Wall clock time and date at job start Mon Mar 30 2020 00:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47543 * 2 1 4 4 C 1.50706 * 109.47144 * 119.99722 * 2 1 3 5 5 H 1.08006 * 119.99607 * 119.99851 * 4 2 1 6 6 C 1.37875 * 120.00205 * 300.27994 * 4 2 1 7 7 N 1.31516 * 119.99598 * 359.71583 * 6 4 2 8 8 Si 1.86796 * 120.00294 * 179.72407 * 6 4 2 9 9 H 1.48495 * 109.47115 * 59.99190 * 8 6 4 10 10 H 1.48497 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46756 * 299.99713 * 8 6 4 12 12 N 1.46900 * 109.47083 * 239.99680 * 2 1 3 13 13 C 1.46900 * 111.00133 * 307.41620 * 12 2 1 14 14 C 1.39577 * 111.00006 * 71.37552 * 12 2 1 15 15 C 1.35415 * 126.63341 * 67.33876 * 14 12 2 16 16 N 1.48082 * 125.94552 * 0.02562 * 15 14 12 17 17 O 1.21796 * 120.00278 * 9.90322 * 16 15 14 18 18 O 1.21812 * 119.99627 * 189.90636 * 16 15 14 19 19 N 1.34237 * 108.10755 * 179.97438 * 15 14 12 20 20 C 1.30390 * 109.40316 * 0.02562 * 19 15 14 21 21 N 1.36196 * 108.68302 * 359.76601 * 20 19 15 22 22 C 1.46496 * 126.46515 * 180.23601 * 21 20 19 23 23 H 1.08992 * 109.47477 * 186.82034 * 1 2 3 24 24 H 1.09004 * 109.46878 * 306.82219 * 1 2 3 25 25 H 1.09000 * 109.46948 * 66.81816 * 1 2 3 26 26 H 0.97003 * 120.00025 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46727 * 65.20242 * 13 12 2 28 28 H 1.09001 * 109.47156 * 185.19696 * 13 12 2 29 29 H 1.08998 * 109.47067 * 305.19863 * 13 12 2 30 30 H 1.07994 * 125.65786 * 179.97438 * 20 19 15 31 31 H 1.08998 * 109.47190 * 262.10190 * 22 21 20 32 32 H 1.08995 * 109.47512 * 22.10604 * 22 21 20 33 33 H 1.09000 * 109.47037 * 142.10503 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6945 -0.2427 2.4828 7 7 0.9385 0.8267 2.6034 8 14 2.3108 -1.1277 4.0080 9 1 3.7957 -1.1284 4.0137 10 1 1.8118 -0.4304 5.2204 11 1 1.8152 -2.5275 4.0022 12 7 2.0196 -0.6926 -1.1994 13 6 1.4095 -2.0229 -1.3251 14 6 1.7940 0.0716 -2.3454 15 6 2.3838 1.2491 -2.6604 16 7 3.3926 1.9620 -1.8437 17 8 3.8943 1.4125 -0.8795 18 8 3.7207 3.0980 -2.1363 19 7 1.8957 1.6572 -3.8425 20 6 1.0280 0.7862 -4.2767 21 7 0.9364 -0.2272 -3.3714 22 6 0.0806 -1.4117 -3.4739 23 1 -0.3634 -1.0203 0.1220 24 1 -0.3633 0.6159 0.8227 25 1 -0.3633 0.4045 -0.9447 26 1 0.7011 1.1560 3.4844 27 1 0.3374 -1.9167 -1.4907 28 1 1.8569 -2.5497 -2.1680 29 1 1.5815 -2.5895 -0.4099 30 1 0.4761 0.8551 -5.2025 31 1 -0.8288 -1.2542 -2.8939 32 1 -0.1797 -1.5826 -4.5184 33 1 0.6134 -2.2796 -3.0856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080760196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:44 Heat of formation + Delta-G solvation = 77.609506 kcal Electronic energy + Delta-G solvation = -20006.690501 eV Core-core repulsion = 16879.923587 eV Total energy + Delta-G solvation = -3126.766914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.93585 -42.53703 -39.26680 -37.33338 -35.67004 -34.66624 -31.57965 -30.50461 -29.49420 -27.44599 -26.47518 -26.34317 -23.12994 -22.61306 -21.44421 -19.73615 -19.38786 -18.70791 -18.18180 -17.74823 -17.12619 -16.62045 -16.23085 -15.81471 -15.49928 -14.72449 -14.32524 -14.30984 -14.16968 -13.42808 -13.04050 -12.95458 -12.64603 -12.53686 -12.42105 -12.28042 -12.13268 -12.05039 -11.98557 -11.63319 -11.17738 -11.02165 -10.62897 -10.50626 -9.12089 -8.16801 -6.27771 -0.72463 0.37943 0.66365 1.43141 1.47486 1.49530 1.55209 1.63863 2.40241 2.72257 3.16007 3.38655 3.61486 3.74544 4.06934 4.24624 4.34479 4.45919 4.52077 4.57042 4.63886 4.72493 4.80068 4.93015 5.21174 5.40433 5.46632 5.61433 5.76064 5.96166 6.07312 6.24774 6.41848 6.78614 6.86743 7.40517 8.90928 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.008699 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.736241 B = 3217.851553 C = 3942.503657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.227 3.773 3 H 0.004 0.996 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.965 3.035 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.259 1.259 12 N -0.456 5.456 13 C -0.001 4.001 14 C 0.307 3.693 15 C -0.030 4.030 16 N 0.076 4.924 17 O -0.172 6.172 18 O -0.210 6.210 19 N -0.488 5.488 20 C 0.247 3.753 21 N -0.473 5.473 22 C 0.035 3.965 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.017 0.983 26 H 0.263 0.737 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.290 0.710 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -9.512 -13.851 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.123 3.877 3 H 0.022 0.978 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.790 3.210 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.174 5.174 13 C -0.146 4.146 14 C 0.084 3.916 15 C -0.239 4.239 16 N 0.583 4.417 17 O -0.381 6.381 18 O -0.414 6.414 19 N -0.208 5.208 20 C -0.039 4.039 21 N -0.163 5.163 22 C -0.103 4.103 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.305 0.695 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.841 -9.148 -14.332 18.327 hybrid contribution -0.021 -0.086 1.665 1.667 sum -6.862 -9.233 -12.667 17.111 Atomic orbital electron populations 1.22251 0.98034 1.01506 0.99128 1.19303 0.90693 0.93200 0.84493 0.97761 1.21093 1.31238 1.12914 0.89727 0.91451 1.25682 0.95087 0.95656 1.01995 1.70017 1.37635 1.24066 1.24418 0.85501 0.78511 0.78959 0.78028 1.20361 1.21352 1.18384 1.59786 1.54269 1.04383 0.98933 1.23341 0.98816 0.87730 1.04700 1.19716 0.90199 0.91533 0.90162 1.20044 1.07518 0.97710 0.98644 1.42507 0.99618 0.99937 0.99614 1.94656 1.55585 1.69807 1.18075 1.94415 1.67132 1.04069 1.75778 1.69543 1.13095 1.30226 1.07946 1.26374 0.97624 0.81599 0.98263 1.46394 1.30733 1.22135 1.17029 1.23395 0.93944 0.84690 1.08286 0.92224 0.91856 0.96369 0.92817 0.90988 0.88628 0.89603 0.69507 0.89151 0.83863 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.63 7.94 71.98 0.57 -6.06 16 2 C 0.23 11.17 1.68 44.17 0.07 11.24 16 3 H 0.00 0.27 5.92 -2.39 -0.01 0.25 16 4 C -0.51 -27.02 7.91 25.60 0.20 -26.82 16 5 H 0.07 3.47 7.23 -2.91 -0.02 3.45 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -52.85 11.39 21.45 0.24 -52.60 16 8 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 N -0.46 -18.32 4.24 -705.58 -2.99 -21.31 16 13 C 0.00 -0.01 6.86 127.69 0.88 0.86 16 14 C 0.31 11.31 5.25 130.57 0.69 12.00 16 15 C -0.03 -1.31 7.71 128.27 0.99 -0.32 16 16 N 0.08 3.91 4.26 -50.19 -0.21 3.70 16 17 O -0.17 -9.50 16.33 18.89 0.31 -9.19 16 18 O -0.21 -10.89 19.25 18.87 0.36 -10.52 16 19 N -0.49 -17.57 11.23 -189.46 -2.13 -19.70 16 20 C 0.25 5.43 12.61 179.92 2.27 7.70 16 21 N -0.47 -11.00 3.19 -548.31 -1.75 -12.75 16 22 C 0.04 0.39 9.26 127.77 1.18 1.57 16 23 H 0.06 2.34 6.86 -2.39 -0.02 2.33 16 24 H 0.06 3.26 6.27 -2.38 -0.01 3.24 16 25 H 0.02 0.70 7.40 -2.39 -0.02 0.68 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.07 1.67 3.96 -2.39 -0.01 1.66 16 28 H 0.10 2.01 6.73 -2.39 -0.02 2.00 16 29 H 0.09 2.70 6.83 -2.39 -0.02 2.68 16 30 H 0.29 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.09 0.98 7.73 -2.39 -0.02 0.96 16 32 H 0.14 0.20 8.13 -2.39 -0.02 0.18 16 33 H 0.12 1.23 4.26 -2.39 -0.01 1.22 16 Total: -1.00 -79.78 272.92 4.31 -75.47 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: 1.15 Total: 0.50 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 7.30 Total: 1.43 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -6.84 Total: -102.66 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.67 Total: -19.72 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -79.78 4.31 -75.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.081 kcal (2) G-P(sol) polarization free energy of solvation -79.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds