Wall clock time and date at job start Sun Mar 29 2020 23:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46851 * 2 1 4 4 C 1.52996 * 109.47219 * 239.99956 * 2 1 3 5 5 C 1.50699 * 109.47239 * 59.99650 * 4 2 1 6 6 H 1.08003 * 119.99960 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99830 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00071 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47012 * 89.99724 * 9 7 5 11 11 H 1.48499 * 109.47078 * 209.99436 * 9 7 5 12 12 H 1.48496 * 109.47022 * 329.99978 * 9 7 5 13 13 C 1.52993 * 109.46733 * 119.99706 * 2 1 3 14 14 N 1.46906 * 109.47378 * 299.99953 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.50704 * 109.47041 * 179.97438 * 15 14 13 17 17 C 1.33644 * 126.03627 * 89.99706 * 16 15 14 18 18 N 1.31781 * 114.49933 * 180.02562 * 17 16 15 19 19 C 1.29022 * 117.12415 * 0.02562 * 18 17 16 20 20 S 1.70974 * 110.16818 * 359.72123 * 19 18 17 21 21 H 1.09002 * 109.47288 * 300.00339 * 1 2 3 22 22 H 1.09001 * 109.46630 * 60.00102 * 1 2 3 23 23 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46524 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46962 * 299.99689 * 3 2 1 26 26 H 1.08992 * 109.47457 * 59.99755 * 3 2 1 27 27 H 1.08996 * 109.47261 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.46870 * 299.99985 * 4 2 1 29 29 H 0.96992 * 120.00108 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46862 * 180.02562 * 13 2 1 31 31 H 1.09000 * 109.47250 * 60.00079 * 13 2 1 32 32 H 1.00904 * 110.99860 * 56.05050 * 14 13 2 33 33 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 34 34 H 1.08995 * 109.47296 * 60.00089 * 15 14 13 35 35 H 1.08001 * 122.74676 * 0.02562 * 17 16 15 36 36 H 1.08003 * 124.91372 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8713 -0.4818 -3.7320 8 7 1.4333 0.1384 -4.8058 9 14 2.9453 -2.0005 -3.9032 10 1 2.0867 -3.2113 -3.9491 11 1 3.7376 -1.9077 -5.1558 12 1 3.8653 -2.0898 -2.7410 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0286 2.4487 15 6 2.0217 -0.6944 3.6703 16 6 1.5011 0.0430 4.8771 17 6 0.3471 -0.1962 5.5072 18 7 0.1160 0.5881 6.5408 19 6 1.0105 1.4758 6.8172 20 16 2.3091 1.3687 5.7102 21 1 -0.3634 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1301 -0.7216 -1.2490 28 1 1.6767 -1.7489 -1.2492 29 1 1.6683 -0.1925 -5.6867 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -1.7488 1.2493 32 1 0.5437 0.0414 2.4402 33 1 1.6586 -1.7219 3.6874 34 1 3.1116 -0.6938 3.6869 35 1 -0.3398 -0.9689 5.1950 36 1 0.9499 2.1814 7.6327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164724179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:44 Heat of formation + Delta-G solvation = 12.163652 kcal Electronic energy + Delta-G solvation = -16414.671718 eV Core-core repulsion = 13831.360073 eV Total energy + Delta-G solvation = -2583.311645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56063 -39.21306 -36.12153 -34.32084 -31.69181 -29.58368 -27.92368 -27.72346 -26.21285 -24.61898 -23.40705 -20.93379 -19.66755 -18.90703 -18.83500 -16.69625 -16.52398 -16.42878 -15.86823 -15.42412 -15.14202 -14.83211 -14.67248 -14.41624 -14.02711 -13.81408 -13.53655 -13.26476 -12.80053 -12.73934 -12.49659 -12.21270 -12.10879 -12.04433 -11.71630 -11.36095 -11.03502 -10.84056 -10.68942 -10.55446 -10.21859 -9.88748 -9.30174 -8.20678 -6.21169 -0.20774 0.50052 0.89166 1.36843 1.38997 1.49887 1.89069 2.40635 3.14532 3.31540 3.52936 3.93758 4.09876 4.18202 4.25768 4.33865 4.42743 4.60844 4.73108 4.78736 4.86351 4.92285 5.04354 5.09467 5.19250 5.22358 5.38102 5.45651 5.52652 5.62545 5.75928 5.82434 6.04497 6.41390 6.45397 6.77830 6.86560 7.41370 8.95702 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.047835 B = 0.003964 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.202918 B = 7061.435566 C = 7144.676635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.049 4.049 3 C -0.109 4.109 4 C -0.003 4.003 5 C -0.504 4.504 6 H 0.042 0.958 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.080 3.920 14 N -0.685 5.685 15 C 0.136 3.864 16 C -0.218 4.218 17 C 0.022 3.978 18 N -0.504 5.504 19 C 0.009 3.991 20 S 0.160 5.840 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.345 0.655 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.181 0.819 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -1.133 23.607 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 C -0.167 4.167 4 C -0.041 4.041 5 C -0.542 4.542 6 H 0.061 0.939 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.170 1.170 13 C -0.049 4.049 14 N -0.318 5.318 15 C 0.005 3.995 16 C -0.340 4.340 17 C -0.130 4.130 18 N -0.218 5.218 19 C -0.288 4.288 20 S 0.413 5.587 21 H 0.082 0.918 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.164 0.836 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.198 0.802 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.524 -0.145 23.694 23.955 hybrid contribution -0.964 -1.789 -1.144 2.332 sum 2.560 -1.933 22.550 22.777 Atomic orbital electron populations 1.21703 0.95177 1.00760 1.00593 1.20355 0.95451 0.95873 0.93233 1.21513 0.99563 0.95642 0.99938 1.19594 0.95844 0.95331 0.93293 1.21446 1.30107 1.12095 0.90587 0.93939 1.25947 0.97612 1.00302 0.95738 1.70068 1.48359 1.42912 0.98468 0.85779 0.79694 0.79884 0.77986 1.19585 1.21617 1.17045 1.21894 0.99922 0.94706 0.88351 1.60529 1.17061 1.53708 1.00477 1.20248 1.00561 0.94317 0.84362 1.25986 1.00147 1.03510 1.04376 1.21972 0.96840 1.01275 0.92912 1.66359 1.31135 1.06537 1.17787 1.28914 0.93553 1.01580 1.04705 1.84064 1.23245 1.29330 1.22099 0.91837 0.94680 0.93445 0.94156 0.95509 0.91761 0.96680 0.96831 0.92929 0.91088 0.94686 0.83553 0.91922 0.89408 0.80204 0.75822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 2 C -0.05 -1.77 0.60 -52.18 -0.03 -1.80 16 3 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 4 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 5 C -0.50 -28.15 8.20 25.60 0.21 -27.94 16 6 H 0.04 2.62 5.92 -2.91 -0.02 2.60 16 7 C 0.00 -0.03 5.47 84.66 0.46 0.44 16 8 N -0.96 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.94 44.25 27.47 68.60 1.88 46.14 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 13 C 0.08 2.25 4.65 86.30 0.40 2.65 16 14 N -0.68 -16.15 5.70 -517.93 -2.95 -19.10 16 15 C 0.14 2.58 6.22 85.56 0.53 3.11 16 16 C -0.22 -4.17 6.11 24.64 0.15 -4.02 16 17 C 0.02 0.44 11.25 83.66 0.94 1.38 16 18 N -0.50 -10.82 10.54 -203.74 -2.15 -12.97 16 19 C 0.01 0.15 12.23 130.66 1.60 1.75 16 20 S 0.16 2.63 23.22 -56.49 -1.31 1.32 16 21 H 0.06 1.86 6.57 -2.39 -0.02 1.84 16 22 H 0.03 1.47 6.62 -2.39 -0.02 1.45 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.03 1.15 6.62 -2.39 -0.02 1.13 16 26 H 0.06 2.11 7.60 -2.39 -0.02 2.10 16 27 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 28 H 0.01 0.59 7.57 -2.39 -0.02 0.58 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.73 16 30 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.34 8.03 6.76 -89.69 -0.61 7.42 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.23 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -66.39 303.58 1.68 -64.71 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.41 Total: 11.53 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 5.51 Total: -31.78 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -4.80 Total: -91.92 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.31 Total: 1.32 kcal Total: -66.39 1.68 -64.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164724179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.872 kcal (2) G-P(sol) polarization free energy of solvation -66.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds