Wall clock time and date at job start Sun Mar 29 2020 23:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46851 * 2 1 4 4 C 1.52996 * 109.47219 * 239.99956 * 2 1 3 5 5 C 1.50699 * 109.47239 * 59.99650 * 4 2 1 6 6 H 1.08003 * 119.99960 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99830 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00071 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47012 * 89.99724 * 9 7 5 11 11 H 1.48499 * 109.47078 * 209.99436 * 9 7 5 12 12 H 1.48496 * 109.47022 * 329.99978 * 9 7 5 13 13 C 1.52993 * 109.46733 * 119.99706 * 2 1 3 14 14 N 1.46906 * 109.47378 * 299.99953 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.50704 * 109.47041 * 179.97438 * 15 14 13 17 17 C 1.33644 * 126.03627 * 89.99706 * 16 15 14 18 18 N 1.31781 * 114.49933 * 180.02562 * 17 16 15 19 19 C 1.29022 * 117.12415 * 0.02562 * 18 17 16 20 20 S 1.70974 * 110.16818 * 359.72123 * 19 18 17 21 21 H 1.09002 * 109.47288 * 300.00339 * 1 2 3 22 22 H 1.09001 * 109.46630 * 60.00102 * 1 2 3 23 23 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46524 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46962 * 299.99689 * 3 2 1 26 26 H 1.08992 * 109.47457 * 59.99755 * 3 2 1 27 27 H 1.08996 * 109.47261 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.46870 * 299.99985 * 4 2 1 29 29 H 0.96992 * 120.00108 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46862 * 180.02562 * 13 2 1 31 31 H 1.09000 * 109.47250 * 60.00079 * 13 2 1 32 32 H 1.00904 * 110.99860 * 56.05050 * 14 13 2 33 33 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 34 34 H 1.08995 * 109.47296 * 60.00089 * 15 14 13 35 35 H 1.08001 * 122.74676 * 0.02562 * 17 16 15 36 36 H 1.08003 * 124.91372 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8713 -0.4818 -3.7320 8 7 1.4333 0.1384 -4.8058 9 14 2.9453 -2.0005 -3.9032 10 1 2.0867 -3.2113 -3.9491 11 1 3.7376 -1.9077 -5.1558 12 1 3.8653 -2.0898 -2.7410 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0286 2.4487 15 6 2.0217 -0.6944 3.6703 16 6 1.5011 0.0430 4.8771 17 6 0.3471 -0.1962 5.5072 18 7 0.1160 0.5881 6.5408 19 6 1.0105 1.4758 6.8172 20 16 2.3091 1.3687 5.7102 21 1 -0.3634 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1301 -0.7216 -1.2490 28 1 1.6767 -1.7489 -1.2492 29 1 1.6683 -0.1925 -5.6867 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -1.7488 1.2493 32 1 0.5437 0.0414 2.4402 33 1 1.6586 -1.7219 3.6874 34 1 3.1116 -0.6938 3.6869 35 1 -0.3398 -0.9689 5.1950 36 1 0.9499 2.1814 7.6327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164724179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:44 Heat of formation + Delta-G solvation = 32.324411 kcal Electronic energy + Delta-G solvation = -16413.797482 eV Core-core repulsion = 13831.360073 eV Total energy + Delta-G solvation = -2582.437409 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78125 -37.84008 -34.87171 -32.32203 -30.64554 -27.78662 -26.72581 -26.39910 -25.00268 -23.49317 -21.81375 -20.18205 -18.49789 -17.72298 -16.80355 -15.76309 -15.54573 -15.08855 -14.28759 -14.13976 -14.06919 -13.83150 -13.30347 -12.87923 -12.64440 -12.47432 -12.19848 -11.91465 -11.40549 -11.08886 -10.97640 -10.87394 -10.51388 -10.37448 -9.83997 -9.81479 -9.70404 -9.52283 -9.29943 -9.11733 -8.92488 -8.50651 -8.28293 -6.00787 -3.97146 0.53661 1.21970 1.62811 2.66619 3.31034 3.39100 3.42095 4.16063 4.37048 4.47303 4.77242 4.98876 5.07161 5.31992 5.38373 5.47600 5.59563 5.67097 5.83942 5.96726 6.08628 6.20035 6.37565 6.56890 6.65130 6.77927 7.02357 7.09349 7.14108 7.21900 7.30428 7.41699 7.50288 7.53525 7.84109 8.58781 9.05081 9.62137 11.12350 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.047835 B = 0.003964 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.202918 B = 7061.435566 C = 7144.676635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.118 4.118 4 C -0.004 4.004 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.681 5.681 15 C 0.131 3.869 16 C -0.203 4.203 17 C 0.028 3.972 18 N -0.472 5.472 19 C 0.004 3.996 20 S 0.145 5.855 21 H 0.035 0.965 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.015 0.985 28 H 0.008 0.992 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.343 0.657 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -0.013 21.248 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.061 4.061 14 N -0.314 5.314 15 C 0.000 4.000 16 C -0.325 4.325 17 C -0.124 4.124 18 N -0.185 5.185 19 C -0.294 4.294 20 S 0.397 5.603 21 H 0.054 0.946 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.163 0.837 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.189 0.811 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.582 0.973 21.304 21.482 hybrid contribution -0.622 -2.259 -0.482 2.393 sum 1.960 -1.286 20.821 20.953 Atomic orbital electron populations 1.21794 0.95562 1.00501 1.01025 1.20424 0.95116 0.96218 0.93125 1.21616 0.99693 0.95466 1.00762 1.19626 0.96044 0.95234 0.93270 1.21133 1.31522 1.13229 0.88676 0.90423 1.25019 0.95791 0.96753 0.96021 1.69906 1.46117 1.40623 0.97838 0.86846 0.81299 0.83973 0.77530 1.20513 1.21537 1.19138 1.22180 0.99908 0.94798 0.89249 1.60611 1.16956 1.53468 1.00376 1.20267 1.00362 0.93857 0.85499 1.25997 0.99781 1.02667 1.04051 1.21760 0.96543 1.01114 0.92999 1.66311 1.29931 1.05374 1.16920 1.28363 0.94356 1.02140 1.04525 1.84110 1.23581 1.30087 1.22475 0.94610 0.91074 0.94085 0.94177 0.92066 0.93697 0.96682 0.97373 0.92874 0.91351 0.95563 0.83686 0.93179 0.89830 0.81064 0.78708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 2 C -0.05 -0.91 0.60 -154.51 -0.09 -1.00 16 3 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 4 C 0.00 -0.09 3.11 -27.89 -0.09 -0.18 16 5 C -0.51 -13.88 8.20 -34.44 -0.28 -14.16 16 6 H 0.08 2.27 5.92 -52.48 -0.31 1.96 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.07 1.04 4.65 -3.82 -0.02 1.02 16 14 N -0.68 -9.02 5.70 -115.06 -0.66 -9.67 16 15 C 0.13 1.44 6.22 -4.97 -0.03 1.41 16 16 C -0.20 -2.19 6.11 -35.92 -0.22 -2.41 16 17 C 0.03 0.31 11.25 -19.18 -0.22 0.09 16 18 N -0.47 -5.53 10.54 -15.75 -0.17 -5.70 16 19 C 0.00 0.03 12.23 51.58 0.63 0.66 16 20 S 0.15 1.37 23.22 -107.50 -2.50 -1.13 16 21 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 22 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 26 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 27 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 28 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.34 4.50 6.76 -39.29 -0.27 4.24 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 303.58 15.07 4.57 4.57 Total: -1.00 -30.44 303.58 -7.78 -38.21 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.32 Total: 0.47 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 0.18 Total: -16.81 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.05 Total: -42.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.50 Total: -1.13 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.44 -7.78 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164724179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.535 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds