Wall clock time and date at job start Sun Mar 29 2020 23:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29029 * 124.91388 * 2 1 4 4 C 1.31783 * 117.12440 * 180.02562 * 3 2 1 5 5 C 1.50701 * 122.75071 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47021 * 305.02590 * 5 4 3 7 7 N 1.46902 * 109.46832 * 179.97438 * 6 5 4 8 8 C 1.46894 * 111.00398 * 293.95866 * 7 6 5 9 9 C 1.46899 * 110.99980 * 170.00051 * 7 6 5 10 10 H 1.09002 * 109.47043 * 60.00322 * 9 7 6 11 11 C 1.52997 * 109.47254 * 300.00251 * 9 7 6 12 12 C 1.50699 * 109.47244 * 180.02562 * 9 7 6 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 7 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 7 15 15 N 1.31515 * 120.00126 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99745 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47438 * 0.02562 * 16 14 12 18 18 H 1.48491 * 109.47045 * 120.00577 * 16 14 12 19 19 H 1.48501 * 109.46950 * 240.00369 * 16 14 12 20 20 C 1.33635 * 114.50011 * 0.23243 * 4 3 2 21 21 S 1.70975 * 124.91907 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.47276 * 90.00314 * 1 2 3 23 23 H 1.09001 * 109.46524 * 210.00237 * 1 2 3 24 24 H 1.08998 * 109.46945 * 329.99551 * 1 2 3 25 25 H 1.08997 * 109.47281 * 185.02630 * 5 4 3 26 26 H 1.08999 * 109.47098 * 65.02897 * 5 4 3 27 27 H 1.08997 * 109.47344 * 60.00375 * 6 5 4 28 28 H 1.09000 * 109.47140 * 299.99650 * 6 5 4 29 29 H 1.09002 * 109.46987 * 296.04599 * 8 7 6 30 30 H 1.09004 * 109.47461 * 56.04278 * 8 7 6 31 31 H 1.08999 * 109.47654 * 176.04709 * 8 7 6 32 32 H 1.08998 * 109.47533 * 59.99633 * 11 9 7 33 33 H 1.08996 * 109.47853 * 179.97438 * 11 9 7 34 34 H 1.09002 * 109.47153 * 300.00004 * 11 9 7 35 35 H 0.96999 * 120.00073 * 179.97438 * 15 14 12 36 36 H 1.08006 * 126.04104 * 179.76630 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0247 -0.0012 6 6 4.2325 2.9502 -1.1825 7 7 5.1869 4.0669 -1.1827 8 6 4.9921 4.9263 -0.0075 9 6 5.0878 4.8439 -2.4254 10 1 4.0794 5.2461 -2.5230 11 6 5.3930 3.9374 -3.6195 12 6 6.0799 5.9776 -2.3895 13 1 6.7204 6.1077 -1.5297 14 6 6.1707 6.8482 -3.4548 15 7 5.3911 6.6896 -4.5020 16 14 7.4011 8.2532 -3.4105 17 1 8.1535 8.2122 -2.1309 18 1 8.3485 8.1173 -4.5459 19 1 6.6796 9.5465 -3.5199 20 6 3.9354 -0.4005 -0.0059 21 16 2.4857 -1.4019 0.0006 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3632 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 5.5448 1.6354 -0.0916 26 1 4.4375 2.5830 0.9304 27 1 3.2184 3.3395 -1.0921 28 1 4.3257 2.3919 -2.1140 29 1 4.0052 5.3869 -0.0538 30 1 5.0705 4.3258 0.8989 31 1 5.7557 5.7040 0.0047 32 1 4.6758 3.1170 -3.6457 33 1 5.3191 4.5137 -4.5416 34 1 6.4015 3.5352 -3.5219 35 1 5.4548 7.3023 -5.2513 36 1 4.9546 -0.7580 -0.0108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125304976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:44 Heat of formation + Delta-G solvation = 24.285436 kcal Electronic energy + Delta-G solvation = -16529.557889 eV Core-core repulsion = 13946.771884 eV Total energy + Delta-G solvation = -2582.786005 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94497 -38.83456 -35.23625 -33.90819 -31.66467 -30.55220 -29.11276 -27.54223 -26.10215 -24.35497 -22.93691 -21.10358 -20.63524 -18.51750 -18.31171 -17.06476 -16.42641 -16.28472 -15.86906 -15.43147 -15.17019 -14.75243 -14.39510 -14.11943 -13.84669 -13.79597 -13.24157 -13.02625 -12.96958 -12.80982 -12.75966 -12.52730 -12.31044 -12.07719 -11.97423 -11.88111 -11.52375 -10.87073 -10.55463 -10.52174 -10.34065 -9.57600 -8.97582 -8.11438 -6.23828 -0.21573 0.46906 0.77267 1.42158 1.43393 1.55899 1.80452 2.42747 3.14992 3.18111 3.39365 4.02337 4.14672 4.23019 4.37677 4.47634 4.58653 4.63261 4.66340 4.71255 4.72687 4.90234 4.97643 4.99806 5.04696 5.09215 5.11324 5.25588 5.34334 5.49305 5.72421 5.77017 6.23400 6.37486 6.70823 6.86047 6.91180 7.45526 8.95346 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.044610 B = 0.004089 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.514044 B = 6846.274344 C = 6934.686339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.034 3.966 3 N -0.510 5.510 4 C 0.056 3.944 5 C -0.030 4.030 6 C 0.070 3.930 7 N -0.541 5.541 8 C 0.040 3.960 9 C 0.215 3.785 10 H -0.045 1.045 11 C -0.119 4.119 12 C -0.518 4.518 13 H 0.063 0.937 14 C 0.008 3.992 15 N -0.923 5.923 16 Si 0.964 3.036 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.282 1.282 20 C -0.263 4.263 21 S 0.155 5.845 22 H 0.094 0.906 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.009 0.991 28 H 0.060 0.940 29 H -0.001 1.001 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.060 0.940 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 -16.724 10.061 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.244 4.244 3 N -0.226 5.226 4 C -0.076 4.076 5 C -0.070 4.070 6 C -0.059 4.059 7 N -0.265 5.265 8 C -0.108 4.108 9 C 0.108 3.892 10 H -0.027 1.027 11 C -0.177 4.177 12 C -0.557 4.557 13 H 0.082 0.918 14 C -0.190 4.190 15 N -0.563 5.563 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.208 1.208 20 C -0.402 4.402 21 S 0.409 5.591 22 H 0.113 0.887 23 H 0.126 0.874 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.018 0.982 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.660 -17.417 9.923 21.123 hybrid contribution 0.234 2.095 -0.483 2.163 sum -6.426 -15.322 9.440 19.109 Atomic orbital electron populations 1.20608 0.83156 1.05233 1.04821 1.27669 1.03291 0.91168 1.02276 1.66098 1.05425 1.33397 1.17685 1.20325 0.90011 0.95008 1.02241 1.20110 0.96493 0.92033 0.98399 1.21896 0.92678 0.92868 0.98451 1.62111 1.49813 1.11038 1.03520 1.22233 0.98539 0.96965 0.93061 1.19061 0.92981 0.90963 0.86226 1.02740 1.21651 0.98268 0.97091 1.00727 1.21472 1.20072 1.10908 1.03197 0.91845 1.25778 0.97833 1.00380 0.94999 1.70045 1.40298 1.38519 1.07467 0.85410 0.78741 0.78593 0.78307 1.18895 1.20502 1.20786 1.27140 1.04860 0.95339 1.12825 1.83542 0.96456 1.11163 1.67928 0.88709 0.87428 0.89717 0.88454 0.90313 0.97261 0.92166 0.98243 0.90304 0.91875 0.95736 0.92133 0.94568 0.92948 0.78515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.46 71.24 0.75 -0.44 16 2 C 0.03 0.78 7.39 88.52 0.65 1.43 16 3 N -0.51 -15.61 10.34 -179.40 -1.86 -17.46 16 4 C 0.06 1.62 6.08 41.52 0.25 1.87 16 5 C -0.03 -0.94 5.64 29.85 0.17 -0.78 16 6 C 0.07 2.78 4.67 86.30 0.40 3.18 16 7 N -0.54 -24.46 4.62 -901.48 -4.17 -28.63 16 8 C 0.04 1.66 9.05 127.69 1.16 2.81 16 9 C 0.21 11.59 2.06 44.17 0.09 11.68 16 10 H -0.04 -2.75 8.14 -2.39 -0.02 -2.77 16 11 C -0.12 -6.17 8.76 71.98 0.63 -5.54 16 12 C -0.52 -29.37 7.93 25.60 0.20 -29.16 16 13 H 0.06 3.53 6.40 -2.91 -0.02 3.51 16 14 C 0.01 0.47 5.30 84.65 0.45 0.92 16 15 N -0.92 -54.70 11.32 21.45 0.24 -54.46 16 16 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 C -0.26 -6.01 11.07 66.78 0.74 -5.27 16 21 S 0.15 2.87 23.18 -56.49 -1.31 1.56 16 22 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 2.76 8.03 -2.39 -0.02 2.74 16 26 H 0.08 2.40 6.47 -2.39 -0.02 2.39 16 27 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16 28 H 0.06 2.50 5.83 -2.39 -0.01 2.48 16 29 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 30 H 0.08 2.67 6.30 -2.38 -0.02 2.65 16 31 H 0.06 2.72 6.24 -2.39 -0.01 2.71 16 32 H 0.02 1.14 6.20 -2.39 -0.01 1.12 16 33 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 36 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -67.07 303.54 1.49 -65.57 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.06 Total: 6.28 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 5.49 Total: -19.29 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -5.78 Total: -100.56 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.31 Total: 1.56 kcal Total: -67.07 1.49 -65.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125304976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.860 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds