0.78078 1.19359 1.20587 1.20428 1.27053 1.12272 1.05461 0.95615 1.83384 1.59963 1.04158 1.11177 0.92021 0.89103 0.94449 0.86787 0.89128 0.90552 0.93626 0.91826 0.92199 0.96640 0.91839 0.95539 0.95282 0.92862 0.79494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.89 71.98 0.71 -1.80 16 2 C -0.05 -0.85 6.52 29.85 0.19 -0.65 16 3 C 0.04 1.04 6.64 88.52 0.59 1.63 16 4 N -0.49 -17.15 10.53 -179.39 -1.89 -19.04 16 5 C 0.07 2.52 5.57 41.52 0.23 2.75 16 6 C 0.12 4.87 5.22 85.56 0.45 5.31 16 7 N -0.54 -24.76 4.61 -906.02 -4.18 -28.94 16 8 C 0.04 1.79 8.98 127.69 1.15 2.93 16 9 C 0.22 11.60 2.06 44.17 0.09 11.69 16 10 H -0.03 -1.79 8.14 -2.38 -0.02 -1.81 16 11 C -0.12 -6.21 8.77 71.98 0.63 -5.58 16 12 C -0.52 -29.38 7.88 25.60 0.20 -29.17 16 13 H 0.06 3.25 6.40 -2.91 -0.02 3.23 16 14 C 0.01 0.67 5.30 84.65 0.45 1.12 16 15 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 16 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 C -0.26 -7.26 9.88 66.78 0.66 -6.60 16 21 S 0.16 3.40 23.18 -56.49 -1.31 2.09 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 3.20 5.83 -2.39 -0.01 3.19 16 28 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 29 H 0.06 2.29 6.47 -2.38 -0.02 2.28 16 30 H 0.06 2.65 6.10 -2.39 -0.01 2.64 16 31 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 3.57 6.07 -2.39 -0.01 3.55 16 33 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.03 1.34 6.20 -2.39 -0.01 1.33 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.19 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -65.80 303.87 1.30 -64.50 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.06 Total: 6.75 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 5.35 Total: -18.36 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -5.83 Total: -101.48 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.31 Total: 2.09 kcal Total: -65.80 1.30 -64.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070698304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.302 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds