Wall clock time and date at job start Mon Mar 30 2020 00:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.62774 * 2 1 4 4 C 1.53254 * 109.63515 * 239.60378 * 2 1 3 5 5 N 1.46462 * 109.86126 * 178.28736 * 4 2 1 6 6 C 1.46896 * 111.00312 * 197.76726 * 5 4 2 7 7 C 1.52998 * 109.47357 * 170.00405 * 6 5 4 8 8 H 1.08998 * 109.47104 * 55.00451 * 7 6 5 9 9 C 1.47203 * 109.47211 * 294.99967 * 7 6 5 10 10 N 5.31050 * 146.02780 * 308.26628 * 2 1 3 11 11 C 1.53002 * 109.46886 * 174.99797 * 7 6 5 12 12 C 1.50706 * 109.47153 * 184.99546 * 11 7 6 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 7 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 7 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.46475 * 112.55638 * 72.66001 * 5 4 2 21 21 C 1.53254 * 109.85879 * 287.33977 * 20 5 4 22 22 S 1.81898 * 109.63236 * 120.58879 * 2 1 3 23 23 H 1.09001 * 109.47145 * 180.39383 * 1 2 3 24 24 H 1.08996 * 109.47693 * 300.39346 * 1 2 3 25 25 H 1.09004 * 109.47302 * 60.40001 * 1 2 3 26 26 H 1.09003 * 109.39879 * 58.17330 * 4 2 1 27 27 H 1.08996 * 109.34099 * 298.37275 * 4 2 1 28 28 H 1.09001 * 109.47205 * 50.00269 * 6 5 4 29 29 H 1.09002 * 109.47023 * 290.00522 * 6 5 4 30 30 H 1.09004 * 109.47178 * 65.00336 * 11 7 6 31 31 H 1.08993 * 109.47411 * 305.00018 * 11 7 6 32 32 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 33 33 H 1.08994 * 109.40741 * 47.45895 * 20 5 4 34 34 H 1.09005 * 109.40676 * 167.22242 * 20 5 4 35 35 H 1.08997 * 109.63232 * 302.30037 * 21 20 5 36 36 H 1.08997 * 109.79239 * 181.80398 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0449 -0.7303 -1.2450 5 7 3.5089 -0.6979 -1.2710 6 6 4.0185 -0.9997 -2.6153 7 6 5.5208 -0.7150 -2.6671 8 1 6.0237 -1.2721 -1.8766 9 6 5.7541 0.7259 -2.4768 10 7 5.9340 1.8378 -2.3299 11 6 6.0750 -1.1462 -4.0265 12 6 7.5729 -0.9803 -4.0340 13 1 8.0789 -0.6052 -3.1567 14 6 8.2971 -1.3072 -5.1606 15 7 7.6814 -1.7689 -6.2271 16 14 10.1538 -1.1022 -5.1696 17 1 10.6924 -1.5263 -6.4870 18 1 10.4956 0.3231 -4.9306 19 1 10.7495 -1.9404 -4.0983 20 6 4.1085 -1.5846 -0.2711 21 6 3.9230 -0.9906 1.1294 22 16 2.1411 -0.8718 1.4748 23 1 -0.3633 -1.0276 0.0071 24 1 -0.3634 0.5199 0.8864 25 1 -0.3634 0.5076 -0.8936 26 1 1.6559 -0.2416 -2.1383 27 1 1.7059 -1.7660 -1.2221 28 1 3.5050 -0.3759 -3.3470 29 1 3.8396 -2.0503 -2.8442 30 1 5.6371 -0.5278 -4.8101 31 1 5.8243 -2.1916 -4.2061 32 1 6.7173 -1.8757 -6.2224 33 1 3.6261 -2.5609 -0.3172 34 1 5.1726 -1.6974 -0.4787 35 1 4.3705 0.0025 1.1682 36 1 4.3973 -1.6352 1.8694 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112560406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:07 Heat of formation + Delta-G solvation = -6.001645 kcal Electronic energy + Delta-G solvation = -16697.076588 eV Core-core repulsion = 14112.977237 eV Total energy + Delta-G solvation = -2584.099351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.96144 -37.74049 -35.90126 -34.75151 -33.50587 -31.44995 -28.43826 -26.58520 -24.84755 -24.02090 -22.76846 -22.04473 -19.09146 -18.29534 -17.92976 -16.55185 -16.54133 -15.71061 -15.59148 -15.52911 -15.19063 -14.98760 -14.77728 -14.09320 -14.02699 -13.69634 -13.38039 -13.24997 -13.07160 -12.94281 -12.85516 -12.66158 -12.41344 -12.23557 -12.08728 -11.98619 -11.72674 -11.43641 -10.75283 -10.60087 -10.52496 -9.43887 -8.70965 -8.63509 -6.34967 0.78951 1.53452 1.54242 1.60062 1.79121 1.95069 2.02645 2.55075 2.66827 3.16315 3.24113 3.71414 3.80316 3.93567 4.08219 4.11474 4.21421 4.22944 4.42252 4.50619 4.56201 4.60857 4.70150 4.79408 4.81586 4.85112 4.90241 5.00081 5.19089 5.20452 5.36461 5.84165 5.98092 6.02690 6.20876 6.62543 6.80040 7.42525 8.78668 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.004605 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.040823 B = 6078.493680 C = 6213.649736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.039 4.039 3 H 0.080 0.920 4 C 0.063 3.937 5 N -0.568 5.568 6 C 0.078 3.922 7 C 0.026 3.974 8 H 0.117 0.883 9 C 0.264 3.736 10 N -0.509 5.509 11 C 0.022 3.978 12 C -0.616 4.616 13 H 0.045 0.955 14 C -0.028 4.028 15 N -0.935 5.935 16 Si 1.104 2.896 17 H -0.283 1.283 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.049 3.951 21 C -0.067 4.067 22 S -0.298 6.298 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.074 0.926 30 H -0.002 1.002 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 -2.458 12.521 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 H 0.098 0.902 4 C -0.066 4.066 5 N -0.293 5.293 6 C -0.050 4.050 7 C 0.004 3.996 8 H 0.135 0.865 9 C -0.053 4.053 10 N -0.187 5.187 11 C -0.017 4.017 12 C -0.654 4.654 13 H 0.063 0.937 14 C -0.227 4.227 15 N -0.572 5.572 16 Si 0.927 3.073 17 H -0.208 1.208 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.080 4.080 21 C -0.216 4.216 22 S -0.072 6.072 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.152 -0.880 12.856 17.712 hybrid contribution -0.760 -0.292 -0.468 0.939 sum -12.911 -1.172 12.389 17.932 Atomic orbital electron populations 1.21582 0.89985 1.03493 1.03490 1.23237 1.00076 1.00540 0.92957 0.90201 1.22326 0.86213 1.00180 0.97923 1.61079 1.07626 1.55202 1.05414 1.22025 0.91793 1.01524 0.89662 1.19115 0.97166 0.82137 1.01160 0.86548 1.29275 0.90375 0.95173 0.90448 1.80989 1.11514 1.14403 1.11747 1.19148 0.95195 0.96538 0.90797 1.22357 0.93660 1.47561 1.01779 0.93669 1.27005 1.10404 0.93107 0.92158 1.70914 1.11443 1.44125 1.30765 0.83081 0.70566 0.77004 0.76696 1.20846 1.20999 1.18904 1.22352 1.01391 0.94222 0.90029 1.23474 0.93287 1.04951 0.99868 1.86869 1.09437 1.77592 1.33305 0.91218 0.91585 0.89542 0.88842 0.92378 0.89957 0.90826 0.98340 0.94890 0.92857 0.92116 0.88960 0.90552 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.23 71.98 0.66 -1.20 16 2 C -0.04 -0.77 3.34 30.68 0.10 -0.67 16 3 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.06 1.23 4.72 86.47 0.41 1.64 16 5 N -0.57 -13.56 4.11 -897.52 -3.69 -17.25 16 6 C 0.08 2.06 4.32 86.30 0.37 2.43 16 7 C 0.03 0.90 2.13 -12.60 -0.03 0.87 16 8 H 0.12 3.72 5.99 -2.39 -0.01 3.70 16 9 C 0.26 10.68 13.67 89.44 1.22 11.91 16 10 N -0.51 -22.76 18.54 20.00 0.37 -22.39 16 11 C 0.02 0.97 3.74 29.85 0.11 1.08 16 12 C -0.62 -32.28 8.60 25.60 0.22 -32.06 16 13 H 0.04 2.37 7.59 -2.91 -0.02 2.35 16 14 C -0.03 -1.52 5.46 84.65 0.46 -1.06 16 15 N -0.94 -54.46 13.65 21.45 0.29 -54.17 16 16 Si 1.10 49.09 29.90 68.60 2.05 51.14 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 C 0.05 1.05 5.29 86.47 0.46 1.51 16 21 C -0.07 -1.41 6.69 72.07 0.48 -0.93 16 22 S -0.30 -6.54 21.77 -56.49 -1.23 -7.77 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.09 1.69 7.76 -2.39 -0.02 1.67 16 27 H 0.06 1.07 7.91 -2.39 -0.02 1.05 16 28 H 0.08 2.17 7.83 -2.39 -0.02 2.15 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.00 -0.08 8.01 -2.39 -0.02 -0.10 16 31 H 0.03 1.44 8.00 -2.39 -0.02 1.42 16 32 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 33 H 0.06 1.20 7.91 -2.39 -0.02 1.18 16 34 H 0.09 2.04 5.70 -2.38 -0.01 2.02 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -63.73 307.40 3.42 -60.31 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.15 Total: 6.60 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.48 Total: -16.48 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -3.03 Total: -93.80 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.05 Total: 51.14 kcal Atomic # 16 Polarization: -6.54 SS G_CDS: -1.23 Total: -7.77 kcal Total: -63.73 3.42 -60.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.308 kcal (2) G-P(sol) polarization free energy of solvation -63.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds