Wall clock time and date at job start Sun Mar 29 2020 23:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29030 * 124.92188 * 2 1 4 4 C 1.31779 * 117.12727 * 179.74625 * 3 2 1 5 5 C 1.33643 * 114.49936 * 0.52500 * 4 3 2 6 6 C 1.50692 * 126.03542 * 179.78810 * 5 4 3 7 7 H 1.09006 * 109.47720 * 19.71537 * 6 5 4 8 8 C 1.53006 * 109.47219 * 259.71433 * 6 5 4 9 9 N 1.46905 * 109.47193 * 139.71468 * 6 5 4 10 10 C 1.46902 * 110.99800 * 204.99693 * 9 6 5 11 11 C 1.53006 * 109.46626 * 179.97438 * 10 9 6 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00347 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46867 * 90.00546 * 17 15 13 19 19 H 1.48501 * 109.47216 * 210.00404 * 17 15 13 20 20 H 1.48499 * 109.47135 * 330.00745 * 17 15 13 21 21 S 1.70980 * 124.91391 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47725 * 269.95482 * 1 2 3 23 23 H 1.09006 * 109.46901 * 29.95985 * 1 2 3 24 24 H 1.09000 * 109.47456 * 149.95364 * 1 2 3 25 25 H 1.08000 * 122.74980 * 180.33703 * 4 3 2 26 26 H 1.09002 * 109.47182 * 180.02562 * 8 6 5 27 27 H 1.08998 * 109.47049 * 300.00332 * 8 6 5 28 28 H 1.09001 * 109.47090 * 60.00028 * 8 6 5 29 29 H 1.00891 * 110.99988 * 328.95109 * 9 6 5 30 30 H 1.09000 * 109.47263 * 60.00269 * 10 9 6 31 31 H 1.09001 * 109.47582 * 299.99548 * 10 9 6 32 32 H 1.08993 * 109.46955 * 300.00347 * 11 10 9 33 33 H 1.09000 * 109.47050 * 60.00176 * 11 10 9 34 34 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 35 35 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 36 36 H 0.96991 * 119.99882 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8792 0.0052 5 6 3.9354 -0.4008 -0.0013 6 6 5.3573 -0.8995 -0.0021 7 1 6.0201 -0.1089 0.3498 8 6 5.7553 -1.3036 -1.4232 9 7 5.4685 -2.0635 0.8872 10 6 6.8427 -2.2176 1.3833 11 6 6.9185 -3.4369 2.3044 12 6 8.3498 -3.5978 2.8206 13 6 8.4247 -4.7991 3.7274 14 1 7.5400 -5.3891 3.9163 15 6 9.6226 -5.1451 4.3159 16 7 9.6881 -6.1938 5.1068 17 14 11.1529 -4.1250 3.9887 18 1 11.2527 -3.0435 5.0013 19 1 12.3543 -4.9939 4.0724 20 1 11.0683 -3.5268 2.6322 21 16 2.4855 -1.4021 -0.0006 22 1 -0.3634 -0.0008 1.0276 23 1 -0.3633 0.8904 -0.5132 24 1 -0.3634 -0.8895 -0.5145 25 1 4.2532 1.6999 0.0110 26 1 6.7837 -1.6648 -1.4237 27 1 5.0926 -2.0943 -1.7751 28 1 5.6728 -0.4400 -2.0831 29 1 4.8133 -1.9984 1.6516 30 1 7.1308 -1.3249 1.9384 31 1 7.5199 -2.3558 0.5405 32 1 6.2413 -3.2983 3.1471 33 1 6.6302 -4.3298 1.7497 34 1 9.0267 -3.7366 1.9776 35 1 8.6385 -2.7049 3.3752 36 1 10.5309 -6.4373 5.5205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090408043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:53 Heat of formation + Delta-G solvation = 24.157026 kcal Electronic energy + Delta-G solvation = -15874.477091 eV Core-core repulsion = 13291.685518 eV Total energy + Delta-G solvation = -2582.791573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -39.91652 -37.30570 -34.25001 -32.56317 -31.58925 -29.86457 -27.81575 -26.40110 -24.21721 -22.67100 -21.37610 -20.29190 -19.40450 -18.02615 -16.75528 -15.92595 -15.54827 -15.19059 -14.54944 -14.29511 -14.07799 -13.72131 -13.53909 -12.98609 -12.76399 -12.60259 -12.50653 -12.08367 -11.96686 -11.70316 -11.56924 -11.22886 -10.94540 -10.75786 -9.97619 -9.80796 -9.73042 -9.60768 -9.35540 -9.17474 -8.91095 -8.53281 -8.40755 -6.03448 -4.01308 0.52118 1.17657 1.64730 2.64028 3.30530 3.37987 3.41507 3.94819 4.17643 4.45603 4.55180 4.82317 5.11160 5.13459 5.16101 5.20476 5.30401 5.39461 5.54449 5.57713 5.67002 5.73338 5.80185 5.99149 6.08742 6.19222 6.50995 6.55027 6.89528 7.10308 7.33380 7.37773 7.46684 7.56525 7.80664 8.55581 9.02087 9.59091 11.10169 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.003590 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.965387 B = 7797.378340 C = 8118.048512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.025 3.975 3 N -0.477 5.477 4 C 0.035 3.965 5 C -0.223 4.223 6 C 0.159 3.841 7 H 0.063 0.937 8 C -0.136 4.136 9 N -0.685 5.685 10 C 0.056 3.944 11 C -0.099 4.099 12 C -0.012 4.012 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 S 0.164 5.836 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.172 0.828 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.341 0.659 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.016 0.984 35 H 0.009 0.991 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 13.394 -12.930 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.253 4.253 3 N -0.192 5.192 4 C -0.117 4.117 5 C -0.345 4.345 6 C 0.047 3.953 7 H 0.081 0.919 8 C -0.194 4.194 9 N -0.317 5.317 10 C -0.072 4.072 11 C -0.137 4.137 12 C -0.050 4.050 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 S 0.419 5.581 22 H 0.103 0.897 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.189 0.811 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.027 0.973 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.674 12.287 -13.342 23.971 hybrid contribution 1.637 1.961 0.648 2.635 sum -14.037 14.248 -12.693 23.689 Atomic orbital electron populations 1.20411 0.85374 1.04033 1.03841 1.27131 1.01951 0.92022 1.04151 1.66288 1.04730 1.31947 1.16232 1.21667 0.91177 0.95712 1.03165 1.26191 1.00145 0.96437 1.11690 1.19932 0.87655 0.92082 0.95679 0.91936 1.21822 1.02327 1.01317 0.93930 1.60751 1.08014 1.39657 1.23238 1.22234 0.88008 0.98627 0.98335 1.21444 0.99548 0.95740 0.96986 1.19538 0.92301 0.97018 0.96174 1.21150 0.96930 1.10773 1.26862 0.91018 1.25044 0.98908 0.94951 0.94689 1.69916 1.26400 1.26406 1.31647 0.86766 0.82810 0.80337 0.79282 1.20383 1.21399 1.19027 1.84220 0.96241 1.10636 1.66986 0.89662 0.89503 0.90145 0.81097 0.91605 0.91817 0.92556 0.84078 0.95517 0.91137 0.93036 0.91823 0.96592 0.97298 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.00 0.38 -0.14 16 2 C 0.02 0.25 7.39 -13.46 -0.10 0.15 16 3 N -0.48 -5.82 10.54 -11.86 -0.13 -5.94 16 4 C 0.03 0.39 11.24 -19.18 -0.22 0.18 16 5 C -0.22 -2.53 5.20 -35.92 -0.19 -2.71 16 6 C 0.16 1.85 3.07 -68.86 -0.21 1.64 16 7 H 0.06 0.71 7.79 -51.93 -0.40 0.31 16 8 C -0.14 -1.47 9.40 37.16 0.35 -1.12 16 9 N -0.68 -9.37 6.14 -107.94 -0.66 -10.04 16 10 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 11 C -0.10 -1.95 5.41 -26.73 -0.14 -2.09 16 12 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 13 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 17 Si 0.88 21.86 27.47 -169.99 -4.67 17.20 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 21 S 0.16 1.72 22.81 -107.50 -2.45 -0.74 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.06 0.73 7.45 -51.93 -0.39 0.35 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.34 4.63 8.19 -39.30 -0.32 4.31 16 30 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -31.72 313.56 -8.76 -40.48 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.65 Total: -1.16 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.70 Total: -17.12 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.01 Total: -43.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.45 Total: -0.74 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.72 -8.76 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090408043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.637 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds