Wall clock time and date at job start Mon Mar 30 2020 00:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.62774 * 2 1 4 4 C 1.53254 * 109.63515 * 239.60378 * 2 1 3 5 5 N 1.46462 * 109.86126 * 178.28736 * 4 2 1 6 6 C 1.46896 * 111.00312 * 197.76726 * 5 4 2 7 7 C 1.52998 * 109.47357 * 170.00405 * 6 5 4 8 8 H 1.08998 * 109.47104 * 55.00451 * 7 6 5 9 9 C 1.47203 * 109.47211 * 294.99967 * 7 6 5 10 10 N 5.31050 * 146.02780 * 308.26628 * 2 1 3 11 11 C 1.53002 * 109.46886 * 174.99797 * 7 6 5 12 12 C 1.50706 * 109.47153 * 184.99546 * 11 7 6 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 7 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 7 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.46475 * 112.55638 * 72.66001 * 5 4 2 21 21 C 1.53254 * 109.85879 * 287.33977 * 20 5 4 22 22 S 1.81898 * 109.63236 * 120.58879 * 2 1 3 23 23 H 1.09001 * 109.47145 * 180.39383 * 1 2 3 24 24 H 1.08996 * 109.47693 * 300.39346 * 1 2 3 25 25 H 1.09004 * 109.47302 * 60.40001 * 1 2 3 26 26 H 1.09003 * 109.39879 * 58.17330 * 4 2 1 27 27 H 1.08996 * 109.34099 * 298.37275 * 4 2 1 28 28 H 1.09001 * 109.47205 * 50.00269 * 6 5 4 29 29 H 1.09002 * 109.47023 * 290.00522 * 6 5 4 30 30 H 1.09004 * 109.47178 * 65.00336 * 11 7 6 31 31 H 1.08993 * 109.47411 * 305.00018 * 11 7 6 32 32 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 33 33 H 1.08994 * 109.40741 * 47.45895 * 20 5 4 34 34 H 1.09005 * 109.40676 * 167.22242 * 20 5 4 35 35 H 1.08997 * 109.63232 * 302.30037 * 21 20 5 36 36 H 1.08997 * 109.79239 * 181.80398 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0449 -0.7303 -1.2450 5 7 3.5089 -0.6979 -1.2710 6 6 4.0185 -0.9997 -2.6153 7 6 5.5208 -0.7150 -2.6671 8 1 6.0237 -1.2721 -1.8766 9 6 5.7541 0.7259 -2.4768 10 7 5.9340 1.8378 -2.3299 11 6 6.0750 -1.1462 -4.0265 12 6 7.5729 -0.9803 -4.0340 13 1 8.0789 -0.6052 -3.1567 14 6 8.2971 -1.3072 -5.1606 15 7 7.6814 -1.7689 -6.2271 16 14 10.1538 -1.1022 -5.1696 17 1 10.6924 -1.5263 -6.4870 18 1 10.4956 0.3231 -4.9306 19 1 10.7495 -1.9404 -4.0983 20 6 4.1085 -1.5846 -0.2711 21 6 3.9230 -0.9906 1.1294 22 16 2.1411 -0.8718 1.4748 23 1 -0.3633 -1.0276 0.0071 24 1 -0.3634 0.5199 0.8864 25 1 -0.3634 0.5076 -0.8936 26 1 1.6559 -0.2416 -2.1383 27 1 1.7059 -1.7660 -1.2221 28 1 3.5050 -0.3759 -3.3470 29 1 3.8396 -2.0503 -2.8442 30 1 5.6371 -0.5278 -4.8101 31 1 5.8243 -2.1916 -4.2061 32 1 6.7173 -1.8757 -6.2224 33 1 3.6261 -2.5609 -0.3172 34 1 5.1726 -1.6974 -0.4787 35 1 4.3705 0.0025 1.1682 36 1 4.3973 -1.6352 1.8694 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112560406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:07 Heat of formation + Delta-G solvation = 11.345329 kcal Electronic energy + Delta-G solvation = -16696.324367 eV Core-core repulsion = 14112.977237 eV Total energy + Delta-G solvation = -2583.347130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.84642 -36.23494 -34.19814 -33.56926 -32.04785 -30.29631 -27.09465 -25.30326 -23.55045 -22.33104 -21.73169 -21.06597 -17.28458 -16.97101 -16.73535 -15.47719 -15.38476 -14.64071 -14.47946 -14.14159 -13.81327 -13.59133 -13.44851 -12.80258 -12.55605 -12.25588 -12.15042 -12.10999 -11.99459 -11.65769 -11.47034 -11.37442 -11.05354 -10.94511 -10.68302 -10.36588 -10.16958 -9.92809 -9.75360 -8.72215 -8.47747 -8.43010 -7.78601 -6.47452 -4.19131 1.65661 2.41337 3.40067 3.42956 3.54843 3.60517 3.65213 3.72524 4.47238 4.55520 4.70142 4.75162 4.89375 4.95047 5.08741 5.13554 5.28047 5.31179 5.39313 5.45163 5.47287 5.54580 5.66777 5.72135 5.78151 5.84509 5.91522 6.14367 6.27345 6.90755 6.96306 7.03195 7.17847 7.97823 8.30125 8.46075 8.74652 9.52143 10.93272 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.004605 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.040823 B = 6078.493680 C = 6213.649736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.044 4.044 3 H 0.095 0.905 4 C 0.061 3.939 5 N -0.556 5.556 6 C 0.067 3.933 7 C 0.016 3.984 8 H 0.102 0.898 9 C 0.254 3.746 10 N -0.473 5.473 11 C 0.018 3.982 12 C -0.607 4.607 13 H 0.051 0.949 14 C 0.022 3.978 15 N -0.908 5.908 16 Si 1.065 2.935 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.286 1.286 20 C 0.049 3.951 21 C -0.072 4.072 22 S -0.280 6.280 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.028 0.972 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 -1.786 11.703 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 H 0.113 0.887 4 C -0.068 4.068 5 N -0.280 5.280 6 C -0.061 4.061 7 C -0.006 4.006 8 H 0.120 0.880 9 C -0.063 4.063 10 N -0.150 5.150 11 C -0.020 4.020 12 C -0.645 4.645 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.543 5.543 16 Si 0.893 3.107 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.212 1.212 20 C -0.081 4.081 21 C -0.221 4.221 22 S -0.054 6.054 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.579 -0.205 12.014 16.687 hybrid contribution -0.898 -0.525 -0.247 1.069 sum -12.477 -0.730 11.767 17.166 Atomic orbital electron populations 1.21592 0.91816 1.02963 1.02713 1.23209 0.98659 1.01737 0.93706 0.88668 1.22282 0.87558 0.99525 0.97469 1.61139 1.06304 1.54542 1.06046 1.22211 0.94769 1.00467 0.88673 1.19127 0.94285 0.83789 1.03366 0.88036 1.28744 0.91482 0.94679 0.91436 1.80990 1.10171 1.13194 1.10642 1.19288 0.97267 0.96632 0.88855 1.21947 0.91426 1.48804 1.02324 0.93111 1.25787 1.06842 0.93459 0.92201 1.70813 1.11718 1.41991 1.29793 0.83583 0.74382 0.76553 0.76158 1.20644 1.21418 1.21242 1.22331 1.01601 0.93943 0.90180 1.23492 0.93597 1.05410 0.99572 1.86801 1.08955 1.77503 1.32128 0.91682 0.91653 0.91020 0.89718 0.93255 0.90011 0.92630 0.96459 0.95373 0.92069 0.93117 0.88643 0.89111 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.23 37.15 0.34 -0.77 16 2 C -0.04 -0.47 3.34 -26.60 -0.09 -0.56 16 3 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.06 0.67 4.72 -3.93 -0.02 0.65 16 5 N -0.56 -7.18 4.11 -235.04 -0.97 -8.15 16 6 C 0.07 0.95 4.32 -3.83 -0.02 0.93 16 7 C 0.02 0.29 2.13 -93.41 -0.20 0.09 16 8 H 0.10 1.72 5.99 -51.93 -0.31 1.41 16 9 C 0.25 5.23 13.67 -20.76 -0.28 4.95 16 10 N -0.47 -10.65 18.54 42.15 0.78 -9.87 16 11 C 0.02 0.41 3.74 -27.88 -0.10 0.30 16 12 C -0.61 -16.07 8.60 -34.44 -0.30 -16.37 16 13 H 0.05 1.35 7.59 -52.49 -0.40 0.96 16 14 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 15 N -0.91 -26.37 13.65 55.43 0.76 -25.61 16 16 Si 1.07 24.69 29.90 -169.99 -5.08 19.61 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 20 C 0.05 0.57 5.29 -3.92 -0.02 0.55 16 21 C -0.07 -0.81 6.69 37.29 0.25 -0.56 16 22 S -0.28 -3.29 21.77 -107.50 -2.34 -5.63 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.87 7.76 -51.93 -0.40 0.47 16 27 H 0.05 0.53 7.91 -51.93 -0.41 0.12 16 28 H 0.08 1.15 7.83 -51.93 -0.41 0.75 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 31 H 0.03 0.63 8.00 -51.93 -0.42 0.21 16 32 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 33 H 0.05 0.57 7.91 -51.93 -0.41 0.16 16 34 H 0.10 1.15 5.70 -51.93 -0.30 0.86 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -30.25 307.40 -8.27 -38.52 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.52 Total: -3.23 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.53 Total: -10.28 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.57 Total: -43.62 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.34 Total: -5.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.25 -8.27 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.863 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds