Wall clock time and date at job start Mon Mar 30 2020 00:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47543 * 2 1 4 4 C 1.50706 * 109.47144 * 119.99722 * 2 1 3 5 5 H 1.08006 * 119.99607 * 119.99851 * 4 2 1 6 6 C 1.37875 * 120.00205 * 300.27994 * 4 2 1 7 7 N 1.31516 * 119.99598 * 359.71583 * 6 4 2 8 8 Si 1.86796 * 120.00294 * 179.72407 * 6 4 2 9 9 H 1.48495 * 109.47115 * 59.99190 * 8 6 4 10 10 H 1.48497 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46756 * 299.99713 * 8 6 4 12 12 N 1.46900 * 109.47083 * 239.99680 * 2 1 3 13 13 C 1.46900 * 111.00133 * 307.41620 * 12 2 1 14 14 C 1.39577 * 111.00006 * 71.37552 * 12 2 1 15 15 C 1.35415 * 126.63341 * 67.33876 * 14 12 2 16 16 N 1.48082 * 125.94552 * 0.02562 * 15 14 12 17 17 O 1.21796 * 120.00278 * 9.90322 * 16 15 14 18 18 O 1.21812 * 119.99627 * 189.90636 * 16 15 14 19 19 N 1.34237 * 108.10755 * 179.97438 * 15 14 12 20 20 C 1.30390 * 109.40316 * 0.02562 * 19 15 14 21 21 N 1.36196 * 108.68302 * 359.76601 * 20 19 15 22 22 C 1.46496 * 126.46515 * 180.23601 * 21 20 19 23 23 H 1.08992 * 109.47477 * 186.82034 * 1 2 3 24 24 H 1.09004 * 109.46878 * 306.82219 * 1 2 3 25 25 H 1.09000 * 109.46948 * 66.81816 * 1 2 3 26 26 H 0.97003 * 120.00025 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46727 * 65.20242 * 13 12 2 28 28 H 1.09001 * 109.47156 * 185.19696 * 13 12 2 29 29 H 1.08998 * 109.47067 * 305.19863 * 13 12 2 30 30 H 1.07994 * 125.65786 * 179.97438 * 20 19 15 31 31 H 1.08998 * 109.47190 * 262.10190 * 22 21 20 32 32 H 1.08995 * 109.47512 * 22.10604 * 22 21 20 33 33 H 1.09000 * 109.47037 * 142.10503 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6945 -0.2427 2.4828 7 7 0.9385 0.8267 2.6034 8 14 2.3108 -1.1277 4.0080 9 1 3.7957 -1.1284 4.0137 10 1 1.8118 -0.4304 5.2204 11 1 1.8152 -2.5275 4.0022 12 7 2.0196 -0.6926 -1.1994 13 6 1.4095 -2.0229 -1.3251 14 6 1.7940 0.0716 -2.3454 15 6 2.3838 1.2491 -2.6604 16 7 3.3926 1.9620 -1.8437 17 8 3.8943 1.4125 -0.8795 18 8 3.7207 3.0980 -2.1363 19 7 1.8957 1.6572 -3.8425 20 6 1.0280 0.7862 -4.2767 21 7 0.9364 -0.2272 -3.3714 22 6 0.0806 -1.4117 -3.4739 23 1 -0.3634 -1.0203 0.1220 24 1 -0.3633 0.6159 0.8227 25 1 -0.3633 0.4045 -0.9447 26 1 0.7011 1.1560 3.4844 27 1 0.3374 -1.9167 -1.4907 28 1 1.8569 -2.5497 -2.1680 29 1 1.5815 -2.5895 -0.4099 30 1 0.4761 0.8551 -5.2025 31 1 -0.8288 -1.2542 -2.8939 32 1 -0.1797 -1.5826 -4.5184 33 1 0.6134 -2.2796 -3.0856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080760196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:44 Heat of formation + Delta-G solvation = 98.947870 kcal Electronic energy + Delta-G solvation = -20005.765200 eV Core-core repulsion = 16879.923587 eV Total energy + Delta-G solvation = -3125.841613 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.58418 -40.81015 -37.72112 -35.50892 -34.38888 -32.86855 -29.94741 -29.00072 -28.22342 -25.54314 -25.11753 -24.89270 -21.47036 -21.28228 -19.85572 -18.25249 -17.61659 -16.98616 -16.42293 -16.25847 -15.83991 -15.06371 -14.77223 -14.53980 -14.00401 -13.35149 -13.30479 -13.05493 -12.62216 -11.75576 -11.33431 -11.23144 -10.89719 -10.83027 -10.68623 -10.59904 -10.47817 -10.22841 -10.19565 -10.12084 -9.84245 -9.40475 -9.03218 -8.51656 -7.65155 -6.15455 -4.20651 1.05023 1.87093 2.00686 2.67562 3.04859 3.27302 3.33488 3.36552 4.02269 4.36692 4.47894 4.60818 4.80057 4.91184 5.16057 5.19295 5.34212 5.44045 5.74234 5.84354 6.12259 6.31009 6.41177 6.57435 6.60677 7.02599 7.15490 7.27772 7.50877 7.59742 7.73053 7.94999 8.16520 8.67058 8.80336 9.44149 10.92978 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.008699 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.736241 B = 3217.851553 C = 3942.503657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.217 3.783 3 H 0.056 0.944 4 C -0.504 4.504 5 H 0.068 0.932 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.435 5.435 13 C 0.003 3.997 14 C 0.310 3.690 15 C 0.003 3.997 16 N 0.074 4.926 17 O -0.117 6.117 18 O -0.188 6.188 19 N -0.438 5.438 20 C 0.199 3.801 21 N -0.485 5.485 22 C 0.049 3.951 23 H 0.040 0.960 24 H 0.096 0.904 25 H 0.002 0.998 26 H 0.265 0.735 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.223 0.777 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 -6.917 -11.415 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.115 3.885 3 H 0.074 0.926 4 C -0.543 4.543 5 H 0.086 0.914 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.733 3.267 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.153 5.153 13 C -0.144 4.144 14 C 0.091 3.909 15 C -0.207 4.207 16 N 0.592 4.408 17 O -0.337 6.337 18 O -0.394 6.394 19 N -0.157 5.157 20 C -0.086 4.086 21 N -0.177 5.177 22 C -0.092 4.092 23 H 0.059 0.941 24 H 0.115 0.885 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.239 0.761 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.731 -6.502 -11.934 14.390 hybrid contribution -0.560 -0.842 1.147 1.529 sum -5.291 -7.344 -10.786 14.081 Atomic orbital electron populations 1.22516 0.99420 1.01071 0.99744 1.19736 0.89944 0.95660 0.83177 0.92611 1.20783 1.31746 1.13078 0.88645 0.91390 1.24888 0.94812 0.94985 0.99122 1.69865 1.36256 1.22626 1.24133 0.86432 0.79607 0.79172 0.81493 1.19761 1.21262 1.20365 1.60132 1.52901 1.02779 0.99502 1.23111 0.97224 0.90264 1.03809 1.19919 0.89385 0.92352 0.89292 1.19911 1.06912 0.96474 0.97394 1.42071 0.99146 1.00025 0.99591 1.94689 1.53416 1.69513 1.16129 1.94480 1.66200 1.03074 1.75678 1.69573 1.10266 1.27559 1.08315 1.24971 1.01254 0.84245 0.98173 1.46066 1.32001 1.20699 1.18968 1.22914 0.94902 0.86925 1.04428 0.94135 0.88502 0.97928 0.92518 0.93413 0.92170 0.88142 0.76078 0.89910 0.89158 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 7.94 37.16 0.30 -3.46 16 2 C 0.22 5.24 1.68 -68.86 -0.12 5.12 16 3 H 0.06 1.58 5.92 -51.93 -0.31 1.27 16 4 C -0.50 -13.06 7.91 -34.44 -0.27 -13.33 16 5 H 0.07 1.73 7.23 -52.48 -0.38 1.35 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.70 11.39 55.43 0.63 -24.07 16 8 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.44 -8.89 4.24 -174.37 -0.74 -9.63 16 13 C 0.00 0.04 6.86 60.06 0.41 0.45 16 14 C 0.31 5.95 5.25 -151.70 -0.80 5.15 16 15 C 0.00 0.06 7.71 -145.13 -1.12 -1.06 16 16 N 0.07 1.79 4.26 32.78 0.14 1.93 16 17 O -0.12 -3.00 16.33 -29.46 -0.48 -3.48 16 18 O -0.19 -4.59 19.25 -29.46 -0.57 -5.16 16 19 N -0.44 -8.28 11.23 -11.24 -0.13 -8.40 16 20 C 0.20 2.69 12.61 -89.40 -1.13 1.56 16 21 N -0.49 -6.78 3.19 -124.66 -0.40 -7.17 16 22 C 0.05 0.43 9.26 59.84 0.55 0.99 16 23 H 0.04 0.83 6.86 -51.93 -0.36 0.47 16 24 H 0.10 2.45 6.27 -51.93 -0.33 2.13 16 25 H 0.00 0.04 7.40 -51.93 -0.38 -0.35 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.05 0.65 3.96 -51.93 -0.21 0.45 16 28 H 0.06 0.76 6.73 -51.93 -0.35 0.41 16 29 H 0.10 1.68 6.83 -51.93 -0.35 1.32 16 30 H 0.22 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 32 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 33 H 0.11 0.93 4.26 -51.93 -0.22 0.71 16 LS Contribution 272.92 15.07 4.11 4.11 Total: -1.00 -32.92 272.92 -7.98 -40.89 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.26 Total: -1.70 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.26 Total: -2.97 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.49 Total: -47.35 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.05 Total: -8.64 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.92 -7.98 -40.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.839 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds