Wall clock time and date at job start Sun Mar 29 2020 23:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29029 * 124.91388 * 2 1 4 4 C 1.31783 * 117.12440 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.75071 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47021 * 305.02590 * 5 4 3 7 7 N 1.46902 * 109.46832 * 179.97438 * 6 5 4 8 8 C 1.46894 * 111.00398 * 293.95866 * 7 6 5 9 9 C 1.46899 * 110.99980 * 170.00051 * 7 6 5 10 10 H 1.09002 * 109.47043 * 60.00322 * 9 7 6 11 11 C 1.52997 * 109.47254 * 300.00251 * 9 7 6 12 12 C 1.50699 * 109.47244 * 180.02562 * 9 7 6 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 7 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 7 15 15 N 1.31515 * 120.00126 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99745 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47438 * 0.02562 * 16 14 12 18 18 H 1.48491 * 109.47045 * 120.00577 * 16 14 12 19 19 H 1.48501 * 109.46950 * 240.00369 * 16 14 12 20 20 C 1.33635 * 114.50011 * 0.23243 * 4 3 2 21 21 S 1.70975 * 124.91907 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.47276 * 90.00314 * 1 2 3 23 23 H 1.09001 * 109.46524 * 210.00237 * 1 2 3 24 24 H 1.08998 * 109.46945 * 329.99551 * 1 2 3 25 25 H 1.08997 * 109.47281 * 185.02630 * 5 4 3 26 26 H 1.08999 * 109.47098 * 65.02897 * 5 4 3 27 27 H 1.08997 * 109.47344 * 60.00375 * 6 5 4 28 28 H 1.09000 * 109.47140 * 299.99650 * 6 5 4 29 29 H 1.09002 * 109.46987 * 296.04599 * 8 7 6 30 30 H 1.09004 * 109.47461 * 56.04278 * 8 7 6 31 31 H 1.08999 * 109.47654 * 176.04709 * 8 7 6 32 32 H 1.08998 * 109.47533 * 59.99633 * 11 9 7 33 33 H 1.08996 * 109.47853 * 179.97438 * 11 9 7 34 34 H 1.09002 * 109.47153 * 300.00004 * 11 9 7 35 35 H 0.96999 * 120.00073 * 179.97438 * 15 14 12 36 36 H 1.08006 * 126.04104 * 179.76630 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0247 -0.0012 6 6 4.2325 2.9502 -1.1825 7 7 5.1869 4.0669 -1.1827 8 6 4.9921 4.9263 -0.0075 9 6 5.0878 4.8439 -2.4254 10 1 4.0794 5.2461 -2.5230 11 6 5.3930 3.9374 -3.6195 12 6 6.0799 5.9776 -2.3895 13 1 6.7204 6.1077 -1.5297 14 6 6.1707 6.8482 -3.4548 15 7 5.3911 6.6896 -4.5020 16 14 7.4011 8.2532 -3.4105 17 1 8.1535 8.2122 -2.1309 18 1 8.3485 8.1173 -4.5459 19 1 6.6796 9.5465 -3.5199 20 6 3.9354 -0.4005 -0.0059 21 16 2.4857 -1.4019 0.0006 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3632 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 5.5448 1.6354 -0.0916 26 1 4.4375 2.5830 0.9304 27 1 3.2184 3.3395 -1.0921 28 1 4.3257 2.3919 -2.1140 29 1 4.0052 5.3869 -0.0538 30 1 5.0705 4.3258 0.8989 31 1 5.7557 5.7040 0.0047 32 1 4.6758 3.1170 -3.6457 33 1 5.3191 4.5137 -4.5416 34 1 6.4015 3.5352 -3.5219 35 1 5.4548 7.3023 -5.2513 36 1 4.9546 -0.7580 -0.0108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125304976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:44 Heat of formation + Delta-G solvation = 44.319006 kcal Electronic energy + Delta-G solvation = -16528.689168 eV Core-core repulsion = 13946.771884 eV Total energy + Delta-G solvation = -2581.917284 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91586 -37.05326 -33.56469 -32.46704 -30.14915 -28.87876 -28.05129 -25.69366 -24.27703 -23.06243 -21.48900 -19.66280 -19.20665 -17.42622 -16.23509 -15.47056 -15.16889 -14.97653 -14.23390 -14.08173 -13.55514 -13.44544 -13.12785 -12.73966 -12.57268 -12.28596 -12.16709 -11.69875 -11.47225 -11.09770 -11.02321 -10.76275 -10.58160 -10.24696 -10.04553 -9.98950 -9.75558 -9.59952 -9.40988 -8.80201 -8.60149 -8.38184 -7.09721 -5.96938 -4.01197 0.71429 1.34668 1.71289 2.84362 3.32187 3.39810 3.44353 4.05964 4.44234 4.88098 5.03341 5.21430 5.27490 5.31960 5.34039 5.48857 5.64546 5.70483 5.91533 6.00014 6.18281 6.34335 6.41881 6.54717 6.66097 6.85143 6.92404 7.11125 7.22124 7.58608 7.78428 7.81755 7.87769 8.26792 8.38016 8.66483 9.05907 9.63645 11.10058 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.044610 B = 0.004089 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.514044 B = 6846.274344 C = 6934.686339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.050 3.950 3 N -0.465 5.465 4 C 0.085 3.915 5 C -0.043 4.043 6 C 0.061 3.939 7 N -0.539 5.539 8 C 0.037 3.963 9 C 0.212 3.788 10 H -0.003 1.003 11 C -0.132 4.132 12 C -0.501 4.501 13 H 0.064 0.936 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.260 4.260 21 S 0.090 5.910 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.007 0.993 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.259 0.741 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -15.188 9.036 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.229 4.229 3 N -0.180 5.180 4 C -0.046 4.046 5 C -0.083 4.083 6 C -0.068 4.068 7 N -0.264 5.264 8 C -0.112 4.112 9 C 0.106 3.894 10 H 0.015 0.985 11 C -0.190 4.190 12 C -0.540 4.540 13 H 0.082 0.918 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.398 4.398 21 S 0.344 5.656 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.026 0.974 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.095 -15.858 8.880 19.511 hybrid contribution 0.461 1.736 -0.180 1.805 sum -6.635 -14.122 8.700 17.865 Atomic orbital electron populations 1.20434 0.85338 1.04012 1.03922 1.27063 1.01712 0.90790 1.03340 1.66111 1.04835 1.31318 1.15714 1.20473 0.90020 0.94547 0.99610 1.20312 0.95324 0.92182 1.00512 1.21960 0.94447 0.93460 0.96972 1.62129 1.48934 1.10815 1.04511 1.22230 0.99720 0.96855 0.92395 1.19234 0.95618 0.90547 0.84009 0.98496 1.21847 0.97823 0.97169 1.02208 1.21213 1.19748 1.09990 1.03036 0.91780 1.24944 0.96065 0.97887 0.95443 1.69911 1.38969 1.37570 1.06896 0.86471 0.81131 0.81968 0.78014 1.19740 1.21070 1.21186 1.26808 1.02790 0.95536 1.14713 1.83797 0.98732 1.13457 1.69663 0.89570 0.90288 0.89274 0.89681 0.90331 0.95209 0.91082 0.97046 0.93824 0.90730 0.97373 0.89718 0.94712 0.93103 0.80586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.46 36.01 0.38 -0.28 16 2 C 0.05 0.61 7.39 -13.46 -0.10 0.51 16 3 N -0.46 -7.23 10.34 -8.06 -0.08 -7.31 16 4 C 0.08 1.28 6.08 -84.23 -0.51 0.77 16 5 C -0.04 -0.69 5.64 -27.88 -0.16 -0.85 16 6 C 0.06 1.19 4.67 -3.82 -0.02 1.17 16 7 N -0.54 -12.07 4.62 -236.29 -1.09 -13.17 16 8 C 0.04 0.75 9.05 60.06 0.54 1.29 16 9 C 0.21 5.56 2.06 -68.87 -0.14 5.42 16 10 H 0.00 -0.07 8.14 -51.93 -0.42 -0.50 16 11 C -0.13 -3.36 8.76 37.16 0.33 -3.03 16 12 C -0.50 -14.00 7.93 -34.44 -0.27 -14.27 16 13 H 0.06 1.78 6.40 -52.49 -0.34 1.44 16 14 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -25.99 11.32 55.43 0.63 -25.36 16 16 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.26 -3.26 11.07 29.12 0.32 -2.94 16 21 S 0.09 0.96 23.18 -107.50 -2.49 -1.53 16 22 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 26 H 0.08 1.24 6.47 -51.93 -0.34 0.90 16 27 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 28 H 0.07 1.45 5.83 -51.93 -0.30 1.15 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.76 6.30 -51.93 -0.33 0.43 16 31 H 0.07 1.61 6.24 -51.93 -0.32 1.28 16 32 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 33 H 0.08 2.33 6.07 -51.93 -0.32 2.02 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 36 H 0.18 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 303.54 15.07 4.57 4.57 Total: -1.00 -30.70 303.54 -8.41 -39.11 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.19 Total: -2.19 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 0.27 Total: -10.68 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.55 Total: -45.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.70 -8.41 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125304976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.427 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds